Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.68340 * 2 1 4 4 C 1.53329 * 109.68537 * 239.47651 * 2 1 3 5 5 C 1.52733 * 108.39519 * 170.42599 * 4 2 1 6 6 C 1.50630 * 110.60195 * 51.03152 * 5 4 2 7 7 C 1.39138 * 117.75590 * 162.34007 * 6 5 4 8 8 F 1.35096 * 119.75227 * 359.73623 * 7 6 5 9 9 C 1.38153 * 120.48915 * 179.73658 * 7 6 5 10 10 C 1.38227 * 119.74568 * 359.96221 * 9 7 6 11 11 C 1.37934 * 119.79833 * 0.13728 * 10 9 7 12 12 C 1.37619 * 122.57876 * 342.27684 * 6 5 4 13 13 C 1.50648 * 122.57131 * 0.71172 * 12 6 5 14 14 H 1.09010 * 109.23223 * 102.46727 * 13 12 6 15 15 N 1.46502 * 109.28738 * 221.90566 * 13 12 6 16 16 C 1.34783 * 120.00070 * 276.09886 * 15 13 12 17 17 O 1.21688 * 120.00030 * 0.02562 * 16 15 13 18 18 C 1.46372 * 119.99585 * 180.02562 * 16 15 13 19 19 H 1.07996 * 120.00678 * 359.97438 * 18 16 15 20 20 C 1.40050 * 119.99759 * 180.02562 * 18 16 15 21 21 N 1.30676 * 119.99949 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00190 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47278 * 120.00290 * 22 20 18 25 25 H 1.48506 * 109.47069 * 239.99985 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00304 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00285 * 1 2 3 29 29 H 1.09000 * 109.67596 * 290.14839 * 4 2 1 30 30 H 1.08998 * 109.68049 * 50.66430 * 4 2 1 31 31 H 1.08995 * 109.24841 * 171.32454 * 5 4 2 32 32 H 1.09000 * 109.25035 * 290.78436 * 5 4 2 33 33 H 1.08003 * 120.12707 * 179.97438 * 9 7 6 34 34 H 1.08002 * 120.10021 * 180.11063 * 10 9 7 35 35 H 1.08009 * 119.70216 * 180.02562 * 11 10 9 36 36 H 0.97000 * 119.99594 * 96.10255 * 15 13 12 37 37 H 0.97006 * 120.00157 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0465 -0.7332 -1.2436 5 6 3.5544 -0.5116 -1.3423 6 6 4.2257 -0.8450 -0.0357 7 6 5.6000 -1.0621 -0.0502 8 9 6.2803 -0.9749 -1.2141 9 6 6.2740 -1.3661 1.1168 10 6 5.5778 -1.4545 2.3077 11 6 4.2151 -1.2414 2.3225 12 6 3.5339 -0.9383 1.1503 13 6 2.0445 -0.7303 1.2389 14 1 1.5506 -1.6990 1.3161 15 7 1.7369 0.0643 2.4306 16 6 1.6173 -0.5386 3.6302 17 8 1.7652 -1.7429 3.7233 18 6 1.3094 0.2553 4.8207 19 1 1.1786 1.3241 4.7382 20 6 1.1857 -0.3711 6.0672 21 7 1.3455 -1.6641 6.1674 22 14 0.7935 0.6421 7.5868 23 1 0.6621 2.0719 7.2081 24 1 -0.4822 0.1688 8.1816 25 1 1.8883 0.4907 8.5787 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8372 -1.7992 -1.1545 30 1 1.5576 -0.3363 -2.1333 31 1 3.9606 -1.1486 -2.1279 32 1 3.7488 0.5321 -1.5895 33 1 7.3407 -1.5340 1.0988 34 1 6.0992 -1.6900 3.2237 35 1 3.6727 -1.3104 3.2540 36 1 1.6193 1.0243 2.3564 37 1 1.2594 -2.0981 7.0307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153957859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -76.243342 kcal Electronic energy + Delta-G solvation = -21827.235399 eV Core-core repulsion = 18482.850592 eV Total energy + Delta-G solvation = -3344.384806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.61237 -39.93971 -37.21868 -36.26286 -33.28462 -32.36670 -31.37530 -30.06226 -28.49428 -26.67234 -25.46057 -23.17538 -21.62283 -21.50759 -19.69941 -19.35631 -17.24448 -16.90072 -16.11365 -15.63024 -15.41534 -15.25876 -14.88745 -14.20939 -14.17327 -13.59863 -13.57170 -13.26957 -12.87943 -12.62333 -12.36677 -12.16667 -12.08076 -11.58080 -11.48010 -11.20250 -11.17982 -11.07923 -10.85576 -10.54265 -10.47091 -10.36120 -10.18356 -10.01114 -8.91945 -8.37514 -8.14813 -7.70229 -7.59212 -6.25962 -4.71452 1.59424 1.62700 3.08922 3.18191 3.21987 3.97731 4.08265 4.45193 4.57516 4.69123 4.81984 4.89171 5.12285 5.15188 5.36431 5.41946 5.54736 5.65307 5.67739 5.75661 5.87933 5.90628 5.95684 6.01760 6.11513 6.21281 6.23578 6.36104 6.48602 6.51847 6.57660 6.66864 6.96942 7.09505 7.37411 7.43586 7.85752 8.01671 8.26456 8.96153 9.44323 10.50862 10.68642 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.005765 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.290409 B = 4855.630799 C = 5825.681238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.075 4.075 6 C -0.113 4.113 7 C 0.074 3.926 8 F -0.149 7.149 9 C -0.159 4.159 10 C -0.106 4.106 11 C -0.102 4.102 12 C -0.056 4.056 13 C 0.198 3.802 14 H 0.091 0.909 15 N -0.757 5.757 16 C 0.555 3.445 17 O -0.575 6.575 18 C -0.544 4.544 19 H 0.068 0.932 20 C 0.089 3.911 21 N -0.765 5.765 22 Si 0.906 3.094 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.382 0.618 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 3.450 -11.201 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.112 4.112 6 C -0.115 4.115 7 C 0.055 3.945 8 F -0.128 7.128 9 C -0.178 4.178 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.058 4.058 13 C 0.092 3.908 14 H 0.108 0.892 15 N -0.411 5.411 16 C 0.360 3.640 17 O -0.459 6.459 18 C -0.581 4.581 19 H 0.086 0.914 20 C -0.131 4.131 21 N -0.394 5.394 22 Si 0.730 3.270 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.214 0.786 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.565 2.395 -11.042 11.847 hybrid contribution 0.140 0.925 0.600 1.111 sum 3.705 3.320 -10.441 11.566 Atomic orbital electron populations 1.21766 0.94421 1.02099 1.01638 1.21374 0.96218 0.99706 0.94213 0.90821 1.21580 0.94351 1.01184 0.97660 1.20345 0.95415 1.01710 0.93759 1.19593 0.91536 1.04119 0.96204 1.17619 0.89896 1.05646 0.81387 1.91413 1.79996 1.94258 1.47106 1.20976 1.00226 1.04600 0.92039 1.21007 0.94725 0.99657 0.97004 1.22216 0.94090 0.94800 1.00852 1.20246 0.97226 0.97000 0.91364 1.19369 0.88706 0.96845 0.85924 0.89171 1.46255 1.78375 1.09603 1.06832 1.18208 0.76643 0.87635 0.81488 1.90604 1.55225 1.15001 1.85078 1.20924 1.51330 0.94640 0.91175 0.91378 1.25685 0.92881 0.94707 0.99849 1.70015 1.35179 1.09310 1.24889 0.86346 0.78476 0.80732 0.81416 1.18787 1.20170 1.20161 0.92671 0.93085 0.91789 0.91373 0.91226 0.90949 0.90813 0.85631 0.85556 0.82127 0.78616 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.10 37.16 0.34 -1.55 16 2 C -0.10 -1.36 2.24 -90.59 -0.20 -1.56 16 3 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 4 C -0.11 -1.36 5.29 -26.70 -0.14 -1.50 16 5 C -0.08 -1.00 5.34 -28.05 -0.15 -1.15 16 6 C -0.11 -1.86 5.74 -104.55 -0.60 -2.46 16 7 C 0.07 1.20 7.21 -39.28 -0.28 0.92 16 8 F -0.15 -2.32 16.47 2.25 0.04 -2.28 16 9 C -0.16 -2.53 10.02 -39.62 -0.40 -2.93 16 10 C -0.11 -1.86 10.05 -39.70 -0.40 -2.25 16 11 C -0.10 -2.09 8.99 -39.44 -0.35 -2.44 16 12 C -0.06 -1.06 5.55 -104.62 -0.58 -1.64 16 13 C 0.20 3.66 1.97 -69.24 -0.14 3.52 16 14 H 0.09 1.91 7.56 -51.92 -0.39 1.52 16 15 N -0.76 -15.75 4.48 -56.50 -0.25 -16.00 16 16 C 0.56 14.53 6.25 -12.99 -0.08 14.44 16 17 O -0.58 -17.01 12.77 5.20 0.07 -16.95 16 18 C -0.54 -14.52 9.54 -35.63 -0.34 -14.86 16 19 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 20 C 0.09 2.37 5.50 -17.36 -0.10 2.27 16 21 N -0.77 -21.87 11.83 55.55 0.66 -21.21 16 22 Si 0.91 19.47 29.56 -169.99 -5.02 14.44 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.93 7.89 -51.93 -0.41 0.52 16 29 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.16 3.95 4.37 -52.48 -0.23 3.72 16 36 H 0.38 7.14 8.57 -40.82 -0.35 6.79 16 37 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -30.50 306.46 -8.03 -38.53 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.71 Total: 10.03 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.42 Total: -11.19 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.40 Total: -37.21 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.07 Total: -16.95 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.50 -8.03 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153957859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.712 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds