Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 H 1.08999 * 110.64443 * 36.68189 * 3 2 1 5 5 C 1.55156 * 110.71772 * 273.54547 * 3 2 1 6 6 C 1.54912 * 101.58220 * 206.13414 * 5 3 2 7 7 N 1.47428 * 104.83065 * 37.01080 * 6 5 3 8 8 S 1.65594 * 125.64957 * 155.90674 * 7 6 5 9 9 O 1.42103 * 106.40505 * 203.51442 * 8 7 6 10 10 O 1.42100 * 106.40513 * 336.43279 * 8 7 6 11 11 N 1.65599 * 107.21829 * 89.97759 * 8 7 6 12 12 C 1.46493 * 120.00349 * 89.99964 * 11 8 7 13 13 C 1.46507 * 119.99742 * 270.00050 * 11 8 7 14 14 C 1.50695 * 109.46991 * 94.99796 * 13 11 8 15 15 H 1.07995 * 120.00461 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99706 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00406 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47513 * 60.00270 * 18 16 14 20 20 H 1.48506 * 109.46949 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47083 * 300.00028 * 18 16 14 22 22 C 1.47028 * 108.69968 * 335.87124 * 7 6 5 23 23 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 24 24 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 25 25 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 27 27 H 1.08997 * 111.00675 * 324.20810 * 5 3 2 28 28 H 1.09004 * 111.00589 * 88.06019 * 5 3 2 29 29 H 1.09001 * 110.37022 * 155.84392 * 6 5 3 30 30 H 1.08998 * 110.36586 * 278.17369 * 6 5 3 31 31 H 1.09004 * 109.47333 * 90.00118 * 12 11 8 32 32 H 1.09002 * 109.47302 * 210.00089 * 12 11 8 33 33 H 1.09005 * 109.47004 * 329.99754 * 12 11 8 34 34 H 1.09002 * 109.46904 * 215.00115 * 13 11 8 35 35 H 1.09005 * 109.47086 * 334.99673 * 13 11 8 36 36 H 0.96990 * 120.00367 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.88053 * 241.63964 * 22 7 6 38 38 H 1.09005 * 109.87906 * 120.47952 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3695 2.0234 0.6093 5 6 2.1084 1.9160 -1.4485 6 6 3.2384 2.9652 -1.2991 7 7 4.1825 2.3684 -0.3368 8 16 5.7925 2.7345 -0.2108 9 8 6.4134 1.6103 0.3974 10 8 6.1868 3.2508 -1.4747 11 7 5.9282 3.9839 0.8677 12 6 6.1033 3.7038 2.2949 13 6 5.8732 5.3693 0.3944 14 6 4.4640 5.8878 0.5213 15 1 3.6871 5.2495 0.9154 16 6 4.1667 7.1776 0.1351 17 7 5.1128 7.9552 -0.3444 18 14 2.4200 7.8207 0.2930 19 1 1.9991 7.7663 1.7161 20 1 2.3642 9.2250 -0.1868 21 1 1.5078 6.9819 -0.5253 22 6 3.4575 1.3951 0.4931 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8306 -0.5261 -0.7814 27 1 2.3978 1.1261 -2.1414 28 1 1.1769 2.3871 -1.7625 29 1 3.7293 3.1331 -2.2577 30 1 2.8383 3.9005 -0.9077 31 1 7.1667 3.6319 2.5233 32 1 5.6595 4.5091 2.8803 33 1 5.6138 2.7619 2.5430 34 1 6.5426 5.9852 0.9950 35 1 6.1824 5.4090 -0.6501 36 1 4.9036 8.8624 -0.6163 37 1 3.4913 1.7014 1.5386 38 1 3.9031 0.4067 0.3797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122769104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = -67.630058 kcal Electronic energy + Delta-G solvation = -21139.647115 eV Core-core repulsion = 17950.999722 eV Total energy + Delta-G solvation = -3188.647393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.73096 -36.62836 -35.45554 -35.19195 -34.83126 -32.49473 -29.79343 -28.55990 -27.76617 -25.07183 -24.57458 -22.38965 -21.96904 -20.88699 -18.42034 -17.34210 -16.90170 -16.38174 -16.14098 -15.45325 -15.27440 -14.58536 -14.20028 -13.75120 -13.43605 -13.37799 -13.24235 -12.70757 -12.60673 -12.33840 -12.18012 -12.08438 -11.78941 -11.68773 -11.50653 -11.19425 -11.17208 -11.13485 -11.09117 -10.78515 -10.67980 -10.51579 -10.10516 -9.80072 -8.63857 -8.54471 -8.49617 -8.03226 -6.12613 -4.19365 1.25319 3.22604 3.28871 3.29381 3.49232 4.03139 4.17815 4.33798 4.65556 4.70730 4.98580 5.11076 5.21163 5.24859 5.33063 5.47834 5.57721 5.61420 5.72361 5.77753 5.84169 6.00422 6.07300 6.10221 6.24254 6.35420 6.47831 6.55616 6.76170 6.86960 7.20084 7.33716 7.43686 7.64274 7.84452 8.14263 8.85262 9.46213 10.95439 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.007991 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.065207 B = 3503.285858 C = 4706.995540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.686 5.686 3 C 0.078 3.922 4 H 0.095 0.905 5 C -0.160 4.160 6 C 0.124 3.876 7 N -1.017 6.017 8 S 2.802 3.198 9 O -0.996 6.996 10 O -0.975 6.975 11 N -0.997 5.997 12 C 0.107 3.893 13 C 0.244 3.756 14 C -0.539 4.539 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.135 3.865 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.344 0.656 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.064 0.936 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 -12.079 0.969 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.316 5.316 3 C -0.033 4.033 4 H 0.113 0.887 5 C -0.201 4.201 6 C -0.002 4.002 7 N -0.856 5.856 8 S 2.812 3.188 9 O -0.980 6.980 10 O -0.959 6.959 11 N -0.839 5.839 12 C -0.040 4.040 13 C 0.122 3.878 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.008 3.992 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.645 -12.361 1.148 14.080 hybrid contribution -1.556 1.089 -0.567 1.982 sum -8.201 -11.272 0.581 13.952 Atomic orbital electron populations 1.22189 0.87617 1.01701 1.00586 1.60375 1.07854 1.13330 1.50064 1.22682 0.95743 0.89252 0.95645 0.88726 1.23486 0.99331 0.99723 0.97572 1.21906 0.89262 0.96166 0.92882 1.59099 1.27602 1.52660 1.46215 1.01263 0.71866 0.72402 0.73316 1.93534 1.73999 1.51839 1.78636 1.93566 1.80528 1.80409 1.41426 1.57701 1.86854 1.21846 1.17452 1.21217 1.00204 1.00594 0.81978 1.19217 0.97448 0.74819 0.96350 1.21512 0.94819 0.98120 1.43382 0.91979 1.24962 0.97271 0.96729 0.94945 1.69920 1.32517 1.08180 1.42142 0.86638 0.84715 0.78047 0.78452 1.20250 1.21199 1.20125 1.21484 0.91140 0.92463 0.94109 0.91625 0.95838 0.91540 0.83810 0.90916 0.90389 0.90218 0.90109 0.93736 0.90860 0.92939 0.94441 0.93135 0.92514 0.91735 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 60.07 0.63 0.88 16 2 N -0.69 -7.08 6.64 -112.06 -0.74 -7.82 16 3 C 0.08 0.94 3.24 -65.88 -0.21 0.73 16 4 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 5 C -0.16 -1.94 6.63 -24.58 -0.16 -2.10 16 6 C 0.12 2.00 7.11 -2.53 -0.02 1.98 16 7 N -1.02 -17.57 3.76 -111.42 -0.42 -17.99 16 8 S 2.80 57.58 6.31 -107.50 -0.68 56.91 16 9 O -1.00 -21.05 16.79 -57.17 -0.96 -22.01 16 10 O -0.97 -23.06 16.01 -57.17 -0.92 -23.98 16 11 N -1.00 -21.09 3.23 -123.05 -0.40 -21.49 16 12 C 0.11 1.89 10.31 59.84 0.62 2.50 16 13 C 0.24 6.11 5.41 -5.19 -0.03 6.08 16 14 C -0.54 -13.97 9.38 -34.44 -0.32 -14.29 16 15 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 18 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 C 0.13 1.94 6.74 -3.06 -0.02 1.92 16 23 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 24 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.34 3.20 8.39 -39.29 -0.33 2.87 16 27 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.34 7.78 -51.93 -0.40 0.93 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 34 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.05 1.39 6.92 -51.93 -0.36 1.03 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -31.31 325.56 -9.17 -40.48 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.07 Total: 0.88 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.39 Total: -0.68 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -0.82 Total: -71.84 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -1.88 Total: -45.99 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 57.58 SS G_CDS: -0.68 Total: 56.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.31 -9.17 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122769104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.147 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds