Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99820 * 2 1 4 4 H 1.08996 * 110.88792 * 328.87353 * 3 2 1 5 5 C 1.55162 * 111.00714 * 92.80436 * 3 2 1 6 6 C 1.54326 * 103.02332 * 153.38038 * 5 3 2 7 7 N 1.47029 * 107.26441 * 338.13795 * 6 5 3 8 8 S 1.65599 * 125.64592 * 178.84711 * 7 6 5 9 9 O 1.42102 * 106.40395 * 156.15497 * 8 7 6 10 10 O 1.42097 * 106.40322 * 23.23577 * 8 7 6 11 11 N 1.65600 * 107.22069 * 269.69463 * 8 7 6 12 12 C 1.46499 * 120.00084 * 90.00328 * 11 8 7 13 13 C 1.46499 * 119.99691 * 270.00182 * 11 8 7 14 14 C 1.50710 * 109.47211 * 264.99811 * 13 11 8 15 15 H 1.08006 * 119.99595 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00111 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99826 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00161 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46753 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47459 * 119.99726 * 18 16 14 21 21 H 1.48501 * 109.47022 * 240.00061 * 18 16 14 22 22 C 1.47420 * 108.70551 * 358.58709 * 7 6 5 23 23 H 1.09000 * 109.47441 * 300.00229 * 1 2 3 24 24 H 1.09004 * 109.47058 * 60.00566 * 1 2 3 25 25 H 1.09004 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.00899 * 111.00700 * 236.04536 * 2 1 3 27 27 H 1.08998 * 110.71671 * 271.94087 * 5 3 2 28 28 H 1.09002 * 110.72005 * 35.20919 * 5 3 2 29 29 H 1.08998 * 109.99611 * 218.66485 * 6 5 3 30 30 H 1.08998 * 109.78062 * 97.49455 * 6 5 3 31 31 H 1.09002 * 109.47391 * 89.99859 * 12 11 8 32 32 H 1.09001 * 109.46813 * 329.99915 * 12 11 8 33 33 H 1.09004 * 109.47041 * 210.00042 * 12 11 8 34 34 H 1.08992 * 109.47737 * 24.99864 * 13 11 8 35 35 H 1.09002 * 109.47072 * 145.00060 * 13 11 8 36 36 H 0.97007 * 119.99675 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.36956 * 143.19297 * 22 7 6 38 38 H 1.09002 * 110.36927 * 265.40867 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3208 2.0466 -0.5264 5 6 2.2609 1.8654 1.4468 6 6 3.3762 2.9149 1.2568 7 7 4.0419 2.6180 -0.0201 8 16 5.2903 3.4819 -0.6814 9 8 5.9754 2.5935 -1.5537 10 8 5.9254 4.1575 0.3953 11 7 4.6212 4.6549 -1.6399 12 6 4.2999 5.9677 -1.0746 13 6 4.3506 4.3797 -3.0531 14 6 5.5076 4.8625 -3.8895 15 1 6.3596 5.3273 -3.4155 16 6 5.4786 4.7107 -5.2595 17 7 4.4414 4.1442 -5.8365 18 14 6.9131 5.3084 -6.2961 19 1 7.9477 5.9039 -5.4128 20 1 7.4966 4.1638 -7.0407 21 1 6.4351 6.3332 -7.2587 22 6 3.4181 1.4201 -0.6112 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8307 -0.5261 -0.7813 27 1 1.3657 2.3225 1.8685 28 1 2.6100 1.0465 2.0758 29 1 4.0946 2.8474 2.0737 30 1 2.9412 3.9138 1.2245 31 1 5.1600 6.6290 -1.1797 32 1 4.0529 5.8579 -0.0186 33 1 3.4477 6.3929 -1.6048 34 1 4.2215 3.3070 -3.1963 35 1 3.4414 4.8988 -3.3567 36 1 4.4209 4.0377 -6.8005 37 1 3.3621 1.5173 -1.6954 38 1 3.9801 0.5265 -0.3397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122769309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = -92.222707 kcal Electronic energy + Delta-G solvation = -20850.508374 eV Core-core repulsion = 17660.794563 eV Total energy + Delta-G solvation = -3189.713810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78432 -38.35421 -37.25700 -36.90569 -35.85639 -34.54011 -31.04088 -29.81834 -29.58992 -26.82606 -25.40212 -24.29790 -23.42272 -21.59525 -20.02273 -19.04831 -18.51969 -18.30265 -17.39188 -16.99050 -16.61172 -16.26731 -15.34153 -15.23671 -14.95489 -14.83792 -14.37926 -14.26694 -14.04620 -13.99710 -13.76537 -13.37087 -13.24447 -13.08880 -13.07510 -12.99742 -12.56395 -12.50749 -12.43775 -12.19186 -12.10878 -12.00033 -11.76821 -11.67998 -10.63175 -10.09706 -9.81980 -9.45975 -8.23832 -6.35637 -0.45995 1.36674 1.39225 1.51003 1.97617 2.37633 2.54360 3.06984 3.10310 3.30216 3.55178 3.83321 3.97540 4.14184 4.29615 4.39366 4.55184 4.58975 4.64080 4.70710 4.76287 4.81245 4.86391 4.99317 5.00547 5.08019 5.10732 5.13613 5.26753 5.32614 5.47288 5.66582 5.89725 6.04063 6.06925 6.38456 6.72307 7.33498 8.84023 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.005788 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.963634 B = 4836.112453 C = 5548.208549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.079 3.921 4 H 0.063 0.937 5 C -0.103 4.103 6 C 0.110 3.890 7 N -1.019 6.019 8 S 2.808 3.192 9 O -1.005 7.005 10 O -1.002 7.002 11 N -1.004 6.004 12 C 0.100 3.900 13 C 0.273 3.727 14 C -0.550 4.550 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.957 3.043 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.268 1.268 22 C 0.115 3.885 23 H 0.071 0.929 24 H 0.022 0.978 25 H 0.080 0.920 26 H 0.348 0.652 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.015 0.985 35 H 0.029 0.971 36 H 0.268 0.732 37 H 0.058 0.942 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 -4.449 13.655 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C -0.032 4.032 4 H 0.081 0.919 5 C -0.142 4.142 6 C -0.015 4.015 7 N -0.860 5.860 8 S 2.819 3.181 9 O -0.989 6.989 10 O -0.987 6.987 11 N -0.846 5.846 12 C -0.045 4.045 13 C 0.149 3.851 14 C -0.590 4.590 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.193 1.193 22 C -0.011 4.011 23 H 0.090 0.910 24 H 0.040 0.960 25 H 0.099 0.901 26 H 0.167 0.833 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.954 -4.641 14.283 17.485 hybrid contribution 0.310 0.607 -1.999 2.112 sum -8.644 -4.034 12.284 15.552 Atomic orbital electron populations 1.22299 0.86278 1.02828 1.00751 1.60466 1.09107 1.12108 1.50220 1.22707 0.93057 0.90617 0.96867 0.91903 1.22616 0.97822 0.97823 0.95970 1.22015 0.95318 1.00262 0.83876 1.58937 1.54168 1.40474 1.32459 1.00908 0.73160 0.72393 0.71678 1.93558 1.71882 1.66303 1.67141 1.93502 1.73733 1.75325 1.56091 1.57657 1.80786 1.25387 1.20734 1.21458 1.01366 0.83489 0.98212 1.18635 0.95870 0.95319 0.75234 1.21849 1.04761 1.39727 0.92616 0.93205 1.25730 0.98762 0.95141 0.98975 1.70006 1.30942 1.44286 1.11102 0.85527 0.79355 0.78350 0.78610 1.19567 1.20364 1.19316 1.22183 0.94201 0.87567 0.97174 0.90973 0.95984 0.90087 0.83338 0.88164 0.89320 0.90753 0.90511 0.93706 0.89921 0.90196 0.96710 0.95315 0.92297 0.92348 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 127.69 1.35 1.75 16 2 N -0.69 -12.50 6.77 -507.35 -3.43 -15.93 16 3 C 0.08 1.67 3.39 46.31 0.16 1.83 16 4 H 0.06 1.37 7.83 -2.39 -0.02 1.35 16 5 C -0.10 -1.84 6.65 31.79 0.21 -1.63 16 6 C 0.11 2.53 6.99 86.73 0.61 3.13 16 7 N -1.02 -31.77 3.75 -506.40 -1.90 -33.67 16 8 S 2.81 115.98 6.26 -56.49 -0.35 115.62 16 9 O -1.00 -50.54 16.69 -128.00 -2.14 -52.67 16 10 O -1.00 -42.46 16.79 -128.00 -2.15 -44.60 16 11 N -1.00 -42.60 3.23 -543.21 -1.75 -44.35 16 12 C 0.10 3.40 10.33 127.77 1.32 4.72 16 13 C 0.27 14.03 5.12 85.64 0.44 14.46 16 14 C -0.55 -31.70 9.38 25.60 0.24 -31.46 16 15 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 16 C 0.01 0.77 5.46 84.65 0.46 1.23 16 17 N -0.92 -54.19 13.29 21.45 0.28 -53.90 16 18 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.11 3.24 6.38 86.86 0.55 3.80 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.02 0.33 8.09 -2.38 -0.02 0.31 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.35 6.13 8.52 -89.69 -0.76 5.37 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 2.25 7.79 -2.39 -0.02 2.23 16 33 H 0.08 2.47 7.94 -2.38 -0.02 2.45 16 34 H 0.01 0.82 7.61 -2.39 -0.02 0.80 16 35 H 0.03 1.49 7.96 -2.39 -0.02 1.47 16 36 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -71.91 327.04 -3.80 -75.71 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.28 Total: 8.92 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.34 Total: -2.17 kcal Atomic # 7 Polarization: -141.06 SS G_CDS: -6.80 Total: -147.86 kcal Atomic # 8 Polarization: -92.99 SS G_CDS: -4.29 Total: -97.28 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 115.98 SS G_CDS: -0.35 Total: 115.62 kcal Total: -71.91 -3.80 -75.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122769309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.511 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds