Wall clock time and date at job start Mon Mar 30 2020 01:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.62846 * 2 1 4 4 S 1.81896 * 109.63178 * 239.40250 * 2 1 3 5 5 C 1.81902 * 101.91654 * 291.59992 * 4 2 1 6 6 C 1.53248 * 108.50388 * 308.69540 * 5 4 2 7 7 N 1.46471 * 109.85891 * 62.00179 * 6 5 4 8 8 C 1.46906 * 110.99900 * 162.23203 * 7 6 5 9 9 C 1.50702 * 109.47055 * 60.91024 * 8 7 6 10 10 H 1.07999 * 120.00115 * 5.38874 * 9 8 7 11 11 C 1.37875 * 119.99825 * 185.39169 * 9 8 7 12 12 N 1.31515 * 120.00286 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47128 * 60.00001 * 13 11 9 15 15 H 1.48498 * 109.47083 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47080 * 299.99767 * 13 11 9 17 17 C 1.46470 * 112.56135 * 287.34071 * 7 6 5 18 18 H 1.09002 * 109.40310 * 312.53990 * 17 7 6 19 19 C 1.50694 * 109.34226 * 192.73646 * 17 7 6 20 20 C 1.38240 * 120.00231 * 319.37154 * 19 17 7 21 21 C 1.38232 * 119.99943 * 179.79116 * 20 19 17 22 22 C 1.38238 * 119.99921 * 0.45986 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.76775 * 22 21 20 24 24 C 1.38230 * 120.00021 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47682 * 299.60840 * 1 2 3 26 26 H 1.09004 * 109.47053 * 59.60959 * 1 2 3 27 27 H 1.08999 * 109.47175 * 179.60639 * 1 2 3 28 28 H 1.08994 * 109.63275 * 188.98977 * 5 4 2 29 29 H 1.09004 * 109.79053 * 68.49454 * 5 4 2 30 30 H 1.09000 * 109.40643 * 301.88470 * 6 5 4 31 31 H 1.09001 * 109.40443 * 182.12032 * 6 5 4 32 32 H 1.09001 * 109.47160 * 180.91123 * 8 7 6 33 33 H 1.08996 * 109.46974 * 300.90863 * 8 7 6 34 34 H 0.96995 * 120.00188 * 180.02562 * 12 11 9 35 35 H 1.08003 * 119.99723 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.99762 * 180.25318 * 21 20 19 37 37 H 1.07997 * 119.99975 * 179.79442 * 22 21 20 38 38 H 1.07995 * 119.99746 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99822 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 16 2.1411 -0.8720 -1.4747 5 6 1.6502 -2.5886 -1.1264 6 6 2.1485 -2.9624 0.2738 7 7 1.5187 -2.0968 1.2736 8 6 1.6324 -2.6768 2.6185 9 6 3.0878 -2.8232 2.9811 10 1 3.8503 -2.4372 2.3208 11 6 3.4459 -3.4501 4.1556 12 7 2.5175 -3.9199 4.9599 13 14 5.2500 -3.6323 4.6046 14 1 5.8717 -2.2879 4.7115 15 1 5.3673 -4.3363 5.9069 16 1 5.9450 -4.4170 3.5529 17 6 2.0448 -0.7301 1.2451 18 1 3.1341 -0.7619 1.2219 19 6 1.5915 0.0050 2.4800 20 6 0.3022 -0.1623 2.9499 21 6 -0.1123 0.5087 4.0851 22 6 0.7595 1.3545 4.7451 23 6 2.0473 1.5254 4.2726 24 6 2.4631 0.8511 3.1398 25 1 -0.3634 0.5077 0.8934 26 1 -0.3633 0.5199 -0.8865 27 1 -0.3633 -1.0276 -0.0071 28 1 2.0977 -3.2544 -1.8642 29 1 0.5644 -2.6769 -1.1643 30 1 3.2306 -2.8389 0.3180 31 1 1.8948 -4.0016 0.4830 32 1 1.1425 -2.0219 3.3392 33 1 1.1539 -3.6560 2.6336 34 1 2.7694 -4.3606 5.7864 35 1 -0.3803 -0.8196 2.4316 36 1 -1.1183 0.3748 4.4544 37 1 0.4347 1.8813 5.6301 38 1 2.7283 2.1865 4.7880 39 1 3.4691 0.9850 2.7704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118421746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:42 Heat of formation + Delta-G solvation = 20.720866 kcal Electronic energy + Delta-G solvation = -20447.116030 eV Core-core repulsion = 17673.149083 eV Total energy + Delta-G solvation = -2773.966946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01208 -38.50534 -35.18269 -34.16485 -32.41267 -31.78635 -30.65013 -28.50776 -26.83771 -24.57440 -23.56875 -23.12297 -22.67219 -20.61947 -18.75343 -17.54792 -17.22398 -16.87577 -16.49952 -16.18870 -15.93554 -15.58972 -15.01311 -14.85698 -14.46573 -14.15605 -14.06865 -13.77825 -13.43434 -13.28263 -13.03648 -12.93550 -12.74961 -12.68210 -12.34364 -12.24143 -12.07714 -11.90672 -11.76687 -11.66952 -11.34760 -10.59575 -10.53103 -9.60804 -9.37453 -9.10140 -8.61082 -8.13121 -6.28476 0.58054 0.66601 0.90801 1.33701 1.34526 1.41527 1.57242 2.36613 2.97915 3.11170 3.18956 3.88795 3.90883 4.03640 4.15048 4.19902 4.29317 4.35451 4.35902 4.42465 4.47988 4.72662 4.78084 4.86362 4.90851 4.99427 5.04700 5.08974 5.20732 5.29498 5.30693 5.39475 5.45239 5.69166 5.74192 5.79193 5.83453 6.06784 6.21899 6.27568 6.49948 6.88676 7.40678 8.88975 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.009232 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.458317 B = 3032.220033 C = 4331.663892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 H 0.109 0.891 4 S -0.295 6.295 5 C -0.059 4.059 6 C 0.068 3.932 7 N -0.533 5.533 8 C 0.197 3.803 9 C -0.543 4.543 10 H 0.044 0.956 11 C 0.021 3.979 12 N -0.920 5.920 13 Si 0.940 3.060 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.144 3.856 18 H 0.029 0.971 19 C -0.064 4.064 20 C -0.096 4.096 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.128 4.128 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 8.988 -6.747 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 H 0.127 0.873 4 S -0.067 6.067 5 C -0.207 4.207 6 C -0.062 4.062 7 N -0.256 5.256 8 C 0.072 3.928 9 C -0.582 4.582 10 H 0.063 0.937 11 C -0.179 4.179 12 N -0.559 5.559 13 Si 0.766 3.234 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.198 1.198 17 C 0.034 3.966 18 H 0.047 0.953 19 C -0.066 4.066 20 C -0.115 4.115 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.146 4.146 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.336 9.314 -7.666 12.819 hybrid contribution 1.524 -1.126 1.823 2.630 sum -2.812 8.188 -5.843 10.444 Atomic orbital electron populations 1.21963 0.91469 1.02991 1.02388 1.23224 1.00495 1.00031 0.91777 0.87340 1.86563 1.79928 1.08697 1.31498 1.23527 1.04841 0.93494 0.98878 1.21970 0.96382 0.97348 0.90460 1.61681 1.56025 1.01013 1.06921 1.19677 0.94266 0.93734 0.85157 1.21806 0.94084 1.37009 1.05280 0.93737 1.25578 1.00542 0.95281 0.96471 1.70021 1.34111 1.39477 1.12337 0.85887 0.81676 0.78293 0.77534 1.19970 1.20863 1.19835 1.20400 0.95670 0.88862 0.91664 0.95266 1.19581 0.94387 0.96337 0.96287 1.21049 0.95615 0.98111 0.96695 1.21381 1.00820 0.97527 0.95764 1.21360 0.93814 0.99155 1.00298 1.21270 0.96926 1.00484 0.96269 1.21089 0.98950 0.97809 0.96790 0.91325 0.91209 0.91944 0.86237 0.88489 0.95559 0.90911 0.94387 0.97948 0.92888 0.85895 0.84561 0.84034 0.84554 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.00 71.98 0.58 -2.94 16 2 C -0.03 -0.80 2.97 30.68 0.09 -0.71 16 3 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 4 S -0.30 -8.93 21.80 -56.49 -1.23 -10.16 16 5 C -0.06 -1.71 6.33 72.07 0.46 -1.25 16 6 C 0.07 2.53 4.77 86.47 0.41 2.94 16 7 N -0.53 -21.15 3.18 -881.14 -2.80 -23.95 16 8 C 0.20 9.75 4.35 85.56 0.37 10.12 16 9 C -0.54 -29.15 7.81 25.60 0.20 -28.95 16 10 H 0.04 2.42 6.21 -2.91 -0.02 2.41 16 11 C 0.02 1.16 5.46 84.65 0.46 1.63 16 12 N -0.92 -53.62 13.29 21.45 0.28 -53.33 16 13 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C 0.14 5.35 1.32 44.33 0.06 5.41 16 18 H 0.03 1.25 6.93 -2.39 -0.02 1.24 16 19 C -0.06 -2.36 3.43 -19.87 -0.07 -2.43 16 20 C -0.10 -3.38 4.93 22.27 0.11 -3.27 16 21 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16 22 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 23 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 24 C -0.13 -4.54 9.67 22.27 0.22 -4.32 16 25 H 0.07 1.86 5.59 -2.39 -0.01 1.85 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.81 6.68 -2.39 -0.02 1.80 16 28 H 0.12 2.93 8.14 -2.39 -0.02 2.92 16 29 H 0.10 2.64 7.55 -2.38 -0.02 2.62 16 30 H 0.03 1.08 7.06 -2.39 -0.02 1.07 16 31 H 0.07 2.79 7.90 -2.39 -0.02 2.77 16 32 H 0.04 1.99 4.77 -2.39 -0.01 1.97 16 33 H 0.00 0.13 8.05 -2.39 -0.02 0.11 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.12 4.33 6.73 -2.91 -0.02 4.31 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.11 3.87 8.03 -2.91 -0.02 3.85 16 Total: -1.00 -59.87 310.70 2.86 -57.00 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.03 Total: 19.69 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.56 Total: -35.27 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.52 Total: -77.28 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.23 Total: -10.16 kcal Total: -59.87 2.86 -57.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118421746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.725 kcal (2) G-P(sol) polarization free energy of solvation -59.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds