Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.62967 * 2 1 4 4 S 1.81905 * 109.79620 * 120.48848 * 2 1 3 5 5 C 1.81733 * 101.87820 * 171.11536 * 4 2 1 6 6 C 1.53249 * 108.58734 * 308.64119 * 5 4 2 7 7 N 1.46468 * 109.79284 * 62.03797 * 6 5 4 8 8 C 1.46906 * 110.99616 * 162.27590 * 7 6 5 9 9 C 1.50698 * 109.47117 * 293.94842 * 8 7 6 10 10 H 1.07999 * 120.00078 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00081 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00362 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00074 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47234 * 90.00567 * 13 11 9 15 15 H 1.48511 * 109.47396 * 210.00568 * 13 11 9 16 16 H 1.48497 * 109.47208 * 330.00301 * 13 11 9 17 17 C 1.46463 * 112.56001 * 287.38393 * 7 6 5 18 18 H 1.09007 * 109.40871 * 312.53948 * 17 7 6 19 19 C 1.50700 * 109.40839 * 192.78016 * 17 7 6 20 20 C 1.38243 * 119.99618 * 319.72291 * 19 17 7 21 21 C 1.38242 * 119.99744 * 179.76431 * 20 19 17 22 22 C 1.38231 * 119.99887 * 0.51238 * 21 20 19 23 23 C 1.38236 * 120.00203 * 359.73983 * 22 21 20 24 24 C 1.38235 * 120.00138 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47219 * 180.39925 * 1 2 3 26 26 H 1.09002 * 109.47022 * 300.39427 * 1 2 3 27 27 H 1.08997 * 109.47320 * 60.39754 * 1 2 3 28 28 H 1.09004 * 109.53224 * 188.94498 * 5 4 2 29 29 H 1.09003 * 109.65456 * 68.41153 * 5 4 2 30 30 H 1.09002 * 109.40649 * 301.95896 * 6 5 4 31 31 H 1.08997 * 109.40556 * 182.12016 * 6 5 4 32 32 H 1.08995 * 109.47188 * 53.95453 * 8 7 6 33 33 H 1.09004 * 109.46556 * 173.95762 * 8 7 6 34 34 H 0.96996 * 120.00734 * 179.97438 * 12 11 9 35 35 H 1.08002 * 120.00080 * 0.02562 * 20 19 17 36 36 H 1.07994 * 119.99868 * 180.23188 * 21 20 19 37 37 H 1.08006 * 119.99843 * 179.72397 * 22 21 20 38 38 H 1.08001 * 120.00370 * 179.97438 * 23 22 21 39 39 H 1.07993 * 120.00172 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 16 2.1460 -0.8684 1.4749 5 6 3.9259 -0.9817 1.1260 6 6 4.1124 -1.5777 -0.2735 7 7 3.5088 -0.6939 -1.2734 8 6 4.0169 -0.9960 -2.6182 9 6 5.4854 -0.6644 -2.6866 10 1 5.9908 -0.2692 -1.8178 11 6 6.1840 -0.8665 -3.8579 12 7 5.5687 -1.3483 -4.9158 13 14 8.0044 -0.4562 -3.9425 14 1 8.7992 -1.6489 -3.5541 15 1 8.3578 -0.0556 -5.3282 16 1 8.3034 0.6623 -3.0125 17 6 2.0449 -0.7303 -1.2449 18 1 1.7088 -1.7670 -1.2215 19 6 1.5031 -0.0578 -2.4799 20 6 2.0973 1.0963 -2.9554 21 6 1.6034 1.7106 -4.0911 22 6 0.5088 1.1767 -4.7451 23 6 -0.0886 0.0256 -4.2666 24 6 0.4083 -0.5914 -3.1337 25 1 -0.3633 -1.0276 0.0072 26 1 -0.3633 0.5200 0.8864 27 1 -0.3634 0.5076 -0.8935 28 1 4.4018 -1.6264 1.8650 29 1 4.3708 0.0127 1.1629 30 1 3.6328 -2.5555 -0.3176 31 1 5.1768 -1.6867 -0.4818 32 1 3.8732 -2.0552 -2.8314 33 1 3.4755 -0.4005 -3.3534 34 1 6.0601 -1.4901 -5.7400 35 1 2.9500 1.5157 -2.4421 36 1 2.0699 2.6101 -4.4647 37 1 0.1202 1.6592 -5.6298 38 1 -0.9440 -0.3913 -4.7773 39 1 -0.0586 -1.4904 -2.7597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118421743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = 31.520059 kcal Electronic energy + Delta-G solvation = -20078.605897 eV Core-core repulsion = 17305.107239 eV Total energy + Delta-G solvation = -2773.498658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58948 -37.02666 -33.80417 -32.57256 -30.98287 -30.39904 -29.40568 -27.18615 -24.93882 -22.83434 -22.58942 -21.71149 -20.86211 -19.49391 -16.87495 -16.39512 -15.96263 -15.15643 -14.95411 -14.61307 -14.34424 -14.18335 -13.92053 -13.40252 -13.31420 -12.86110 -12.46324 -12.37237 -12.09267 -11.93172 -11.68875 -11.60115 -11.14202 -11.10392 -10.87486 -10.73112 -10.67263 -10.48167 -10.19304 -9.92971 -9.42718 -9.20458 -8.55880 -8.39800 -8.05256 -7.48932 -7.30587 -6.06029 -4.07836 1.76732 1.89405 2.11078 2.83939 3.27613 3.34675 3.37810 4.21978 4.34190 4.58105 5.12789 5.16026 5.26791 5.30183 5.32469 5.41023 5.48059 5.52694 5.59281 5.68120 5.77565 5.82275 5.92044 5.97136 6.07234 6.16938 6.27422 6.38569 6.40637 6.48979 6.55212 6.86420 6.98175 7.08013 7.27841 7.31331 7.46597 7.73268 8.02880 8.09206 8.45909 8.98860 9.55725 11.04054 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.008161 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.326263 B = 3430.174813 C = 5082.493943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 H 0.093 0.907 4 S -0.295 6.295 5 C -0.069 4.069 6 C 0.064 3.936 7 N -0.543 5.543 8 C 0.187 3.813 9 C -0.510 4.510 10 H 0.062 0.938 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.129 3.871 18 H 0.049 0.951 19 C -0.066 4.066 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.116 4.116 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.100 0.900 32 H -0.013 1.013 33 H 0.054 0.946 34 H 0.261 0.739 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 3.043 6.035 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 H 0.112 0.888 4 S -0.068 6.068 5 C -0.218 4.218 6 C -0.066 4.066 7 N -0.268 5.268 8 C 0.063 3.937 9 C -0.549 4.549 10 H 0.080 0.920 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.019 3.981 18 H 0.067 0.933 19 C -0.067 4.067 20 C -0.090 4.090 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.135 4.135 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.195 3.074 6.905 12.691 hybrid contribution 1.593 -0.311 -1.464 2.186 sum -8.602 2.763 5.441 10.546 Atomic orbital electron populations 1.21649 0.92306 1.02659 1.02441 1.23188 0.98283 1.01363 0.92854 0.88832 1.86532 1.10002 1.78355 1.31868 1.23559 0.92545 1.05090 1.00582 1.22106 1.02231 0.93137 0.89124 1.61370 1.02443 1.53776 1.09193 1.19991 0.95764 0.95040 0.82938 1.21117 0.93661 1.42677 0.97437 0.91999 1.24957 0.98378 0.95364 0.95651 1.69963 1.36178 1.45018 1.02021 0.86561 0.85281 0.78672 0.77286 1.20778 1.21261 1.19814 1.20673 0.90199 0.96650 0.90598 0.93337 1.19610 0.95315 0.95698 0.96125 1.21103 0.98021 0.94243 0.95668 1.21102 0.96630 1.00436 0.96167 1.21031 0.96807 0.96663 0.99634 1.20931 1.00498 0.96472 0.96864 1.20908 0.96780 0.99691 0.96082 0.92019 0.92123 0.90783 0.88409 0.89291 0.94909 0.88181 0.99471 0.92779 0.92931 0.84960 0.86503 0.86845 0.86753 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.77 37.15 0.33 -1.39 16 2 C -0.03 -0.43 2.86 -26.61 -0.08 -0.51 16 3 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 4 S -0.30 -4.62 21.78 -107.50 -2.34 -6.96 16 5 C -0.07 -1.09 6.67 37.29 0.25 -0.84 16 6 C 0.06 1.19 5.26 -3.93 -0.02 1.17 16 7 N -0.54 -11.07 3.80 -229.87 -0.87 -11.95 16 8 C 0.19 4.64 4.04 -4.97 -0.02 4.62 16 9 C -0.51 -13.70 8.25 -34.44 -0.28 -13.98 16 10 H 0.06 1.64 7.28 -52.49 -0.38 1.26 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 13 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.13 2.30 1.66 -68.98 -0.11 2.19 16 18 H 0.05 0.91 7.77 -51.92 -0.40 0.51 16 19 C -0.07 -1.16 2.68 -104.62 -0.28 -1.44 16 20 C -0.07 -1.32 7.14 -39.58 -0.28 -1.60 16 21 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 22 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 24 C -0.12 -1.85 8.68 -39.58 -0.34 -2.19 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.94 6.61 -51.93 -0.34 0.60 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 31 H 0.10 2.02 6.56 -51.93 -0.34 1.68 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.05 1.42 4.61 -51.93 -0.24 1.18 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.13 2.59 7.60 -52.49 -0.40 2.19 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.62 8.04 -52.49 -0.42 1.20 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -28.65 319.04 -10.71 -39.36 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.88 Total: 3.32 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.14 Total: -19.47 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.14 Total: -37.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -2.34 Total: -6.96 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.65 -10.71 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118421743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.883 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds