Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99820 * 2 1 4 4 H 1.08996 * 110.88792 * 328.87353 * 3 2 1 5 5 C 1.55162 * 111.00714 * 92.80436 * 3 2 1 6 6 C 1.54326 * 103.02332 * 153.38038 * 5 3 2 7 7 N 1.47029 * 107.26441 * 338.13795 * 6 5 3 8 8 S 1.65599 * 125.64592 * 178.84711 * 7 6 5 9 9 O 1.42102 * 106.40395 * 156.15497 * 8 7 6 10 10 O 1.42097 * 106.40322 * 23.23577 * 8 7 6 11 11 N 1.65600 * 107.22069 * 269.69463 * 8 7 6 12 12 C 1.46499 * 120.00084 * 90.00328 * 11 8 7 13 13 C 1.46499 * 119.99691 * 270.00182 * 11 8 7 14 14 C 1.50710 * 109.47211 * 264.99811 * 13 11 8 15 15 H 1.08006 * 119.99595 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00111 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99826 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00161 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46753 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47459 * 119.99726 * 18 16 14 21 21 H 1.48501 * 109.47022 * 240.00061 * 18 16 14 22 22 C 1.47420 * 108.70551 * 358.58709 * 7 6 5 23 23 H 1.09000 * 109.47441 * 300.00229 * 1 2 3 24 24 H 1.09004 * 109.47058 * 60.00566 * 1 2 3 25 25 H 1.09004 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.00899 * 111.00700 * 236.04536 * 2 1 3 27 27 H 1.08998 * 110.71671 * 271.94087 * 5 3 2 28 28 H 1.09002 * 110.72005 * 35.20919 * 5 3 2 29 29 H 1.08998 * 109.99611 * 218.66485 * 6 5 3 30 30 H 1.08998 * 109.78062 * 97.49455 * 6 5 3 31 31 H 1.09002 * 109.47391 * 89.99859 * 12 11 8 32 32 H 1.09001 * 109.46813 * 329.99915 * 12 11 8 33 33 H 1.09004 * 109.47041 * 210.00042 * 12 11 8 34 34 H 1.08992 * 109.47737 * 24.99864 * 13 11 8 35 35 H 1.09002 * 109.47072 * 145.00060 * 13 11 8 36 36 H 0.97007 * 119.99675 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.36956 * 143.19297 * 22 7 6 38 38 H 1.09002 * 110.36927 * 265.40867 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3208 2.0466 -0.5264 5 6 2.2609 1.8654 1.4468 6 6 3.3762 2.9149 1.2568 7 7 4.0419 2.6180 -0.0201 8 16 5.2903 3.4819 -0.6814 9 8 5.9754 2.5935 -1.5537 10 8 5.9254 4.1575 0.3953 11 7 4.6212 4.6549 -1.6399 12 6 4.2999 5.9677 -1.0746 13 6 4.3506 4.3797 -3.0531 14 6 5.5076 4.8625 -3.8895 15 1 6.3596 5.3273 -3.4155 16 6 5.4786 4.7107 -5.2595 17 7 4.4414 4.1442 -5.8365 18 14 6.9131 5.3084 -6.2961 19 1 7.9477 5.9039 -5.4128 20 1 7.4966 4.1638 -7.0407 21 1 6.4351 6.3332 -7.2587 22 6 3.4181 1.4201 -0.6112 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8307 -0.5261 -0.7813 27 1 1.3657 2.3225 1.8685 28 1 2.6100 1.0465 2.0758 29 1 4.0946 2.8474 2.0737 30 1 2.9412 3.9138 1.2245 31 1 5.1600 6.6290 -1.1797 32 1 4.0529 5.8579 -0.0186 33 1 3.4477 6.3929 -1.6048 34 1 4.2215 3.3070 -3.1963 35 1 3.4414 4.8988 -3.3567 36 1 4.4209 4.0377 -6.8005 37 1 3.3621 1.5173 -1.6954 38 1 3.9801 0.5265 -0.3397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122769309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = -65.277505 kcal Electronic energy + Delta-G solvation = -20849.339942 eV Core-core repulsion = 17660.794563 eV Total energy + Delta-G solvation = -3188.545379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.76461 -36.62469 -35.49476 -35.15577 -34.95056 -32.45017 -30.00905 -28.72040 -27.78412 -25.08051 -24.60960 -22.53460 -22.12835 -20.66776 -18.55361 -17.37581 -16.94346 -16.34627 -16.09612 -15.82112 -15.23282 -14.53114 -14.25439 -13.93294 -13.62856 -13.30614 -13.18535 -13.10216 -12.79464 -12.40366 -12.23688 -12.13057 -11.65918 -11.52982 -11.33680 -11.20938 -11.18405 -11.16881 -11.10620 -10.78581 -10.70551 -10.53744 -10.03000 -9.76848 -8.84923 -8.67196 -8.46010 -8.07059 -6.08543 -4.12176 1.13622 3.30220 3.37782 3.42575 3.46172 4.02060 4.12744 4.41586 4.45182 4.65135 5.01725 5.06609 5.19553 5.25378 5.25768 5.32889 5.47098 5.49032 5.63708 5.71032 5.76574 5.84573 5.92321 6.04118 6.08267 6.19380 6.35891 6.44111 6.60542 6.84683 7.15710 7.17725 7.36793 7.58194 7.89380 8.18352 8.90530 9.53275 11.00185 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.005788 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.963634 B = 4836.112453 C = 5548.208549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.685 5.685 3 C 0.070 3.930 4 H 0.065 0.935 5 C -0.115 4.115 6 C 0.122 3.878 7 N -1.022 6.022 8 S 2.794 3.206 9 O -0.958 6.958 10 O -0.991 6.991 11 N -0.997 5.997 12 C 0.109 3.891 13 C 0.258 3.742 14 C -0.527 4.527 15 H 0.061 0.939 16 C 0.062 3.938 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.122 3.878 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.346 0.654 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.943 -4.637 12.571 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.316 5.316 3 C -0.041 4.041 4 H 0.083 0.917 5 C -0.155 4.155 6 C -0.004 4.004 7 N -0.860 5.860 8 S 2.803 3.197 9 O -0.942 6.942 10 O -0.976 6.976 11 N -0.840 5.840 12 C -0.037 4.037 13 C 0.136 3.864 14 C -0.566 4.566 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.537 5.537 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.005 4.005 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.165 0.835 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.968 -4.851 13.180 16.147 hybrid contribution 0.060 0.709 -1.736 1.877 sum -7.908 -4.141 11.444 14.514 Atomic orbital electron populations 1.22233 0.87563 1.01830 1.00542 1.60403 1.07956 1.13198 1.50067 1.22805 0.95177 0.89656 0.96454 0.91686 1.22634 0.97731 0.98329 0.96760 1.21649 0.94596 0.98506 0.85685 1.59366 1.54693 1.40659 1.31314 1.01666 0.72866 0.72867 0.72293 1.93626 1.69812 1.65094 1.65629 1.93529 1.72834 1.74957 1.56233 1.57749 1.80606 1.23511 1.22110 1.21205 1.01047 0.85174 0.96321 1.19067 0.97151 0.96895 0.73328 1.21532 1.04100 1.39363 0.91645 0.92107 1.24930 0.96242 0.95058 0.97806 1.69928 1.29478 1.43710 1.10541 0.86444 0.82454 0.78485 0.80102 1.19609 1.20762 1.20957 1.22025 0.92108 0.88254 0.98073 0.91750 0.95679 0.91408 0.83533 0.90785 0.89795 0.91259 0.92050 0.93074 0.93087 0.91543 0.94665 0.94810 0.92754 0.90318 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 60.06 0.63 0.87 16 2 N -0.68 -6.86 6.77 -111.71 -0.76 -7.61 16 3 C 0.07 0.80 3.39 -65.56 -0.22 0.58 16 4 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 5 C -0.12 -1.20 6.65 -24.89 -0.17 -1.36 16 6 C 0.12 1.54 6.99 -3.06 -0.02 1.51 16 7 N -1.02 -16.26 3.75 -111.41 -0.42 -16.67 16 8 S 2.79 57.30 6.26 -107.50 -0.67 56.63 16 9 O -0.96 -23.34 16.69 -57.17 -0.95 -24.29 16 10 O -0.99 -21.25 16.79 -57.17 -0.96 -22.21 16 11 N -1.00 -21.06 3.23 -123.05 -0.40 -21.45 16 12 C 0.11 1.91 10.33 59.85 0.62 2.53 16 13 C 0.26 6.47 5.12 -5.19 -0.03 6.44 16 14 C -0.53 -14.92 9.38 -34.44 -0.32 -15.25 16 15 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 18 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.12 1.73 6.38 -2.53 -0.02 1.72 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.35 3.24 8.52 -39.29 -0.33 2.90 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 33 H 0.07 1.07 7.94 -51.93 -0.41 0.65 16 34 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 35 H 0.03 0.86 7.96 -51.93 -0.41 0.44 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -33.53 327.04 -9.27 -42.80 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.14 Total: -2.36 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.38 Total: -1.31 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.83 Total: -71.11 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.91 Total: -46.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 57.30 SS G_CDS: -0.67 Total: 56.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.53 -9.27 -42.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122769309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.475 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds