Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.68175 * 2 1 4 4 C 1.53330 * 109.68081 * 120.52588 * 2 1 3 5 5 C 1.52736 * 108.36408 * 189.67142 * 4 2 1 6 6 C 1.50627 * 110.58798 * 308.92692 * 5 4 2 7 7 C 1.39131 * 117.75104 * 197.48515 * 6 5 4 8 8 F 1.35106 * 119.75006 * 0.22272 * 7 6 5 9 9 C 1.38155 * 120.49282 * 180.24097 * 7 6 5 10 10 C 1.38224 * 119.74204 * 359.97438 * 9 7 6 11 11 C 1.37946 * 119.79890 * 359.90030 * 10 9 7 12 12 C 1.37627 * 122.58010 * 17.55238 * 6 5 4 13 13 C 1.50639 * 122.56216 * 359.63269 * 12 6 5 14 14 H 1.09008 * 109.21744 * 257.25750 * 13 12 6 15 15 N 1.46498 * 109.25327 * 137.81726 * 13 12 6 16 16 C 1.34777 * 120.00222 * 83.89084 * 15 13 12 17 17 O 1.21692 * 119.99805 * 359.97438 * 16 15 13 18 18 C 1.46373 * 120.00310 * 180.02562 * 16 15 13 19 19 H 1.08002 * 119.99898 * 359.97438 * 18 16 15 20 20 C 1.40050 * 120.00191 * 180.02562 * 18 16 15 21 21 N 1.30668 * 119.99648 * 359.97438 * 20 18 16 22 22 Si 1.86791 * 119.99984 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47454 * 89.99575 * 22 20 18 24 24 H 1.48507 * 109.47194 * 209.99720 * 22 20 18 25 25 H 1.48504 * 109.47436 * 329.99559 * 22 20 18 26 26 H 1.09000 * 109.47019 * 299.47518 * 1 2 3 27 27 H 1.09006 * 109.47252 * 59.47623 * 1 2 3 28 28 H 1.08998 * 109.47503 * 179.47274 * 1 2 3 29 29 H 1.09002 * 109.69119 * 69.95657 * 4 2 1 30 30 H 1.08997 * 109.71834 * 309.40650 * 4 2 1 31 31 H 1.08999 * 109.25375 * 69.21876 * 5 4 2 32 32 H 1.09008 * 109.25454 * 188.64352 * 5 4 2 33 33 H 1.08006 * 120.12722 * 180.02562 * 9 7 6 34 34 H 1.08001 * 120.10463 * 179.97438 * 10 9 7 35 35 H 1.08000 * 119.69774 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99829 * 263.89029 * 15 13 12 37 37 H 0.97001 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0464 -0.7333 1.2436 5 6 3.5539 -0.5092 1.3431 6 6 4.2262 -0.8419 0.0368 7 6 5.6013 -1.0532 0.0512 8 9 6.2816 -0.9606 1.2148 9 6 6.2762 -1.3568 -1.1154 10 6 5.5798 -1.4517 -2.3056 11 6 4.2160 -1.2448 -2.3203 12 6 3.5343 -0.9399 -1.1489 13 6 2.0452 -0.7306 -1.2383 14 1 1.5508 -1.6990 -1.3160 15 7 1.7398 0.0645 -2.4303 16 6 1.6211 -0.5380 -3.6300 17 8 1.7679 -1.7424 -3.7232 18 6 1.3165 0.2565 -4.8211 19 1 1.1866 1.3255 -4.7384 20 6 1.1926 -0.3696 -6.0677 21 7 1.3493 -1.6630 -6.1675 22 14 0.8033 0.6442 -7.5874 23 1 2.0691 1.0965 -8.2185 24 1 0.0376 -0.1848 -8.5528 25 1 -0.0065 1.8270 -7.1995 26 1 -0.3633 0.5057 0.8947 27 1 -0.3634 0.5220 -0.8853 28 1 -0.3634 -1.0276 -0.0095 29 1 1.8389 -1.7996 1.1539 30 1 1.5569 -0.3377 2.1335 31 1 3.7466 0.5346 1.5909 32 1 3.9609 -1.1456 2.1290 33 1 7.3436 -1.5201 -1.0973 34 1 6.1016 -1.6882 -3.2211 35 1 3.6734 -1.3197 -3.2511 36 1 1.6231 1.0246 -2.3560 37 1 1.2638 -2.0967 -7.0310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153957744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -94.590583 kcal Electronic energy + Delta-G solvation = -21828.807975 eV Core-core repulsion = 18483.627573 eV Total energy + Delta-G solvation = -3345.180402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88181 -41.35382 -39.00777 -37.64315 -34.99257 -34.29287 -32.69855 -31.59005 -29.80509 -28.44394 -26.97837 -24.46583 -23.01717 -22.82568 -21.55055 -20.63728 -19.06817 -18.27997 -17.45326 -17.43311 -16.87904 -16.66522 -16.35692 -15.91890 -15.67317 -14.86280 -14.79876 -14.53277 -14.38414 -14.13740 -13.84811 -13.74647 -13.43279 -13.05631 -12.86356 -12.70172 -12.63819 -12.58158 -12.46877 -12.20792 -12.03454 -11.65068 -11.45741 -11.31662 -10.90666 -9.86890 -9.65250 -9.56947 -9.39406 -8.26975 -6.82629 0.21696 0.23847 1.40398 1.40798 1.55631 2.24516 2.48613 2.59501 3.12056 3.26965 3.57174 3.60678 3.76022 3.89310 3.96755 4.14027 4.20729 4.32206 4.42937 4.53803 4.59377 4.71485 4.82064 4.82566 5.02055 5.02494 5.09280 5.11358 5.17989 5.26864 5.33655 5.37388 5.47173 5.52886 5.67942 5.90895 6.01706 6.25669 6.31473 6.89812 7.57877 8.52276 8.69758 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.005767 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.222001 B = 4853.634760 C = 5822.926955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.087 0.913 4 C -0.104 4.104 5 C -0.075 4.075 6 C -0.108 4.108 7 C 0.074 3.926 8 F -0.139 7.139 9 C -0.149 4.149 10 C -0.111 4.111 11 C -0.136 4.136 12 C -0.072 4.072 13 C 0.199 3.801 14 H 0.052 0.948 15 N -0.744 5.744 16 C 0.548 3.452 17 O -0.618 6.618 18 C -0.573 4.573 19 H 0.083 0.917 20 C 0.034 3.966 21 N -0.818 5.818 22 Si 0.990 3.010 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.251 1.251 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.393 0.607 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 5.411 13.151 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.055 3.945 8 F -0.117 7.117 9 C -0.168 4.168 10 C -0.129 4.129 11 C -0.154 4.154 12 C -0.074 4.074 13 C 0.094 3.906 14 H 0.070 0.930 15 N -0.397 5.397 16 C 0.352 3.648 17 O -0.505 6.505 18 C -0.610 4.610 19 H 0.101 0.899 20 C -0.181 4.181 21 N -0.447 5.447 22 Si 0.810 3.190 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.174 1.174 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.132 0.868 36 H 0.227 0.773 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.113 4.386 13.040 14.359 hybrid contribution 0.048 0.293 -1.114 1.152 sum 4.161 4.678 11.926 13.470 Atomic orbital electron populations 1.21747 0.93746 1.01657 1.02430 1.21364 0.96694 0.99899 0.92705 0.89481 1.21586 0.94137 1.00607 0.97805 1.20483 0.95520 1.03184 0.91971 1.19879 0.91835 1.02519 0.96710 1.17706 0.89958 1.05047 0.81823 1.91446 1.79718 1.94062 1.46499 1.21238 1.01683 1.02879 0.90970 1.21100 0.93635 0.99642 0.98521 1.21971 0.95524 0.97964 0.99935 1.20191 0.97098 0.98241 0.91848 1.19466 0.88964 0.95436 0.86779 0.92987 1.45902 1.77190 1.10152 1.06447 1.18390 0.76156 0.87165 0.83063 1.90562 1.56931 1.16881 1.86160 1.21406 1.51997 0.95484 0.92120 0.89922 1.26826 0.91951 0.95824 1.03530 1.70168 1.36697 1.11695 1.26155 0.85127 0.79124 0.78595 0.76147 1.18875 1.19934 1.17404 0.89635 0.93597 0.93769 0.92289 0.87544 0.88787 0.89363 0.82403 0.84516 0.86799 0.77321 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.10 71.98 0.66 -2.84 16 2 C -0.09 -2.35 2.24 -10.77 -0.02 -2.38 16 3 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 4 C -0.10 -2.26 5.28 30.62 0.16 -2.10 16 5 C -0.07 -1.72 5.34 29.74 0.16 -1.56 16 6 C -0.11 -3.38 5.74 -19.82 -0.11 -3.50 16 7 C 0.07 2.24 7.21 22.46 0.16 2.40 16 8 F -0.14 -3.82 16.47 44.97 0.74 -3.08 16 9 C -0.15 -4.47 10.02 22.25 0.22 -4.25 16 10 C -0.11 -3.96 10.05 22.20 0.22 -3.73 16 11 C -0.14 -5.87 8.99 22.36 0.20 -5.67 16 12 C -0.07 -2.75 5.55 -19.86 -0.11 -2.86 16 13 C 0.20 7.63 1.97 44.14 0.09 7.71 16 14 H 0.05 2.37 7.56 -2.38 -0.02 2.36 16 15 N -0.74 -32.37 4.49 -450.91 -2.02 -34.39 16 16 C 0.55 30.38 6.26 86.36 0.54 30.92 16 17 O -0.62 -39.35 12.76 -4.32 -0.06 -39.40 16 18 C -0.57 -31.71 9.54 24.83 0.24 -31.47 16 19 H 0.08 4.15 7.85 -2.91 -0.02 4.12 16 20 C 0.03 1.87 5.50 85.31 0.47 2.34 16 21 N -0.82 -49.02 11.83 21.84 0.26 -48.76 16 22 Si 0.99 40.55 29.56 68.60 2.03 42.58 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.31 7.91 -2.38 -0.02 1.29 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.41 8.10 -2.39 -0.02 1.40 16 30 H 0.11 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.82 7.85 -2.38 -0.02 1.80 16 33 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.11 6.12 4.36 -2.91 -0.01 6.10 16 36 H 0.39 15.04 8.57 -92.71 -0.79 14.24 16 37 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 Total: -1.00 -71.10 306.48 4.12 -66.98 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.30 Total: 33.07 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 2.87 Total: -16.99 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.77 Total: -83.15 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.06 Total: -39.40 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.74 Total: -3.08 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -71.10 4.12 -66.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153957744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.611 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds