Wall clock time and date at job start Mon Mar 30 2020 02:02:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46905 * 1
3 3 C 1.46901 * 110.99870 * 2 1
4 4 H 1.08999 * 110.64443 * 36.68189 * 3 2 1
5 5 C 1.55156 * 110.71772 * 273.54547 * 3 2 1
6 6 C 1.54912 * 101.58220 * 206.13414 * 5 3 2
7 7 N 1.47428 * 104.83065 * 37.01080 * 6 5 3
8 8 S 1.65594 * 125.64957 * 155.90674 * 7 6 5
9 9 O 1.42103 * 106.40505 * 203.51442 * 8 7 6
10 10 O 1.42100 * 106.40513 * 336.43279 * 8 7 6
11 11 N 1.65599 * 107.21829 * 89.97759 * 8 7 6
12 12 C 1.46493 * 120.00349 * 89.99964 * 11 8 7
13 13 C 1.46507 * 119.99742 * 270.00050 * 11 8 7
14 14 C 1.50695 * 109.46991 * 94.99796 * 13 11 8
15 15 H 1.07995 * 120.00461 * 0.02562 * 14 13 11
16 16 C 1.37882 * 119.99706 * 179.97438 * 14 13 11
17 17 N 1.31517 * 120.00406 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 119.99800 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.47513 * 60.00270 * 18 16 14
20 20 H 1.48506 * 109.46949 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.47083 * 300.00028 * 18 16 14
22 22 C 1.47028 * 108.69968 * 335.87124 * 7 6 5
23 23 H 1.09001 * 109.46798 * 300.00327 * 1 2 3
24 24 H 1.08998 * 109.46961 * 60.00043 * 1 2 3
25 25 H 1.08996 * 109.46906 * 180.02562 * 1 2 3
26 26 H 1.00901 * 110.99869 * 236.04711 * 2 1 3
27 27 H 1.08997 * 111.00675 * 324.20810 * 5 3 2
28 28 H 1.09004 * 111.00589 * 88.06019 * 5 3 2
29 29 H 1.09001 * 110.37022 * 155.84392 * 6 5 3
30 30 H 1.08998 * 110.36586 * 278.17369 * 6 5 3
31 31 H 1.09004 * 109.47333 * 90.00118 * 12 11 8
32 32 H 1.09002 * 109.47302 * 210.00089 * 12 11 8
33 33 H 1.09005 * 109.47004 * 329.99754 * 12 11 8
34 34 H 1.09002 * 109.46904 * 215.00115 * 13 11 8
35 35 H 1.09005 * 109.47086 * 334.99673 * 13 11 8
36 36 H 0.96990 * 120.00367 * 179.97438 * 17 16 14
37 37 H 1.08996 * 109.88053 * 241.63964 * 22 7 6
38 38 H 1.09005 * 109.87906 * 120.47952 * 22 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 1 1.3695 2.0234 0.6093
5 6 2.1084 1.9160 -1.4485
6 6 3.2384 2.9652 -1.2991
7 7 4.1825 2.3684 -0.3368
8 16 5.7925 2.7345 -0.2108
9 8 6.4134 1.6103 0.3974
10 8 6.1868 3.2508 -1.4747
11 7 5.9282 3.9839 0.8677
12 6 6.1033 3.7038 2.2949
13 6 5.8732 5.3693 0.3944
14 6 4.4640 5.8878 0.5213
15 1 3.6871 5.2495 0.9154
16 6 4.1667 7.1776 0.1351
17 7 5.1128 7.9552 -0.3444
18 14 2.4200 7.8207 0.2930
19 1 1.9991 7.7663 1.7161
20 1 2.3642 9.2250 -0.1868
21 1 1.5078 6.9819 -0.5253
22 6 3.4575 1.3951 0.4931
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0276 0.0005
26 1 1.8306 -0.5261 -0.7814
27 1 2.3978 1.1261 -2.1414
28 1 1.1769 2.3871 -1.7625
29 1 3.7293 3.1331 -2.2577
30 1 2.8383 3.9005 -0.9077
31 1 7.1667 3.6319 2.5233
32 1 5.6595 4.5091 2.8803
33 1 5.6138 2.7619 2.5430
34 1 6.5426 5.9852 0.9950
35 1 6.1824 5.4090 -0.6501
36 1 4.9036 8.8624 -0.6163
37 1 3.4913 1.7014 1.5386
38 1 3.9031 0.4067 0.3797
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000122769104.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:54
Heat of formation + Delta-G solvation = -92.333636 kcal
Electronic energy + Delta-G solvation = -21140.718343 eV
Core-core repulsion = 17950.999722 eV
Total energy + Delta-G solvation = -3189.718621 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 277.125 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.82135 -38.35798 -37.22129 -36.93598 -35.80024 -34.48617 -30.92069 -29.76514
-29.51737 -26.79091 -25.37910 -24.22454 -23.28797 -21.87453 -19.95862 -18.92588
-18.65300 -18.20530 -17.42355 -16.95679 -16.37350 -16.30202 -15.31480 -15.22069
-14.90509 -14.75125 -14.28009 -14.03643 -13.98290 -13.90138 -13.76695 -13.43244
-13.25694 -13.05100 -13.00495 -12.92440 -12.60842 -12.57493 -12.46047 -12.36378
-12.13622 -11.90856 -11.77826 -11.69759 -10.57909 -9.99021 -9.77137 -9.34936
-8.16742 -6.31208 -0.37204 1.43636 1.45365 1.53193 1.95054 2.42531
2.55295 3.06569 3.14978 3.45315 3.59718 3.77358 4.05640 4.14298
4.34309 4.49050 4.59662 4.63778 4.68216 4.70742 4.77715 4.85116
4.90557 4.98301 5.03834 5.10303 5.12766 5.21694 5.24733 5.39183
5.51725 5.74250 5.92734 6.04498 6.09541 6.47185 6.80427 7.38927
8.91473
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.014858 B = 0.007991 C = 0.005947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.065207 B = 3503.285858 C = 4706.995540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.690 5.690
3 C 0.089 3.911
4 H 0.098 0.902
5 C -0.146 4.146
6 C 0.116 3.884
7 N -1.015 6.015
8 S 2.814 3.186
9 O -1.002 7.002
10 O -1.013 7.013
11 N -1.004 6.004
12 C 0.099 3.901
13 C 0.258 3.742
14 C -0.540 4.540
15 H 0.072 0.928
16 C 0.010 3.990
17 N -0.930 5.930
18 Si 0.960 3.040
19 H -0.267 1.267
20 H -0.289 1.289
21 H -0.261 1.261
22 C 0.125 3.875
23 H 0.064 0.936
24 H 0.030 0.970
25 H 0.080 0.920
26 H 0.350 0.650
27 H 0.086 0.914
28 H 0.097 0.903
29 H 0.065 0.935
30 H 0.064 0.936
31 H 0.056 0.944
32 H 0.074 0.926
33 H 0.075 0.925
34 H 0.020 0.980
35 H 0.017 0.983
36 H 0.266 0.734
37 H 0.069 0.931
38 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.079 -13.419 1.651 16.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 N -0.321 5.321
3 C -0.023 4.023
4 H 0.116 0.884
5 C -0.187 4.187
6 C -0.010 4.010
7 N -0.856 5.856
8 S 2.824 3.176
9 O -0.986 6.986
10 O -0.997 6.997
11 N -0.845 5.845
12 C -0.047 4.047
13 C 0.134 3.866
14 C -0.579 4.579
15 H 0.090 0.910
16 C -0.189 4.189
17 N -0.570 5.570
18 Si 0.785 3.215
19 H -0.192 1.192
20 H -0.215 1.215
21 H -0.186 1.186
22 C 0.000 4.000
23 H 0.083 0.917
24 H 0.048 0.952
25 H 0.099 0.901
26 H 0.169 0.831
27 H 0.104 0.896
28 H 0.116 0.884
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.075 0.925
32 H 0.093 0.907
33 H 0.094 0.906
34 H 0.038 0.962
35 H 0.035 0.965
36 H 0.074 0.926
37 H 0.087 0.913
38 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -9.166 -13.739 1.852 16.619
hybrid contribution -0.740 1.424 -0.760 1.775
sum -9.906 -12.315 1.092 15.842
Atomic orbital electron populations
1.22246 0.86215 1.02771 1.00839 1.60344 1.09119 1.12050 1.50569
1.22540 0.94096 0.90439 0.95247 0.88366 1.23459 0.98300 0.98745
0.98189 1.22014 0.90200 0.97051 0.91749 1.58820 1.26805 1.53071
1.46952 1.00668 0.72554 0.71961 0.72405 1.93515 1.74860 1.51662
1.78571 1.93513 1.81806 1.81021 1.43359 1.57630 1.87506 1.20237
1.19134 1.21451 1.01472 1.01783 0.79956 1.18783 0.96969 0.76646
0.94210 1.21763 0.95169 0.98290 1.42702 0.90976 1.25850 1.01464
0.97062 0.94547 1.70065 1.34872 1.08553 1.43478 0.85573 0.79726
0.77230 0.78982 1.19191 1.21469 1.18583 1.21760 0.92586 0.91681
0.93998 0.91740 0.95171 0.90136 0.83070 0.89584 0.88430 0.91638
0.91758 0.92532 0.90675 0.90597 0.96228 0.96483 0.92553 0.91300
0.90662
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.56 127.69 1.35 1.73 16
2 N -0.69 -12.03 6.64 -508.44 -3.37 -15.41 16
3 C 0.09 1.89 3.24 46.10 0.15 2.04 16
4 H 0.10 2.06 7.89 -2.39 -0.02 2.04 16
5 C -0.15 -3.15 6.63 31.99 0.21 -2.94 16
6 C 0.12 3.65 7.11 86.86 0.62 4.27 16
7 N -1.02 -34.27 3.76 -506.41 -1.90 -36.17 16
8 S 2.81 116.23 6.31 -56.49 -0.36 115.87 16
9 O -1.00 -41.72 16.79 -128.00 -2.15 -43.87 16
10 O -1.01 -49.40 16.01 -128.00 -2.05 -51.45 16
11 N -1.00 -42.77 3.23 -543.21 -1.75 -44.52 16
12 C 0.10 3.40 10.31 127.77 1.32 4.72 16
13 C 0.26 13.28 5.41 85.63 0.46 13.74 16
14 C -0.54 -28.12 9.38 25.60 0.24 -27.88 16
15 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16
16 C 0.01 0.54 5.46 84.66 0.46 1.01 16
17 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16
18 Si 0.96 41.24 29.54 68.60 2.03 43.26 16
19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
20 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16
21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16
22 C 0.13 3.37 6.74 86.73 0.58 3.96 16
23 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16
24 H 0.03 0.38 8.13 -2.39 -0.02 0.36 16
25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
26 H 0.35 5.40 8.39 -89.69 -0.75 4.64 16
27 H 0.09 1.65 7.81 -2.39 -0.02 1.63 16
28 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16
29 H 0.07 2.22 7.78 -2.39 -0.02 2.21 16
30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16
33 H 0.08 2.24 7.79 -2.38 -0.02 2.22 16
34 H 0.02 1.06 8.11 -2.39 -0.02 1.04 16
35 H 0.02 0.99 6.92 -2.38 -0.02 0.97 16
36 H 0.27 14.59 8.31 -92.72 -0.77 13.82 16
37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
38 H 0.08 1.98 8.03 -2.38 -0.02 1.96 16
Total: -1.00 -67.40 325.56 -3.59 -70.99
By element:
Atomic # 1 Polarization: 14.02 SS G_CDS: 0.29 Total: 14.31 kcal
Atomic # 6 Polarization: -4.76 SS G_CDS: 5.39 Total: 0.64 kcal
Atomic # 7 Polarization: -143.01 SS G_CDS: -6.74 Total: -149.75 kcal
Atomic # 8 Polarization: -91.12 SS G_CDS: -4.20 Total: -95.32 kcal
Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal
Atomic # 16 Polarization: 116.23 SS G_CDS: -0.36 Total: 115.87 kcal
Total: -67.40 -3.59 -70.99 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122769104.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.348 kcal
(2) G-P(sol) polarization free energy of solvation -67.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds