Wall clock time and date at job start Mon Mar 30 2020 01:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.62647 * 2 1 4 4 S 1.81890 * 109.63284 * 120.39526 * 2 1 3 5 5 C 1.82449 * 101.70447 * 68.55207 * 4 2 1 6 6 C 1.53249 * 108.57803 * 51.21430 * 5 4 2 7 7 N 1.46472 * 109.86065 * 298.01179 * 6 5 4 8 8 C 1.46902 * 111.00150 * 197.76448 * 7 6 5 9 9 C 1.50701 * 109.47117 * 298.37947 * 8 7 6 10 10 H 1.07997 * 120.00152 * 4.94002 * 9 8 7 11 11 C 1.37877 * 119.99719 * 184.94505 * 9 8 7 12 12 N 1.31517 * 119.99884 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99954 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47039 * 60.00170 * 13 11 9 15 15 H 1.48505 * 109.46968 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47113 * 299.99868 * 13 11 9 17 17 C 1.46474 * 112.55540 * 72.65940 * 7 6 5 18 18 H 1.09004 * 109.33888 * 47.42437 * 17 7 6 19 19 C 1.50705 * 109.40456 * 167.22190 * 17 7 6 20 20 C 1.38236 * 119.99731 * 40.12376 * 19 17 7 21 21 C 1.38231 * 119.99600 * 179.76443 * 20 19 17 22 22 C 1.38236 * 120.00340 * 0.50813 * 21 20 19 23 23 C 1.38235 * 119.99628 * 359.74300 * 22 21 20 24 24 C 1.38227 * 119.99959 * 220.39814 * 19 17 7 25 25 H 1.08995 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47360 * 59.99839 * 1 2 3 27 27 H 1.09004 * 109.46859 * 299.99621 * 1 2 3 28 28 H 1.09002 * 109.57723 * 291.49855 * 5 4 2 29 29 H 1.08996 * 109.77004 * 171.04314 * 5 4 2 30 30 H 1.08998 * 109.40593 * 177.89932 * 6 5 4 31 31 H 1.08997 * 109.34271 * 58.09059 * 6 5 4 32 32 H 1.09004 * 109.46552 * 58.37747 * 8 7 6 33 33 H 1.08999 * 109.47031 * 178.37069 * 8 7 6 34 34 H 0.97005 * 119.99908 * 179.97438 * 12 11 9 35 35 H 1.07997 * 120.00077 * 359.97438 * 20 19 17 36 36 H 1.08003 * 119.99601 * 180.22841 * 21 20 19 37 37 H 1.07995 * 120.00313 * 179.72276 * 22 21 20 38 38 H 1.08000 * 120.00112 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00230 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 16 2.1411 -0.8668 1.4777 5 6 1.6502 -2.5885 1.1264 6 6 2.1485 -2.9623 -0.2738 7 7 1.5187 -2.0968 -1.2736 8 6 1.6324 -2.6767 -2.6186 9 6 3.0876 -2.8068 -2.9880 10 1 3.8522 -2.5657 -2.2644 11 6 3.4429 -3.2337 -4.2500 12 7 2.5118 -3.5277 -5.1311 13 14 5.2466 -3.3944 -4.7083 14 1 5.9027 -4.3703 -3.8016 15 1 5.3606 -3.8673 -6.1114 16 1 5.9105 -2.0725 -4.5766 17 6 2.0448 -0.7301 -1.2451 18 1 3.1341 -0.7631 -1.2212 19 6 1.5931 0.0062 -2.4800 20 6 0.3075 -0.1682 -2.9572 21 6 -0.1083 0.5109 -4.0871 22 6 0.7647 1.3563 -4.7459 23 6 2.0519 1.5267 -4.2717 24 6 2.4662 0.8515 -3.1388 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8901 28 1 0.5641 -2.6734 1.1633 29 1 2.0951 -3.2565 1.8638 30 1 1.8948 -4.0015 -0.4831 31 1 3.2305 -2.8378 -0.3171 32 1 1.1651 -3.6614 -2.6303 33 1 1.1315 -2.0282 -3.3373 34 1 2.7618 -3.8277 -6.0191 35 1 -0.3730 -0.8324 -2.4453 36 1 -1.1139 0.3775 -4.4578 37 1 0.4412 1.8834 -5.6313 38 1 2.7342 2.1868 -4.7866 39 1 3.4718 0.9846 -2.7683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118421739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:37 Heat of formation + Delta-G solvation = 21.072649 kcal Electronic energy + Delta-G solvation = -20491.958016 eV Core-core repulsion = 17718.006324 eV Total energy + Delta-G solvation = -2773.951692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99820 -38.49690 -35.16900 -34.16645 -32.39377 -31.77527 -30.64043 -28.50174 -26.82324 -24.56216 -23.56535 -23.11982 -22.66868 -20.60777 -18.74004 -17.54458 -17.22184 -16.86015 -16.48169 -16.20908 -15.93349 -15.56495 -15.00595 -14.85258 -14.45664 -14.15107 -14.07210 -13.76229 -13.40770 -13.29110 -13.02162 -12.93837 -12.76018 -12.66873 -12.34960 -12.28314 -12.02511 -11.90756 -11.77392 -11.64450 -11.34348 -10.58551 -10.52898 -9.59408 -9.35865 -9.09606 -8.61424 -8.12301 -6.27525 0.59392 0.67910 0.91243 1.33535 1.34588 1.41280 1.56291 2.36976 2.98328 3.15028 3.17034 3.89407 3.91604 4.04355 4.15665 4.20296 4.29750 4.35567 4.36503 4.42906 4.48109 4.73626 4.78848 4.86213 4.91609 4.99667 5.05073 5.08167 5.21654 5.30187 5.31616 5.40096 5.45654 5.70120 5.75001 5.80315 5.84001 6.07799 6.22719 6.28639 6.50312 6.89619 7.41707 8.89720 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.009241 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.856401 B = 3029.408791 C = 4275.701905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.026 4.026 3 H 0.107 0.893 4 S -0.299 6.299 5 C -0.056 4.056 6 C 0.066 3.934 7 N -0.533 5.533 8 C 0.195 3.805 9 C -0.544 4.544 10 H 0.044 0.956 11 C 0.024 3.976 12 N -0.917 5.917 13 Si 0.937 3.063 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.275 1.275 17 C 0.146 3.854 18 H 0.029 0.971 19 C -0.062 4.062 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.127 4.127 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.026 0.974 32 H -0.002 1.002 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 8.172 7.050 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 H 0.125 0.875 4 S -0.071 6.071 5 C -0.205 4.205 6 C -0.064 4.064 7 N -0.257 5.257 8 C 0.069 3.931 9 C -0.583 4.583 10 H 0.062 0.938 11 C -0.176 4.176 12 N -0.556 5.556 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.200 1.200 17 C 0.036 3.964 18 H 0.047 0.953 19 C -0.064 4.064 20 C -0.113 4.113 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.146 4.146 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.400 8.533 7.956 12.469 hybrid contribution 1.562 -1.068 -1.852 2.648 sum -2.838 7.465 6.105 10.052 Atomic orbital electron populations 1.21955 0.91442 1.03027 1.02342 1.23211 1.00498 1.00021 0.91757 0.87468 1.86670 1.80130 1.08967 1.31338 1.23592 1.04815 0.93222 0.98833 1.22000 0.96383 0.97438 0.90535 1.61679 1.56022 1.01025 1.06924 1.19715 0.94348 0.93697 0.85294 1.21802 0.94012 1.44716 0.97808 0.93769 1.25541 1.00352 0.95127 0.96570 1.70021 1.33951 1.46015 1.05661 0.85926 0.81885 0.78493 0.77315 1.19865 1.20885 1.20010 1.20367 0.95637 0.88818 0.91560 0.95316 1.19556 0.94343 0.96251 0.96242 1.21027 0.95657 0.97962 0.96677 1.21366 1.00751 0.97480 0.95871 1.21340 0.93822 0.99251 1.00217 1.21257 0.96936 1.00546 0.96325 1.21068 0.98854 0.97872 0.96773 0.91869 0.91398 0.91216 0.88460 0.86192 0.90667 0.95590 0.98381 0.93719 0.92930 0.85896 0.84616 0.84138 0.84691 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.00 71.98 0.58 -2.94 16 2 C -0.03 -0.80 2.96 30.68 0.09 -0.70 16 3 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 4 S -0.30 -9.06 21.85 -56.49 -1.23 -10.29 16 5 C -0.06 -1.61 6.35 72.07 0.46 -1.15 16 6 C 0.07 2.42 4.79 86.47 0.41 2.84 16 7 N -0.53 -21.08 3.17 -881.13 -2.79 -23.87 16 8 C 0.20 9.60 4.33 85.56 0.37 9.97 16 9 C -0.54 -29.15 7.80 25.60 0.20 -28.95 16 10 H 0.04 2.40 6.20 -2.91 -0.02 2.38 16 11 C 0.02 1.33 5.46 84.65 0.46 1.79 16 12 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16 13 Si 0.94 43.91 29.54 68.60 2.03 45.94 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 17 C 0.15 5.47 1.31 44.33 0.06 5.52 16 18 H 0.03 1.24 7.08 -2.39 -0.02 1.23 16 19 C -0.06 -2.32 3.43 -19.87 -0.07 -2.39 16 20 C -0.09 -3.39 4.92 22.27 0.11 -3.28 16 21 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 22 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 23 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 24 C -0.13 -4.63 9.67 22.27 0.22 -4.41 16 25 H 0.06 1.83 6.68 -2.39 -0.02 1.82 16 26 H 0.07 1.86 5.66 -2.39 -0.01 1.84 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.61 7.55 -2.39 -0.02 2.59 16 29 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.07 2.81 7.89 -2.39 -0.02 2.79 16 31 H 0.03 1.06 6.91 -2.39 -0.02 1.04 16 32 H 0.00 -0.10 8.04 -2.38 -0.02 -0.12 16 33 H 0.04 2.34 4.76 -2.39 -0.01 2.33 16 34 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 35 H 0.12 4.38 6.75 -2.91 -0.02 4.36 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.11 3.94 8.03 -2.91 -0.02 3.91 16 Total: -1.00 -59.60 310.77 2.87 -56.72 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.03 Total: 20.01 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 3.56 Total: -35.60 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.51 Total: -76.78 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.23 Total: -10.29 kcal Total: -59.60 2.87 -56.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118421739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.797 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds