Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99738 * 2 1 4 4 C 1.50699 * 109.46928 * 85.00452 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 S 1.65593 * 120.00121 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40615 * 23.53545 * 12 2 1 14 14 O 1.42104 * 106.40292 * 156.45650 * 12 2 1 15 15 N 1.65599 * 107.21881 * 269.99549 * 12 2 1 16 16 C 1.46927 * 120.63223 * 269.72354 * 15 12 2 17 17 C 1.53618 * 108.54344 * 126.36785 * 16 15 12 18 18 C 1.53037 * 109.24403 * 54.85699 * 17 16 15 19 19 C 1.53040 * 109.53690 * 298.50789 * 18 17 16 20 20 H 1.08995 * 109.52599 * 301.39990 * 19 18 17 21 21 N 1.46899 * 109.49892 * 181.31482 * 19 18 17 22 22 C 1.46930 * 120.62717 * 89.99982 * 15 12 2 23 23 H 1.08990 * 109.47206 * 89.99463 * 1 2 3 24 24 H 1.08995 * 109.46780 * 209.99906 * 1 2 3 25 25 H 1.09007 * 109.46924 * 329.99277 * 1 2 3 26 26 H 1.09004 * 109.47073 * 205.00280 * 3 2 1 27 27 H 1.09000 * 109.47212 * 325.00363 * 3 2 1 28 28 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.58523 * 246.20142 * 16 15 12 30 30 H 1.09000 * 109.58728 * 6.62108 * 16 15 12 31 31 H 1.08994 * 109.63409 * 294.86140 * 17 16 15 32 32 H 1.09002 * 109.45653 * 174.74061 * 17 16 15 33 33 H 1.09002 * 109.46022 * 178.49251 * 18 17 16 34 34 H 1.09001 * 109.44921 * 58.52305 * 18 17 16 35 35 H 1.00904 * 110.99642 * 60.16683 * 21 19 18 36 36 H 1.00901 * 111.00092 * 184.11422 * 21 19 18 37 37 H 1.08992 * 109.58928 * 353.37462 * 22 15 12 38 38 H 1.09001 * 109.58788 * 113.80304 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9290 1.1933 2.2332 6 6 3.0006 2.9503 1.6665 7 7 3.5033 3.6470 0.6707 8 14 3.1785 3.5666 3.4209 9 1 2.5302 2.6071 4.3507 10 1 4.6194 3.6868 3.7597 11 1 2.5279 4.8954 3.5472 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5454 14 8 3.5760 -1.1564 -0.5450 15 7 2.5383 -1.8592 1.5809 16 6 3.7469 -1.4243 2.2943 17 6 3.3215 -0.7160 3.5894 18 6 2.4150 -1.6462 4.3987 19 6 1.1561 -1.9657 3.5891 20 1 0.6348 -1.0400 3.3457 21 7 0.2721 -2.8331 4.3791 22 6 1.5542 -2.6836 2.2957 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 3.1858 1.1178 -0.4344 27 1 1.6501 2.0044 -0.5894 28 1 3.9667 4.4806 0.8473 29 1 4.3617 -2.2919 2.5340 30 1 4.3127 -0.7348 1.6679 31 1 2.7803 0.1982 3.3460 32 1 4.2066 -0.4697 4.1760 33 1 2.1326 -1.1573 5.3311 34 1 2.9485 -2.5705 4.6203 35 1 -0.0045 -2.3814 5.2380 36 1 -0.5347 -3.1128 3.8416 37 1 0.6729 -2.8251 1.6702 38 1 1.9938 -3.6517 2.5356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122381564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = -77.505993 kcal Electronic energy + Delta-G solvation = -21871.191005 eV Core-core repulsion = 18682.115360 eV Total energy + Delta-G solvation = -3189.075646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.43513 -36.72107 -35.49150 -35.22154 -33.94711 -32.53439 -31.62007 -28.29681 -27.78173 -25.14563 -24.23156 -22.53361 -22.09977 -19.90047 -18.34446 -17.31941 -16.79375 -16.41852 -15.97124 -15.44526 -15.04205 -14.58136 -14.36886 -14.22258 -13.48999 -13.43709 -13.20131 -12.94222 -12.38830 -12.28615 -12.21445 -11.72422 -11.58530 -11.52041 -11.44371 -11.21566 -11.16041 -11.00102 -10.65377 -10.51285 -10.48085 -10.36002 -9.99112 -9.61373 -8.78154 -8.62192 -8.52307 -8.03090 -6.15534 -4.21900 1.24868 3.18890 3.27020 3.28558 3.43808 4.11607 4.30870 4.49140 4.82096 5.01386 5.06813 5.18647 5.33653 5.38267 5.51928 5.61743 5.64544 5.77581 5.99843 6.03596 6.06979 6.10845 6.23403 6.25884 6.32040 6.50176 6.60210 6.75969 6.89920 7.14879 7.32506 7.38676 7.42819 7.61980 7.82799 8.12251 8.83392 9.43576 10.92620 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.009922 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.066712 B = 2821.323376 C = 3773.697368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.997 5.997 3 C 0.243 3.757 4 C -0.538 4.538 5 H 0.068 0.932 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.887 3.113 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.285 1.285 12 S 2.787 3.213 13 O -1.000 7.000 14 O -0.976 6.976 15 N -1.002 6.002 16 C 0.131 3.869 17 C -0.147 4.147 18 C -0.104 4.104 19 C 0.074 3.926 20 H 0.046 0.954 21 N -0.847 5.847 22 C 0.134 3.866 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.342 0.658 36 H 0.340 0.660 37 H 0.079 0.921 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -9.079 6.167 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.577 4.577 5 H 0.086 0.914 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.211 1.211 12 S 2.795 3.205 13 O -0.984 6.984 14 O -0.960 6.960 15 N -0.840 5.840 16 C 0.006 3.994 17 C -0.186 4.186 18 C -0.142 4.142 19 C -0.038 4.038 20 H 0.064 0.936 21 N -0.377 5.377 22 C 0.007 3.993 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.866 -9.889 5.346 11.888 hybrid contribution -0.779 1.593 1.318 2.210 sum -4.645 -8.296 6.664 11.611 Atomic orbital electron populations 1.21189 0.80321 1.01785 1.00571 1.57684 1.14069 1.23573 1.88593 1.19229 0.92177 0.78894 0.97583 1.21644 1.36440 1.06680 0.92922 0.91376 1.24937 0.95302 0.96553 0.96984 1.69937 1.36768 1.15141 1.30790 0.86625 0.78061 0.78909 0.84892 1.19518 1.20763 1.21069 1.01768 0.73107 0.72637 0.72939 1.93524 1.67436 1.60425 1.77001 1.93570 1.40746 1.85241 1.76421 1.58174 1.29125 1.64994 1.31730 1.21392 0.85344 0.98483 0.94199 1.22210 1.00100 1.00372 0.95890 1.21441 0.95427 0.99668 0.97656 1.21716 0.94227 0.94266 0.93619 0.93634 1.58692 1.23012 1.46781 1.09228 1.21192 0.91771 0.93750 0.92563 0.93758 0.93266 0.90912 0.93128 0.94521 0.92626 0.92226 0.88428 0.88643 0.91309 0.92550 0.91641 0.84604 0.84830 0.90218 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.84 10.31 59.85 0.62 2.45 16 2 N -1.00 -20.39 3.23 -123.05 -0.40 -20.78 16 3 C 0.24 5.90 5.41 -5.19 -0.03 5.87 16 4 C -0.54 -13.33 8.99 -34.44 -0.31 -13.64 16 5 H 0.07 1.61 5.51 -52.48 -0.29 1.32 16 6 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 8 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 S 2.79 55.99 6.07 -107.50 -0.65 55.34 16 13 O -1.00 -20.62 15.93 -57.17 -0.91 -21.53 16 14 O -0.98 -22.66 15.40 -57.17 -0.88 -23.54 16 15 N -1.00 -17.10 3.34 -113.27 -0.38 -17.47 16 16 C 0.13 2.18 6.41 -3.49 -0.02 2.15 16 17 C -0.15 -2.31 6.10 -26.39 -0.16 -2.47 16 18 C -0.10 -1.40 5.46 -26.69 -0.15 -1.55 16 19 C 0.07 0.99 3.40 -67.59 -0.23 0.76 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 N -0.85 -9.07 9.25 -4.56 -0.04 -9.11 16 22 C 0.13 1.94 5.92 -3.71 -0.02 1.92 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 25 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 26 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 27 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.84 7.12 -51.93 -0.37 1.47 16 31 H 0.10 1.78 5.31 -51.93 -0.28 1.50 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.34 3.20 9.04 -39.29 -0.36 2.84 16 36 H 0.34 3.15 8.99 -39.29 -0.35 2.80 16 37 H 0.08 1.13 7.13 -51.93 -0.37 0.76 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -30.08 314.10 -8.92 -39.00 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.71 Total: 5.41 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.40 Total: -2.91 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -0.08 Total: -71.36 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.79 Total: -45.07 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.65 Total: 55.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.08 -8.92 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122381564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.502 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds