Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47128 * 2 1 4 4 C 1.50698 * 109.47400 * 120.00292 * 2 1 3 5 5 H 1.08003 * 120.00198 * 119.99550 * 4 2 1 6 6 C 1.37875 * 119.99742 * 300.00160 * 4 2 1 7 7 N 1.31516 * 119.99775 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00319 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.46730 * 90.00380 * 8 6 4 10 10 H 1.48494 * 109.47313 * 210.00298 * 8 6 4 11 11 H 1.48498 * 109.46911 * 330.00763 * 8 6 4 12 12 S 1.81407 * 109.46853 * 240.00208 * 2 1 3 13 13 C 1.76194 * 102.99813 * 172.12388 * 12 2 1 14 14 C 1.38730 * 120.10494 * 354.28292 * 13 12 2 15 15 C 1.38241 * 119.99384 * 179.97438 * 14 13 12 16 16 C 1.38272 * 120.20073 * 0.02562 * 15 14 13 17 17 C 1.38285 * 120.19898 * 359.67925 * 16 15 14 18 18 C 1.38639 * 120.00676 * 0.59985 * 17 16 15 19 19 N 1.40003 * 120.09940 * 179.70223 * 18 17 16 20 20 C 1.46498 * 120.00085 * 359.44564 * 19 18 17 21 21 C 1.53002 * 109.46975 * 180.28131 * 20 19 18 22 22 C 1.53002 * 117.49490 * 243.61829 * 21 20 19 23 23 C 1.52995 * 60.00229 * 252.51435 * 22 21 20 24 24 H 1.09000 * 109.47104 * 186.07429 * 1 2 3 25 25 H 1.09000 * 109.46995 * 306.07031 * 1 2 3 26 26 H 1.08993 * 109.47558 * 66.06829 * 1 2 3 27 27 H 0.97004 * 120.00336 * 179.97438 * 7 6 4 28 28 H 1.07998 * 119.99884 * 0.02562 * 14 13 12 29 29 H 1.08004 * 119.90070 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.89673 * 179.97438 * 16 15 14 31 31 H 1.08003 * 119.99411 * 180.30207 * 17 16 15 32 32 H 0.97009 * 119.99634 * 179.72683 * 19 18 17 33 33 H 1.09003 * 109.46860 * 300.27841 * 20 19 18 34 34 H 1.08997 * 109.47161 * 60.27697 * 20 19 18 35 35 H 1.08991 * 115.55264 * 29.32868 * 21 20 19 36 36 H 1.09005 * 117.50033 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49807 * 145.02279 * 22 21 20 38 38 H 1.09005 * 117.49880 * 252.51379 * 23 22 21 39 39 H 1.08992 * 117.49829 * 107.49017 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8598 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1771 1.4923 12 16 2.1346 -0.8551 -1.4812 13 6 3.8701 -0.5548 -1.4316 14 6 4.4031 0.2883 -0.4674 15 6 5.7651 0.5219 -0.4302 16 6 6.5998 -0.0822 -1.3523 17 6 6.0780 -0.9289 -2.3130 18 6 4.7127 -1.1646 -2.3617 19 7 4.1816 -2.0165 -3.3375 20 6 5.0675 -2.6509 -4.3167 21 6 4.2395 -3.5192 -5.2662 22 6 4.5020 -5.0265 -5.2550 23 6 4.9692 -4.1774 -6.4389 24 1 -0.3633 -1.0219 0.1087 25 1 -0.3633 0.6051 0.8307 26 1 -0.3634 0.4168 -0.9392 27 1 1.9033 -0.5282 4.4375 28 1 3.7540 0.7615 0.2546 29 1 6.1785 1.1783 0.3213 30 1 7.6631 0.1041 -1.3190 31 1 6.7336 -1.4028 -3.0286 32 1 3.2264 -2.1835 -3.3677 33 1 5.5875 -1.8819 -4.8880 34 1 5.7963 -3.2733 -3.7977 35 1 3.2147 -3.1877 -5.4333 36 1 5.2643 -5.3996 -4.5710 37 1 3.6497 -5.6870 -5.4147 38 1 4.4243 -4.2793 -7.3775 39 1 6.0390 -3.9919 -6.5340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127933732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = 34.169413 kcal Electronic energy + Delta-G solvation = -18815.963194 eV Core-core repulsion = 16042.579420 eV Total energy + Delta-G solvation = -2773.383774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23600 -38.53984 -36.28936 -35.60853 -33.23035 -31.84180 -30.45856 -27.34141 -26.90994 -23.84443 -23.69185 -23.22789 -22.14189 -21.50387 -18.92485 -18.52504 -17.52449 -17.44359 -16.99452 -16.15733 -15.72777 -15.37808 -15.19683 -15.13749 -14.79507 -14.53308 -14.39590 -14.16004 -13.75115 -13.54768 -13.02111 -12.82555 -12.48229 -12.38469 -12.35125 -12.27789 -11.84489 -11.54002 -11.41013 -11.35256 -11.29577 -10.80884 -10.77354 -10.70988 -10.34585 -8.73131 -8.33979 -7.78381 -6.40747 0.49244 0.75240 0.99214 1.27457 1.33146 1.42495 1.80537 2.26538 2.48069 2.95024 2.98011 3.01308 3.72545 3.99054 4.05383 4.10297 4.26584 4.32659 4.33867 4.46210 4.53108 4.56930 4.59094 4.70025 4.78851 4.80477 4.86609 4.88227 5.03360 5.12788 5.23559 5.27131 5.28208 5.33455 5.39939 5.54707 5.78540 6.01722 6.13155 6.47966 6.62483 6.76392 7.21545 8.81906 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.004871 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.752627 B = 5746.833135 C = 6453.198501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.048 3.952 3 H 0.045 0.955 4 C -0.509 4.509 5 H 0.036 0.964 6 C 0.026 3.974 7 N -0.938 5.938 8 Si 0.941 3.059 9 H -0.260 1.260 10 H -0.295 1.295 11 H -0.247 1.247 12 S -0.160 6.160 13 C -0.161 4.161 14 C -0.088 4.088 15 C -0.179 4.179 16 C -0.077 4.077 17 C -0.193 4.193 18 C 0.218 3.782 19 N -0.744 5.744 20 C 0.160 3.840 21 C -0.181 4.181 22 C -0.182 4.182 23 C -0.154 4.154 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.268 0.732 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -1.323 -18.028 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 H 0.063 0.937 4 C -0.548 4.548 5 H 0.054 0.946 6 C -0.174 4.174 7 N -0.578 5.578 8 Si 0.767 3.233 9 H -0.186 1.186 10 H -0.223 1.223 11 H -0.171 1.171 12 S 0.084 5.916 13 C -0.278 4.278 14 C -0.112 4.112 15 C -0.201 4.201 16 C -0.098 4.098 17 C -0.217 4.217 18 C 0.109 3.891 19 N -0.375 5.375 20 C 0.037 3.963 21 C -0.200 4.200 22 C -0.219 4.219 23 C -0.191 4.191 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.672 -2.044 -18.785 19.729 hybrid contribution -0.284 1.036 1.963 2.237 sum 5.388 -1.009 -16.822 17.693 Atomic orbital electron populations 1.21900 0.94123 1.02152 1.01138 1.21248 0.96620 0.97013 0.93262 0.93690 1.21040 1.31688 1.12486 0.89597 0.94604 1.25775 0.96857 0.99690 0.95086 1.70022 1.46891 1.42175 0.98662 0.85960 0.79622 0.80065 0.77620 1.18591 1.22277 1.17146 1.83846 1.00467 1.73305 1.34030 1.21192 0.96660 1.07001 1.02950 1.21222 0.96926 0.96848 0.96239 1.21047 0.92536 1.04509 1.01966 1.21206 1.00443 0.94874 0.93228 1.20776 0.91962 1.05175 1.03783 1.17530 0.92391 0.90381 0.88753 1.44855 1.09745 1.50533 1.32396 1.20946 0.91874 0.95045 0.88482 1.22373 1.00754 0.95231 1.01628 1.23140 1.03884 0.92665 1.02204 1.23038 1.01386 1.01865 0.92829 0.92275 0.92979 0.90855 0.92263 0.87235 0.85468 0.82885 0.83429 0.76669 0.91098 0.92110 0.87836 0.88609 0.88344 0.87415 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.60 71.98 0.62 -4.95 16 2 C 0.05 2.24 1.60 29.85 0.05 2.29 16 3 H 0.05 2.15 6.06 -2.39 -0.01 2.14 16 4 C -0.51 -28.76 7.48 25.60 0.19 -28.57 16 5 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 6 C 0.03 1.47 5.45 84.65 0.46 1.93 16 7 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 8 Si 0.94 43.46 24.31 68.60 1.67 45.12 16 9 H -0.26 -11.33 6.92 99.48 0.69 -10.64 16 10 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.25 -10.61 6.53 99.48 0.65 -9.96 16 12 S -0.16 -6.76 19.77 -56.49 -1.12 -7.87 16 13 C -0.16 -6.75 6.05 22.70 0.14 -6.61 16 14 C -0.09 -3.82 8.80 22.39 0.20 -3.62 16 15 C -0.18 -6.42 10.04 22.28 0.22 -6.20 16 16 C -0.08 -2.26 10.04 22.29 0.22 -2.04 16 17 C -0.19 -5.72 9.31 22.38 0.21 -5.51 16 18 C 0.22 7.64 6.66 38.24 0.25 7.90 16 19 N -0.74 -22.01 5.68 -338.83 -1.93 -23.94 16 20 C 0.16 3.42 5.20 86.38 0.45 3.87 16 21 C -0.18 -3.30 5.85 -10.79 -0.06 -3.36 16 22 C -0.18 -2.94 10.18 30.59 0.31 -2.63 16 23 C -0.15 -2.04 10.25 30.59 0.31 -1.73 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.05 2.15 3.46 -2.39 -0.01 2.14 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.11 5.30 5.09 -2.91 -0.01 5.28 16 29 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.15 3.35 6.74 -2.91 -0.02 3.33 16 32 H 0.40 12.33 6.95 -92.70 -0.64 11.68 16 33 H 0.07 1.36 7.96 -2.39 -0.02 1.34 16 34 H 0.06 1.27 7.68 -2.39 -0.02 1.25 16 35 H 0.10 2.01 8.04 -2.39 -0.02 1.99 16 36 H 0.10 1.56 8.03 -2.38 -0.02 1.54 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.05 322.87 2.83 -63.22 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.33 Total: 30.29 kcal Atomic # 6 Polarization: -52.81 SS G_CDS: 3.57 Total: -49.23 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.63 Total: -81.53 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.67 Total: 45.12 kcal Atomic # 16 Polarization: -6.76 SS G_CDS: -1.12 Total: -7.87 kcal Total: -66.05 2.83 -63.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127933732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.391 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds