Wall clock time and date at job start Mon Mar 30 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.46965 * 2 1 4 4 C 1.46899 * 110.99962 * 298.12031 * 3 2 1 5 5 C 1.50708 * 109.47020 * 292.93872 * 4 3 2 6 6 H 1.07996 * 119.99994 * 354.95625 * 5 4 3 7 7 C 1.37875 * 119.99781 * 174.95537 * 5 4 3 8 8 N 1.31517 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46848 * 90.00584 * 9 7 5 11 11 H 1.48497 * 109.47042 * 210.00487 * 9 7 5 12 12 H 1.48504 * 109.47032 * 330.00461 * 9 7 5 13 13 C 1.46893 * 111.00371 * 62.07643 * 3 2 1 14 14 C 1.50706 * 109.47143 * 66.04428 * 13 3 2 15 15 C 1.34004 * 124.92102 * 90.57761 * 14 13 3 16 16 C 1.46782 * 106.18248 * 180.02562 * 15 14 13 17 17 C 1.39444 * 134.30916 * 179.34585 * 16 15 14 18 18 C 1.37917 * 119.57858 * 180.02562 * 17 16 15 19 19 F 1.35096 * 119.88620 * 179.97438 * 18 17 16 20 20 C 1.38954 * 120.22171 * 0.02562 * 18 17 16 21 21 C 1.37808 * 120.66743 * 359.97438 * 20 18 17 22 22 C 1.38914 * 119.99194 * 0.26372 * 21 20 18 23 23 O 1.34436 * 124.92137 * 269.97828 * 14 13 3 24 24 H 1.09001 * 109.47057 * 299.67057 * 1 2 3 25 25 H 1.08998 * 109.47399 * 59.67478 * 1 2 3 26 26 H 1.09001 * 109.47291 * 179.67546 * 1 2 3 27 27 H 1.08997 * 109.47349 * 240.00126 * 2 1 3 28 28 H 1.09004 * 109.47072 * 119.99475 * 2 1 3 29 29 H 1.08999 * 109.47365 * 52.93384 * 4 3 2 30 30 H 1.08995 * 109.47515 * 172.94117 * 4 3 2 31 31 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46968 * 306.04632 * 13 3 2 33 33 H 1.08996 * 109.47535 * 186.04400 * 13 3 2 34 34 H 1.07999 * 126.90680 * 359.39532 * 15 14 13 35 35 H 1.08001 * 120.20731 * 0.02562 * 17 16 15 36 36 H 1.08003 * 119.66456 * 179.97438 * 20 18 17 37 37 H 1.08000 * 120.00378 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5856 2.0968 -1.2095 5 6 2.2648 1.4993 -2.4149 6 1 3.0108 0.7288 -2.2878 7 6 1.9337 1.9363 -3.6800 8 7 1.0256 2.8750 -3.8347 9 14 2.7761 1.1962 -5.1741 10 1 2.0016 0.0209 -5.6473 11 1 2.8463 2.2110 -6.2560 12 1 4.1499 0.7685 -4.8065 13 6 1.5896 2.0955 1.2117 14 6 2.2534 1.4805 2.4168 15 6 3.4291 1.8710 2.9277 16 6 3.6822 1.0015 4.0829 17 6 4.7171 0.8913 5.0110 18 6 4.6425 -0.0632 6.0036 19 9 5.6419 -0.1757 6.9057 20 6 3.5436 -0.9103 6.0784 21 6 2.5154 -0.8098 5.1663 22 6 2.5739 0.1418 4.1560 23 8 1.7465 0.4683 3.1419 24 1 -0.3633 0.5087 0.8929 25 1 -0.3634 0.5189 -0.8870 26 1 -0.3634 -1.0276 -0.0058 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 0.5051 2.0036 -1.3180 30 1 1.8530 3.1502 -1.1269 31 1 0.7930 3.1827 -4.7248 32 1 0.5072 2.0175 1.3138 33 1 1.8728 3.1454 1.1371 34 1 4.0675 2.6594 2.5573 35 1 5.5715 1.5493 4.9527 36 1 3.4947 -1.6548 6.8592 37 1 1.6665 -1.4740 5.2342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127590154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:39 Heat of formation + Delta-G solvation = -28.037803 kcal Electronic energy + Delta-G solvation = -20805.223762 eV Core-core repulsion = 17462.929304 eV Total energy + Delta-G solvation = -3342.294457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.90389 -43.50884 -39.18385 -38.39483 -34.81358 -34.00518 -31.85439 -31.00272 -30.85785 -28.77767 -26.52901 -25.06100 -23.96238 -23.13968 -22.31531 -21.02367 -18.79852 -18.51220 -18.29614 -17.53768 -17.21982 -16.84522 -16.61074 -16.34861 -15.98474 -15.77572 -15.26812 -14.73841 -14.44428 -14.37305 -14.06618 -13.84071 -13.62392 -13.44034 -13.14497 -12.91893 -12.87949 -12.68361 -12.58659 -12.42466 -11.97027 -11.90325 -11.60462 -11.34748 -11.14886 -10.58274 -9.50271 -9.27354 -9.00346 -8.17962 -6.26400 -0.23807 0.10364 1.27694 1.42496 1.43443 1.54630 1.63952 2.42240 2.48663 3.02424 3.15420 3.35365 3.45615 3.62104 3.95201 4.03004 4.13416 4.16867 4.23450 4.37403 4.41486 4.56397 4.63740 4.71674 4.82743 4.90847 4.95692 5.00278 5.03106 5.13375 5.20509 5.34068 5.36965 5.47807 5.63893 5.67922 6.05528 6.12187 6.28497 6.55731 6.88568 7.42506 8.92267 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.003586 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.090275 B = 7805.627210 C = 8084.657793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 N -0.538 5.538 4 C 0.203 3.797 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.120 3.880 14 C 0.056 3.944 15 C -0.200 4.200 16 C -0.117 4.117 17 C -0.116 4.116 18 C 0.073 3.927 19 F -0.140 7.140 20 C -0.120 4.120 21 C -0.073 4.073 22 C 0.021 3.979 23 O -0.199 6.199 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.066 0.934 29 H -0.011 1.011 30 H 0.009 0.991 31 H 0.264 0.736 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.179 0.821 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -6.264 19.136 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.065 4.065 3 N -0.262 5.262 4 C 0.078 3.922 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.192 1.192 13 C -0.007 4.007 14 C 0.008 3.992 15 C -0.220 4.220 16 C -0.118 4.118 17 C -0.134 4.134 18 C 0.054 3.946 19 F -0.119 7.119 20 C -0.139 4.139 21 C -0.091 4.091 22 C -0.027 4.027 23 O -0.101 6.101 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.007 0.993 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.188 0.812 35 H 0.169 0.831 36 H 0.196 0.804 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.041 -6.302 18.974 20.224 hybrid contribution -0.293 0.160 -1.008 1.062 sum 2.749 -6.142 17.967 19.185 Atomic orbital electron populations 1.22239 0.97870 1.02422 1.01020 1.21941 0.93346 0.90095 1.01116 1.62313 1.59688 1.02782 1.01400 1.19482 0.93624 0.92877 0.86247 1.21393 1.21926 1.21275 0.91145 0.92408 1.25776 0.95860 0.95565 1.01960 1.70060 1.33241 1.30271 1.23614 0.85492 0.79080 0.78076 0.78640 1.20004 1.20827 1.19235 1.20733 0.97646 0.97732 0.84606 1.22325 0.94762 0.88431 0.93681 1.22405 0.97935 1.04502 0.97162 1.19831 0.96048 0.98219 0.97739 1.20562 0.99424 0.99650 0.93803 1.17514 0.87772 0.99089 0.90226 1.91495 1.59344 1.95549 1.65511 1.21177 0.91561 1.00314 1.00812 1.20088 1.00998 0.96863 0.91190 1.20125 0.90549 0.99806 0.92201 1.83987 1.44696 1.45805 1.35639 0.92426 0.94036 0.91030 0.91871 0.91581 0.99306 0.97287 0.92738 0.92615 0.87130 0.81197 0.83113 0.80381 0.81474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.23 9.26 71.98 0.67 -5.56 16 2 C 0.06 2.43 5.71 86.30 0.49 2.92 16 3 N -0.54 -22.33 4.68 -905.37 -4.24 -26.57 16 4 C 0.20 10.22 4.53 85.56 0.39 10.61 16 5 C -0.52 -28.55 8.40 25.60 0.21 -28.33 16 6 H 0.06 3.18 7.38 -2.91 -0.02 3.16 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 9 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.12 4.10 5.26 85.56 0.45 4.55 16 14 C 0.06 1.75 5.81 24.72 0.14 1.89 16 15 C -0.20 -5.81 11.01 23.54 0.26 -5.55 16 16 C -0.12 -3.17 6.39 -20.21 -0.13 -3.30 16 17 C -0.12 -2.65 10.07 22.48 0.23 -2.43 16 18 C 0.07 1.51 7.29 22.37 0.16 1.68 16 19 F -0.14 -2.92 17.26 44.97 0.78 -2.14 16 20 C -0.12 -2.02 9.99 22.34 0.22 -1.79 16 21 C -0.07 -1.40 10.06 22.33 0.22 -1.18 16 22 C 0.02 0.55 7.41 22.97 0.17 0.72 16 23 O -0.20 -6.06 9.88 -9.60 -0.09 -6.16 16 24 H 0.06 1.87 6.34 -2.39 -0.02 1.85 16 25 H 0.04 1.70 6.28 -2.39 -0.01 1.68 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.67 6.98 -2.39 -0.02 2.65 16 28 H 0.07 2.36 6.67 -2.39 -0.02 2.35 16 29 H -0.01 -0.58 6.01 -2.39 -0.01 -0.59 16 30 H 0.01 0.48 7.91 -2.39 -0.02 0.46 16 31 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 32 H 0.06 1.85 6.07 -2.38 -0.01 1.83 16 33 H 0.11 3.55 7.92 -2.39 -0.02 3.53 16 34 H 0.17 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -62.30 312.86 3.79 -58.50 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.09 Total: 9.75 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.95 Total: -24.95 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.96 Total: -80.67 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.09 Total: -6.16 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.30 3.79 -58.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127590154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.467 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds