Wall clock time and date at job start Mon Mar 30 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.46965 * 2 1 4 4 C 1.46899 * 110.99962 * 298.12031 * 3 2 1 5 5 C 1.50708 * 109.47020 * 292.93872 * 4 3 2 6 6 H 1.07996 * 119.99994 * 354.95625 * 5 4 3 7 7 C 1.37875 * 119.99781 * 174.95537 * 5 4 3 8 8 N 1.31517 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46848 * 90.00584 * 9 7 5 11 11 H 1.48497 * 109.47042 * 210.00487 * 9 7 5 12 12 H 1.48504 * 109.47032 * 330.00461 * 9 7 5 13 13 C 1.46893 * 111.00371 * 62.07643 * 3 2 1 14 14 C 1.50706 * 109.47143 * 66.04428 * 13 3 2 15 15 C 1.34004 * 124.92102 * 90.57761 * 14 13 3 16 16 C 1.46782 * 106.18248 * 180.02562 * 15 14 13 17 17 C 1.39444 * 134.30916 * 179.34585 * 16 15 14 18 18 C 1.37917 * 119.57858 * 180.02562 * 17 16 15 19 19 F 1.35096 * 119.88620 * 179.97438 * 18 17 16 20 20 C 1.38954 * 120.22171 * 0.02562 * 18 17 16 21 21 C 1.37808 * 120.66743 * 359.97438 * 20 18 17 22 22 C 1.38914 * 119.99194 * 0.26372 * 21 20 18 23 23 O 1.34436 * 124.92137 * 269.97828 * 14 13 3 24 24 H 1.09001 * 109.47057 * 299.67057 * 1 2 3 25 25 H 1.08998 * 109.47399 * 59.67478 * 1 2 3 26 26 H 1.09001 * 109.47291 * 179.67546 * 1 2 3 27 27 H 1.08997 * 109.47349 * 240.00126 * 2 1 3 28 28 H 1.09004 * 109.47072 * 119.99475 * 2 1 3 29 29 H 1.08999 * 109.47365 * 52.93384 * 4 3 2 30 30 H 1.08995 * 109.47515 * 172.94117 * 4 3 2 31 31 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46968 * 306.04632 * 13 3 2 33 33 H 1.08996 * 109.47535 * 186.04400 * 13 3 2 34 34 H 1.07999 * 126.90680 * 359.39532 * 15 14 13 35 35 H 1.08001 * 120.20731 * 0.02562 * 17 16 15 36 36 H 1.08003 * 119.66456 * 179.97438 * 20 18 17 37 37 H 1.08000 * 120.00378 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5856 2.0968 -1.2095 5 6 2.2648 1.4993 -2.4149 6 1 3.0108 0.7288 -2.2878 7 6 1.9337 1.9363 -3.6800 8 7 1.0256 2.8750 -3.8347 9 14 2.7761 1.1962 -5.1741 10 1 2.0016 0.0209 -5.6473 11 1 2.8463 2.2110 -6.2560 12 1 4.1499 0.7685 -4.8065 13 6 1.5896 2.0955 1.2117 14 6 2.2534 1.4805 2.4168 15 6 3.4291 1.8710 2.9277 16 6 3.6822 1.0015 4.0829 17 6 4.7171 0.8913 5.0110 18 6 4.6425 -0.0632 6.0036 19 9 5.6419 -0.1757 6.9057 20 6 3.5436 -0.9103 6.0784 21 6 2.5154 -0.8098 5.1663 22 6 2.5739 0.1418 4.1560 23 8 1.7465 0.4683 3.1419 24 1 -0.3633 0.5087 0.8929 25 1 -0.3634 0.5189 -0.8870 26 1 -0.3634 -1.0276 -0.0058 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 0.5051 2.0036 -1.3180 30 1 1.8530 3.1502 -1.1269 31 1 0.7930 3.1827 -4.7248 32 1 0.5072 2.0175 1.3138 33 1 1.8728 3.1454 1.1371 34 1 4.0675 2.6594 2.5573 35 1 5.5715 1.5493 4.9527 36 1 3.4947 -1.6548 6.8592 37 1 1.6665 -1.4740 5.2342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127590154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:39 Heat of formation + Delta-G solvation = -12.054019 kcal Electronic energy + Delta-G solvation = -20804.530653 eV Core-core repulsion = 17462.929304 eV Total energy + Delta-G solvation = -3341.601348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99329 -42.43457 -37.91348 -37.11664 -33.08800 -32.59645 -30.64800 -30.02792 -29.23583 -27.21059 -25.03515 -23.38590 -22.82688 -22.08851 -21.10790 -19.49565 -17.79713 -17.47489 -16.43898 -16.35067 -16.06035 -15.60266 -15.17426 -14.91335 -14.73711 -14.37068 -14.08093 -13.54800 -13.13453 -13.02124 -12.90221 -12.62749 -12.16433 -11.92146 -11.90084 -11.61538 -11.24940 -11.01609 -10.98421 -10.76670 -10.59005 -10.23218 -10.11092 -9.87899 -9.30780 -8.52889 -8.48637 -8.20151 -7.36072 -6.08272 -4.09496 0.71553 1.06453 2.39744 2.71394 3.29041 3.35736 3.40168 3.43327 3.99896 4.35234 4.40007 4.56528 4.84159 4.94928 5.06786 5.17431 5.20048 5.27894 5.52755 5.70756 5.74089 5.75760 5.86576 5.90484 5.92423 5.96709 6.10138 6.12289 6.38548 6.45363 6.57825 6.61745 6.84850 7.14991 7.22939 7.32668 7.71950 7.95667 8.06496 8.42696 8.98115 9.54954 11.02306 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.003586 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.090275 B = 7805.627210 C = 8084.657793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 N -0.529 5.529 4 C 0.188 3.812 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.116 3.884 14 C 0.077 3.923 15 C -0.205 4.205 16 C -0.096 4.096 17 C -0.110 4.110 18 C 0.078 3.922 19 F -0.141 7.141 20 C -0.136 4.136 21 C -0.074 4.074 22 C 0.039 3.961 23 O -0.188 6.188 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.008 0.992 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -4.748 17.604 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.012 4.012 14 C 0.029 3.971 15 C -0.225 4.225 16 C -0.097 4.097 17 C -0.129 4.129 18 C 0.058 3.942 19 F -0.119 7.119 20 C -0.155 4.155 21 C -0.093 4.093 22 C -0.009 4.009 23 O -0.090 6.090 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.405 -4.778 17.420 18.223 hybrid contribution -0.154 -0.271 -0.712 0.777 sum 2.251 -5.049 16.708 17.599 Atomic orbital electron populations 1.22367 0.99053 1.01294 1.01938 1.22003 0.92402 0.90912 1.01591 1.62470 1.59177 1.02256 1.01424 1.19845 0.95092 0.93737 0.84927 1.21103 1.22033 1.21475 0.89864 0.91826 1.24967 0.95262 0.95201 0.99065 1.69950 1.31932 1.29021 1.22899 0.86504 0.80015 0.78751 0.82220 1.20733 1.21253 1.19743 1.20819 0.97287 0.97581 0.85551 1.22692 0.94083 0.87092 0.93266 1.22176 0.98440 1.04669 0.97183 1.19731 0.95076 0.97706 0.97209 1.20392 0.99410 0.99118 0.93962 1.17338 0.87324 0.99011 0.90480 1.91488 1.59246 1.95575 1.65627 1.20773 0.93007 1.00791 1.00924 1.19692 0.99912 0.97402 0.92281 1.19628 0.90657 0.98833 0.91784 1.84050 1.44121 1.45762 1.35021 0.93635 0.91125 0.93225 0.89748 0.92969 0.97432 0.95378 0.92874 0.92963 0.87742 0.82073 0.84324 0.83826 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.26 37.15 0.34 -2.98 16 2 C 0.06 1.13 5.71 -3.82 -0.02 1.11 16 3 N -0.53 -10.79 4.68 -237.52 -1.11 -11.90 16 4 C 0.19 4.58 4.53 -4.97 -0.02 4.56 16 5 C -0.51 -13.64 8.40 -34.44 -0.29 -13.93 16 6 H 0.06 1.72 7.38 -52.49 -0.39 1.34 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 13 C 0.12 1.95 5.26 -4.98 -0.03 1.92 16 14 C 0.08 1.21 5.81 -35.79 -0.21 1.01 16 15 C -0.20 -3.01 11.01 -37.62 -0.41 -3.43 16 16 C -0.10 -1.36 6.39 -105.16 -0.67 -2.03 16 17 C -0.11 -1.35 10.07 -39.25 -0.40 -1.75 16 18 C 0.08 0.91 7.29 -39.43 -0.29 0.62 16 19 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 20 C -0.14 -1.39 9.99 -39.47 -0.39 -1.78 16 21 C -0.07 -0.83 10.06 -39.49 -0.40 -1.22 16 22 C 0.04 0.55 7.41 -38.50 -0.29 0.26 16 23 O -0.19 -2.95 9.88 3.72 0.04 -2.91 16 24 H 0.04 0.75 6.34 -51.93 -0.33 0.42 16 25 H 0.07 1.42 6.28 -51.93 -0.33 1.09 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.76 6.98 -51.93 -0.36 1.39 16 28 H 0.05 0.95 6.67 -51.93 -0.35 0.60 16 29 H 0.01 0.20 6.01 -51.93 -0.31 -0.11 16 30 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.05 0.86 6.07 -51.93 -0.32 0.54 16 33 H 0.10 1.64 7.92 -51.93 -0.41 1.23 16 34 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -28.90 312.86 -8.22 -37.12 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.45 Total: -0.34 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.17 Total: -16.18 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.38 Total: -36.93 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.90 -8.22 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127590154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds