Wall clock time and date at job start Mon Mar 30 2020 02:02:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46905 * 1
3 3 C 1.46901 * 110.99870 * 2 1
4 4 H 1.08999 * 110.64443 * 36.68189 * 3 2 1
5 5 C 1.55156 * 110.71772 * 273.54547 * 3 2 1
6 6 C 1.54912 * 101.58220 * 206.13414 * 5 3 2
7 7 N 1.47428 * 104.83065 * 37.01080 * 6 5 3
8 8 S 1.65594 * 125.64957 * 155.90674 * 7 6 5
9 9 O 1.42103 * 106.40505 * 203.51442 * 8 7 6
10 10 O 1.42100 * 106.40513 * 336.43279 * 8 7 6
11 11 N 1.65599 * 107.21829 * 89.97759 * 8 7 6
12 12 C 1.46493 * 120.00349 * 89.99964 * 11 8 7
13 13 C 1.46507 * 119.99742 * 270.00050 * 11 8 7
14 14 C 1.50695 * 109.46991 * 94.99796 * 13 11 8
15 15 H 1.07995 * 120.00461 * 0.02562 * 14 13 11
16 16 C 1.37882 * 119.99706 * 179.97438 * 14 13 11
17 17 N 1.31517 * 120.00406 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 119.99800 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.47513 * 60.00270 * 18 16 14
20 20 H 1.48506 * 109.46949 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.47083 * 300.00028 * 18 16 14
22 22 C 1.47028 * 108.69968 * 335.87124 * 7 6 5
23 23 H 1.09001 * 109.46798 * 300.00327 * 1 2 3
24 24 H 1.08998 * 109.46961 * 60.00043 * 1 2 3
25 25 H 1.08996 * 109.46906 * 180.02562 * 1 2 3
26 26 H 1.00901 * 110.99869 * 236.04711 * 2 1 3
27 27 H 1.08997 * 111.00675 * 324.20810 * 5 3 2
28 28 H 1.09004 * 111.00589 * 88.06019 * 5 3 2
29 29 H 1.09001 * 110.37022 * 155.84392 * 6 5 3
30 30 H 1.08998 * 110.36586 * 278.17369 * 6 5 3
31 31 H 1.09004 * 109.47333 * 90.00118 * 12 11 8
32 32 H 1.09002 * 109.47302 * 210.00089 * 12 11 8
33 33 H 1.09005 * 109.47004 * 329.99754 * 12 11 8
34 34 H 1.09002 * 109.46904 * 215.00115 * 13 11 8
35 35 H 1.09005 * 109.47086 * 334.99673 * 13 11 8
36 36 H 0.96990 * 120.00367 * 179.97438 * 17 16 14
37 37 H 1.08996 * 109.88053 * 241.63964 * 22 7 6
38 38 H 1.09005 * 109.87906 * 120.47952 * 22 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 1 1.3695 2.0234 0.6093
5 6 2.1084 1.9160 -1.4485
6 6 3.2384 2.9652 -1.2991
7 7 4.1825 2.3684 -0.3368
8 16 5.7925 2.7345 -0.2108
9 8 6.4134 1.6103 0.3974
10 8 6.1868 3.2508 -1.4747
11 7 5.9282 3.9839 0.8677
12 6 6.1033 3.7038 2.2949
13 6 5.8732 5.3693 0.3944
14 6 4.4640 5.8878 0.5213
15 1 3.6871 5.2495 0.9154
16 6 4.1667 7.1776 0.1351
17 7 5.1128 7.9552 -0.3444
18 14 2.4200 7.8207 0.2930
19 1 1.9991 7.7663 1.7161
20 1 2.3642 9.2250 -0.1868
21 1 1.5078 6.9819 -0.5253
22 6 3.4575 1.3951 0.4931
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0276 0.0005
26 1 1.8306 -0.5261 -0.7814
27 1 2.3978 1.1261 -2.1414
28 1 1.1769 2.3871 -1.7625
29 1 3.7293 3.1331 -2.2577
30 1 2.8383 3.9005 -0.9077
31 1 7.1667 3.6319 2.5233
32 1 5.6595 4.5091 2.8803
33 1 5.6138 2.7619 2.5430
34 1 6.5426 5.9852 0.9950
35 1 6.1824 5.4090 -0.6501
36 1 4.9036 8.8624 -0.6163
37 1 3.4913 1.7014 1.5386
38 1 3.9031 0.4067 0.3797
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122769104.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:54
Heat of formation + Delta-G solvation = -67.630058 kcal
Electronic energy + Delta-G solvation = -21139.647115 eV
Core-core repulsion = 17950.999722 eV
Total energy + Delta-G solvation = -3188.647393 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 277.125 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-38.73096 -36.62836 -35.45554 -35.19195 -34.83126 -32.49473 -29.79343 -28.55990
-27.76617 -25.07183 -24.57458 -22.38965 -21.96904 -20.88699 -18.42034 -17.34210
-16.90170 -16.38174 -16.14098 -15.45325 -15.27440 -14.58536 -14.20028 -13.75120
-13.43605 -13.37799 -13.24235 -12.70757 -12.60673 -12.33840 -12.18012 -12.08438
-11.78941 -11.68773 -11.50653 -11.19425 -11.17208 -11.13485 -11.09117 -10.78515
-10.67980 -10.51579 -10.10516 -9.80072 -8.63857 -8.54471 -8.49617 -8.03226
-6.12613 -4.19365 1.25319 3.22604 3.28871 3.29381 3.49232 4.03139
4.17815 4.33798 4.65556 4.70730 4.98580 5.11076 5.21163 5.24859
5.33063 5.47834 5.57721 5.61420 5.72361 5.77753 5.84169 6.00422
6.07300 6.10221 6.24254 6.35420 6.47831 6.55616 6.76170 6.86960
7.20084 7.33716 7.43686 7.64274 7.84452 8.14263 8.85262 9.46213
10.95439
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.014858 B = 0.007991 C = 0.005947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.065207 B = 3503.285858 C = 4706.995540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.686 5.686
3 C 0.078 3.922
4 H 0.095 0.905
5 C -0.160 4.160
6 C 0.124 3.876
7 N -1.017 6.017
8 S 2.802 3.198
9 O -0.996 6.996
10 O -0.975 6.975
11 N -0.997 5.997
12 C 0.107 3.893
13 C 0.244 3.756
14 C -0.539 4.539
15 H 0.062 0.938
16 C 0.064 3.936
17 N -0.889 5.889
18 Si 0.894 3.106
19 H -0.277 1.277
20 H -0.286 1.286
21 H -0.276 1.276
22 C 0.135 3.865
23 H 0.065 0.935
24 H 0.023 0.977
25 H 0.066 0.934
26 H 0.344 0.656
27 H 0.072 0.928
28 H 0.077 0.923
29 H 0.079 0.921
30 H 0.081 0.919
31 H 0.044 0.956
32 H 0.073 0.927
33 H 0.052 0.948
34 H 0.038 0.962
35 H 0.051 0.949
36 H 0.265 0.735
37 H 0.064 0.936
38 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.555 -12.079 0.969 14.280
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 N -0.316 5.316
3 C -0.033 4.033
4 H 0.113 0.887
5 C -0.201 4.201
6 C -0.002 4.002
7 N -0.856 5.856
8 S 2.812 3.188
9 O -0.980 6.980
10 O -0.959 6.959
11 N -0.839 5.839
12 C -0.040 4.040
13 C 0.122 3.878
14 C -0.578 4.578
15 H 0.080 0.920
16 C -0.139 4.139
17 N -0.528 5.528
18 Si 0.721 3.279
19 H -0.202 1.202
20 H -0.212 1.212
21 H -0.201 1.201
22 C 0.008 3.992
23 H 0.084 0.916
24 H 0.042 0.958
25 H 0.085 0.915
26 H 0.162 0.838
27 H 0.091 0.909
28 H 0.096 0.904
29 H 0.098 0.902
30 H 0.099 0.901
31 H 0.063 0.937
32 H 0.091 0.909
33 H 0.071 0.929
34 H 0.056 0.944
35 H 0.069 0.931
36 H 0.075 0.925
37 H 0.083 0.917
38 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -6.645 -12.361 1.148 14.080
hybrid contribution -1.556 1.089 -0.567 1.982
sum -8.201 -11.272 0.581 13.952
Atomic orbital electron populations
1.22189 0.87617 1.01701 1.00586 1.60375 1.07854 1.13330 1.50064
1.22682 0.95743 0.89252 0.95645 0.88726 1.23486 0.99331 0.99723
0.97572 1.21906 0.89262 0.96166 0.92882 1.59099 1.27602 1.52660
1.46215 1.01263 0.71866 0.72402 0.73316 1.93534 1.73999 1.51839
1.78636 1.93566 1.80528 1.80409 1.41426 1.57701 1.86854 1.21846
1.17452 1.21217 1.00204 1.00594 0.81978 1.19217 0.97448 0.74819
0.96350 1.21512 0.94819 0.98120 1.43382 0.91979 1.24962 0.97271
0.96729 0.94945 1.69920 1.32517 1.08180 1.42142 0.86638 0.84715
0.78047 0.78452 1.20250 1.21199 1.20125 1.21484 0.91140 0.92463
0.94109 0.91625 0.95838 0.91540 0.83810 0.90916 0.90389 0.90218
0.90109 0.93736 0.90860 0.92939 0.94441 0.93135 0.92514 0.91735
0.90961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 10.56 60.07 0.63 0.88 16
2 N -0.69 -7.08 6.64 -112.06 -0.74 -7.82 16
3 C 0.08 0.94 3.24 -65.88 -0.21 0.73 16
4 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16
5 C -0.16 -1.94 6.63 -24.58 -0.16 -2.10 16
6 C 0.12 2.00 7.11 -2.53 -0.02 1.98 16
7 N -1.02 -17.57 3.76 -111.42 -0.42 -17.99 16
8 S 2.80 57.58 6.31 -107.50 -0.68 56.91 16
9 O -1.00 -21.05 16.79 -57.17 -0.96 -22.01 16
10 O -0.97 -23.06 16.01 -57.17 -0.92 -23.98 16
11 N -1.00 -21.09 3.23 -123.05 -0.40 -21.49 16
12 C 0.11 1.89 10.31 59.84 0.62 2.50 16
13 C 0.24 6.11 5.41 -5.19 -0.03 6.08 16
14 C -0.54 -13.97 9.38 -34.44 -0.32 -14.29 16
15 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16
16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
17 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16
18 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16
19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16
22 C 0.13 1.94 6.74 -3.06 -0.02 1.92 16
23 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16
24 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16
25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
26 H 0.34 3.20 8.39 -39.29 -0.33 2.87 16
27 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16
28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.08 1.34 7.78 -51.93 -0.40 0.93 16
30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16
31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16
33 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16
34 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16
35 H 0.05 1.39 6.92 -51.93 -0.36 1.03 16
36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16
37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16
LS Contribution 325.56 15.07 4.91 4.91
Total: -1.00 -31.31 325.56 -9.17 -40.48
By element:
Atomic # 1 Polarization: 6.95 SS G_CDS: -6.07 Total: 0.88 kcal
Atomic # 6 Polarization: -1.07 SS G_CDS: 0.39 Total: -0.68 kcal
Atomic # 7 Polarization: -71.02 SS G_CDS: -0.82 Total: -71.84 kcal
Atomic # 8 Polarization: -44.11 SS G_CDS: -1.88 Total: -45.99 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal
Atomic # 16 Polarization: 57.58 SS G_CDS: -0.68 Total: 56.91 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -31.31 -9.17 -40.48 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122769104.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.147 kcal
(2) G-P(sol) polarization free energy of solvation -31.308 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.455 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds