Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 H 1.08999 * 110.64443 * 36.68189 * 3 2 1 5 5 C 1.55156 * 110.71772 * 273.54547 * 3 2 1 6 6 C 1.54912 * 101.58220 * 206.13414 * 5 3 2 7 7 N 1.47428 * 104.83065 * 37.01080 * 6 5 3 8 8 S 1.65594 * 125.64957 * 155.90674 * 7 6 5 9 9 O 1.42103 * 106.40505 * 203.51442 * 8 7 6 10 10 O 1.42100 * 106.40513 * 336.43279 * 8 7 6 11 11 N 1.65599 * 107.21829 * 89.97759 * 8 7 6 12 12 C 1.46493 * 120.00349 * 89.99964 * 11 8 7 13 13 C 1.46507 * 119.99742 * 270.00050 * 11 8 7 14 14 C 1.50695 * 109.46991 * 94.99796 * 13 11 8 15 15 H 1.07995 * 120.00461 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99706 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00406 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47513 * 60.00270 * 18 16 14 20 20 H 1.48506 * 109.46949 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47083 * 300.00028 * 18 16 14 22 22 C 1.47028 * 108.69968 * 335.87124 * 7 6 5 23 23 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 24 24 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 25 25 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 27 27 H 1.08997 * 111.00675 * 324.20810 * 5 3 2 28 28 H 1.09004 * 111.00589 * 88.06019 * 5 3 2 29 29 H 1.09001 * 110.37022 * 155.84392 * 6 5 3 30 30 H 1.08998 * 110.36586 * 278.17369 * 6 5 3 31 31 H 1.09004 * 109.47333 * 90.00118 * 12 11 8 32 32 H 1.09002 * 109.47302 * 210.00089 * 12 11 8 33 33 H 1.09005 * 109.47004 * 329.99754 * 12 11 8 34 34 H 1.09002 * 109.46904 * 215.00115 * 13 11 8 35 35 H 1.09005 * 109.47086 * 334.99673 * 13 11 8 36 36 H 0.96990 * 120.00367 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.88053 * 241.63964 * 22 7 6 38 38 H 1.09005 * 109.87906 * 120.47952 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3695 2.0234 0.6093 5 6 2.1084 1.9160 -1.4485 6 6 3.2384 2.9652 -1.2991 7 7 4.1825 2.3684 -0.3368 8 16 5.7925 2.7345 -0.2108 9 8 6.4134 1.6103 0.3974 10 8 6.1868 3.2508 -1.4747 11 7 5.9282 3.9839 0.8677 12 6 6.1033 3.7038 2.2949 13 6 5.8732 5.3693 0.3944 14 6 4.4640 5.8878 0.5213 15 1 3.6871 5.2495 0.9154 16 6 4.1667 7.1776 0.1351 17 7 5.1128 7.9552 -0.3444 18 14 2.4200 7.8207 0.2930 19 1 1.9991 7.7663 1.7161 20 1 2.3642 9.2250 -0.1868 21 1 1.5078 6.9819 -0.5253 22 6 3.4575 1.3951 0.4931 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8306 -0.5261 -0.7814 27 1 2.3978 1.1261 -2.1414 28 1 1.1769 2.3871 -1.7625 29 1 3.7293 3.1331 -2.2577 30 1 2.8383 3.9005 -0.9077 31 1 7.1667 3.6319 2.5233 32 1 5.6595 4.5091 2.8803 33 1 5.6138 2.7619 2.5430 34 1 6.5426 5.9852 0.9950 35 1 6.1824 5.4090 -0.6501 36 1 4.9036 8.8624 -0.6163 37 1 3.4913 1.7014 1.5386 38 1 3.9031 0.4067 0.3797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122769104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = -92.333636 kcal Electronic energy + Delta-G solvation = -21140.718343 eV Core-core repulsion = 17950.999722 eV Total energy + Delta-G solvation = -3189.718621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82135 -38.35798 -37.22129 -36.93598 -35.80024 -34.48617 -30.92069 -29.76514 -29.51737 -26.79091 -25.37910 -24.22454 -23.28797 -21.87453 -19.95862 -18.92588 -18.65300 -18.20530 -17.42355 -16.95679 -16.37350 -16.30202 -15.31480 -15.22069 -14.90509 -14.75125 -14.28009 -14.03643 -13.98290 -13.90138 -13.76695 -13.43244 -13.25694 -13.05100 -13.00495 -12.92440 -12.60842 -12.57493 -12.46047 -12.36378 -12.13622 -11.90856 -11.77826 -11.69759 -10.57909 -9.99021 -9.77137 -9.34936 -8.16742 -6.31208 -0.37204 1.43636 1.45365 1.53193 1.95054 2.42531 2.55295 3.06569 3.14978 3.45315 3.59718 3.77358 4.05640 4.14298 4.34309 4.49050 4.59662 4.63778 4.68216 4.70742 4.77715 4.85116 4.90557 4.98301 5.03834 5.10303 5.12766 5.21694 5.24733 5.39183 5.51725 5.74250 5.92734 6.04498 6.09541 6.47185 6.80427 7.38927 8.91473 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.007991 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.065207 B = 3503.285858 C = 4706.995540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.690 5.690 3 C 0.089 3.911 4 H 0.098 0.902 5 C -0.146 4.146 6 C 0.116 3.884 7 N -1.015 6.015 8 S 2.814 3.186 9 O -1.002 7.002 10 O -1.013 7.013 11 N -1.004 6.004 12 C 0.099 3.901 13 C 0.258 3.742 14 C -0.540 4.540 15 H 0.072 0.928 16 C 0.010 3.990 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.125 3.875 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.350 0.650 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.020 0.980 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.069 0.931 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -13.419 1.651 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.321 5.321 3 C -0.023 4.023 4 H 0.116 0.884 5 C -0.187 4.187 6 C -0.010 4.010 7 N -0.856 5.856 8 S 2.824 3.176 9 O -0.986 6.986 10 O -0.997 6.997 11 N -0.845 5.845 12 C -0.047 4.047 13 C 0.134 3.866 14 C -0.579 4.579 15 H 0.090 0.910 16 C -0.189 4.189 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.186 1.186 22 C 0.000 4.000 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.169 0.831 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.166 -13.739 1.852 16.619 hybrid contribution -0.740 1.424 -0.760 1.775 sum -9.906 -12.315 1.092 15.842 Atomic orbital electron populations 1.22246 0.86215 1.02771 1.00839 1.60344 1.09119 1.12050 1.50569 1.22540 0.94096 0.90439 0.95247 0.88366 1.23459 0.98300 0.98745 0.98189 1.22014 0.90200 0.97051 0.91749 1.58820 1.26805 1.53071 1.46952 1.00668 0.72554 0.71961 0.72405 1.93515 1.74860 1.51662 1.78571 1.93513 1.81806 1.81021 1.43359 1.57630 1.87506 1.20237 1.19134 1.21451 1.01472 1.01783 0.79956 1.18783 0.96969 0.76646 0.94210 1.21763 0.95169 0.98290 1.42702 0.90976 1.25850 1.01464 0.97062 0.94547 1.70065 1.34872 1.08553 1.43478 0.85573 0.79726 0.77230 0.78982 1.19191 1.21469 1.18583 1.21760 0.92586 0.91681 0.93998 0.91740 0.95171 0.90136 0.83070 0.89584 0.88430 0.91638 0.91758 0.92532 0.90675 0.90597 0.96228 0.96483 0.92553 0.91300 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 127.69 1.35 1.73 16 2 N -0.69 -12.03 6.64 -508.44 -3.37 -15.41 16 3 C 0.09 1.89 3.24 46.10 0.15 2.04 16 4 H 0.10 2.06 7.89 -2.39 -0.02 2.04 16 5 C -0.15 -3.15 6.63 31.99 0.21 -2.94 16 6 C 0.12 3.65 7.11 86.86 0.62 4.27 16 7 N -1.02 -34.27 3.76 -506.41 -1.90 -36.17 16 8 S 2.81 116.23 6.31 -56.49 -0.36 115.87 16 9 O -1.00 -41.72 16.79 -128.00 -2.15 -43.87 16 10 O -1.01 -49.40 16.01 -128.00 -2.05 -51.45 16 11 N -1.00 -42.77 3.23 -543.21 -1.75 -44.52 16 12 C 0.10 3.40 10.31 127.77 1.32 4.72 16 13 C 0.26 13.28 5.41 85.63 0.46 13.74 16 14 C -0.54 -28.12 9.38 25.60 0.24 -27.88 16 15 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 16 C 0.01 0.54 5.46 84.66 0.46 1.01 16 17 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16 18 Si 0.96 41.24 29.54 68.60 2.03 43.26 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 C 0.13 3.37 6.74 86.73 0.58 3.96 16 23 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 24 H 0.03 0.38 8.13 -2.39 -0.02 0.36 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.35 5.40 8.39 -89.69 -0.75 4.64 16 27 H 0.09 1.65 7.81 -2.39 -0.02 1.63 16 28 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.07 2.22 7.78 -2.39 -0.02 2.21 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 33 H 0.08 2.24 7.79 -2.38 -0.02 2.22 16 34 H 0.02 1.06 8.11 -2.39 -0.02 1.04 16 35 H 0.02 0.99 6.92 -2.38 -0.02 0.97 16 36 H 0.27 14.59 8.31 -92.72 -0.77 13.82 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.98 8.03 -2.38 -0.02 1.96 16 Total: -1.00 -67.40 325.56 -3.59 -70.99 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.29 Total: 14.31 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.39 Total: 0.64 kcal Atomic # 7 Polarization: -143.01 SS G_CDS: -6.74 Total: -149.75 kcal Atomic # 8 Polarization: -91.12 SS G_CDS: -4.20 Total: -95.32 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 116.23 SS G_CDS: -0.36 Total: 115.87 kcal Total: -67.40 -3.59 -70.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122769104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.348 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds