Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99738 * 2 1 4 4 C 1.50699 * 109.46928 * 85.00452 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 S 1.65593 * 120.00121 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40615 * 23.53545 * 12 2 1 14 14 O 1.42104 * 106.40292 * 156.45650 * 12 2 1 15 15 N 1.65599 * 107.21881 * 269.99549 * 12 2 1 16 16 C 1.46927 * 120.63223 * 269.72354 * 15 12 2 17 17 C 1.53618 * 108.54344 * 126.36785 * 16 15 12 18 18 C 1.53037 * 109.24403 * 54.85699 * 17 16 15 19 19 C 1.53040 * 109.53690 * 298.50789 * 18 17 16 20 20 H 1.08995 * 109.52599 * 301.39990 * 19 18 17 21 21 N 1.46899 * 109.49892 * 181.31482 * 19 18 17 22 22 C 1.46930 * 120.62717 * 89.99982 * 15 12 2 23 23 H 1.08990 * 109.47206 * 89.99463 * 1 2 3 24 24 H 1.08995 * 109.46780 * 209.99906 * 1 2 3 25 25 H 1.09007 * 109.46924 * 329.99277 * 1 2 3 26 26 H 1.09004 * 109.47073 * 205.00280 * 3 2 1 27 27 H 1.09000 * 109.47212 * 325.00363 * 3 2 1 28 28 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.58523 * 246.20142 * 16 15 12 30 30 H 1.09000 * 109.58728 * 6.62108 * 16 15 12 31 31 H 1.08994 * 109.63409 * 294.86140 * 17 16 15 32 32 H 1.09002 * 109.45653 * 174.74061 * 17 16 15 33 33 H 1.09002 * 109.46022 * 178.49251 * 18 17 16 34 34 H 1.09001 * 109.44921 * 58.52305 * 18 17 16 35 35 H 1.00904 * 110.99642 * 60.16683 * 21 19 18 36 36 H 1.00901 * 111.00092 * 184.11422 * 21 19 18 37 37 H 1.08992 * 109.58928 * 353.37462 * 22 15 12 38 38 H 1.09001 * 109.58788 * 113.80304 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9290 1.1933 2.2332 6 6 3.0006 2.9503 1.6665 7 7 3.5033 3.6470 0.6707 8 14 3.1785 3.5666 3.4209 9 1 2.5302 2.6071 4.3507 10 1 4.6194 3.6868 3.7597 11 1 2.5279 4.8954 3.5472 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5454 14 8 3.5760 -1.1564 -0.5450 15 7 2.5383 -1.8592 1.5809 16 6 3.7469 -1.4243 2.2943 17 6 3.3215 -0.7160 3.5894 18 6 2.4150 -1.6462 4.3987 19 6 1.1561 -1.9657 3.5891 20 1 0.6348 -1.0400 3.3457 21 7 0.2721 -2.8331 4.3791 22 6 1.5542 -2.6836 2.2957 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 3.1858 1.1178 -0.4344 27 1 1.6501 2.0044 -0.5894 28 1 3.9667 4.4806 0.8473 29 1 4.3617 -2.2919 2.5340 30 1 4.3127 -0.7348 1.6679 31 1 2.7803 0.1982 3.3460 32 1 4.2066 -0.4697 4.1760 33 1 2.1326 -1.1573 5.3311 34 1 2.9485 -2.5705 4.6203 35 1 -0.0045 -2.3814 5.2380 36 1 -0.5347 -3.1128 3.8416 37 1 0.6729 -2.8251 1.6702 38 1 1.9938 -3.6517 2.5356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122381564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = -101.282083 kcal Electronic energy + Delta-G solvation = -21872.222014 eV Core-core repulsion = 18682.115360 eV Total energy + Delta-G solvation = -3190.106654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61775 -38.40279 -37.20294 -36.92209 -35.05014 -34.46085 -32.84414 -29.69329 -29.28348 -26.80356 -25.48788 -24.24399 -23.41419 -21.13067 -19.83121 -18.85363 -18.57136 -18.20891 -17.41747 -16.70092 -16.28211 -16.05784 -15.68492 -15.48220 -15.09173 -14.96448 -14.61062 -14.20884 -13.98111 -13.95158 -13.57629 -13.41268 -13.04832 -13.01585 -12.99318 -12.90645 -12.66263 -12.53101 -12.43657 -12.08005 -11.88718 -11.69305 -11.49431 -11.23824 -10.57625 -9.99870 -9.72330 -9.58552 -8.14634 -6.27061 -0.34142 1.41902 1.44408 1.54417 1.92914 2.42739 2.54875 3.17855 3.30813 3.55425 3.77870 3.95426 4.04743 4.18707 4.20111 4.43744 4.46453 4.57875 4.67260 4.76832 4.85195 4.92014 4.95229 5.03343 5.13818 5.20013 5.27069 5.33229 5.45579 5.54738 5.61778 5.83333 5.95574 6.14505 6.24784 6.64653 6.86121 7.42499 8.94268 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.009922 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.066712 B = 2821.323376 C = 3773.697368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.003 6.003 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.082 0.918 6 C 0.013 3.987 7 N -0.931 5.931 8 Si 0.950 3.050 9 H -0.250 1.250 10 H -0.283 1.283 11 H -0.287 1.287 12 S 2.797 3.203 13 O -1.004 7.004 14 O -1.013 7.013 15 N -0.997 5.997 16 C 0.127 3.873 17 C -0.144 4.144 18 C -0.098 4.098 19 C 0.080 3.920 20 H 0.031 0.969 21 N -0.841 5.841 22 C 0.128 3.872 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.263 0.737 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.352 0.648 36 H 0.349 0.651 37 H 0.084 0.916 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -10.503 8.629 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.844 5.844 3 C 0.133 3.867 4 C -0.569 4.569 5 H 0.100 0.900 6 C -0.187 4.187 7 N -0.572 5.572 8 Si 0.775 3.225 9 H -0.173 1.173 10 H -0.209 1.209 11 H -0.213 1.213 12 S 2.806 3.194 13 O -0.988 6.988 14 O -0.997 6.997 15 N -0.838 5.838 16 C 0.002 3.998 17 C -0.184 4.184 18 C -0.136 4.136 19 C -0.033 4.033 20 H 0.049 0.951 21 N -0.373 5.373 22 C 0.003 3.997 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.981 -11.342 7.815 14.647 hybrid contribution -0.478 1.948 0.525 2.074 sum -5.459 -9.394 8.340 13.697 Atomic orbital electron populations 1.21425 0.78202 1.03128 1.01784 1.57596 1.15528 1.22206 1.89107 1.18799 0.90702 0.80027 0.97143 1.21908 1.35326 1.06359 0.93298 0.89998 1.25755 0.95176 0.96967 1.00758 1.70077 1.38218 1.15749 1.33112 0.85634 0.77874 0.78403 0.80593 1.17331 1.20903 1.21328 1.01272 0.72184 0.72341 0.73590 1.93509 1.67365 1.60253 1.77708 1.93519 1.42673 1.85702 1.77850 1.57925 1.29954 1.65066 1.30847 1.21484 0.85217 0.99137 0.93975 1.22153 1.00872 0.99500 0.95828 1.21399 0.95033 0.99642 0.97560 1.21550 0.94598 0.93840 0.93272 0.95140 1.58631 1.23356 1.45905 1.09405 1.21440 0.91330 0.93969 0.92990 0.92700 0.90733 0.90723 0.96544 0.96424 0.92755 0.89497 0.91496 0.91562 0.89951 0.91391 0.90441 0.83416 0.83729 0.89814 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.29 10.31 127.77 1.32 4.61 16 2 N -1.00 -41.15 3.23 -543.21 -1.75 -42.90 16 3 C 0.26 12.84 5.41 85.63 0.46 13.31 16 4 C -0.53 -26.45 8.99 25.60 0.23 -26.22 16 5 H 0.08 3.81 5.51 -2.91 -0.02 3.79 16 6 C 0.01 0.66 5.46 84.65 0.46 1.12 16 7 N -0.93 -53.25 13.29 21.45 0.28 -52.97 16 8 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 9 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 S 2.80 112.01 6.07 -56.49 -0.34 111.67 16 13 O -1.00 -40.32 15.93 -128.00 -2.04 -42.36 16 14 O -1.01 -48.40 15.40 -128.00 -1.97 -50.37 16 15 N -1.00 -32.68 3.34 -512.28 -1.71 -34.39 16 16 C 0.13 4.06 6.41 86.51 0.55 4.62 16 17 C -0.14 -4.24 6.10 30.81 0.19 -4.05 16 18 C -0.10 -2.32 5.46 30.62 0.17 -2.15 16 19 C 0.08 1.89 3.40 44.99 0.15 2.04 16 20 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 21 N -0.84 -14.89 9.25 -168.36 -1.56 -16.45 16 22 C 0.13 3.36 5.92 86.36 0.51 3.87 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 25 H 0.07 2.41 8.07 -2.38 -0.02 2.39 16 26 H 0.02 0.93 6.91 -2.38 -0.02 0.92 16 27 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.07 2.56 7.12 -2.39 -0.02 2.55 16 31 H 0.07 2.35 5.31 -2.39 -0.01 2.34 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.35 5.25 9.04 -89.69 -0.81 4.44 16 36 H 0.35 5.23 8.99 -89.69 -0.81 4.42 16 37 H 0.08 2.13 7.13 -2.39 -0.02 2.11 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.01 314.10 -3.56 -68.56 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.54 Total: 19.50 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.05 Total: -2.86 kcal Atomic # 7 Polarization: -141.98 SS G_CDS: -4.74 Total: -146.71 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -4.01 Total: -92.73 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 112.01 SS G_CDS: -0.34 Total: 111.67 kcal Total: -65.01 -3.56 -68.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122381564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.719 kcal (2) G-P(sol) polarization free energy of solvation -65.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds