Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.68340 * 2 1 4 4 C 1.53329 * 109.68537 * 239.47651 * 2 1 3 5 5 C 1.52733 * 108.39519 * 170.42599 * 4 2 1 6 6 C 1.50630 * 110.60195 * 51.03152 * 5 4 2 7 7 C 1.39138 * 117.75590 * 162.34007 * 6 5 4 8 8 F 1.35096 * 119.75227 * 359.73623 * 7 6 5 9 9 C 1.38153 * 120.48915 * 179.73658 * 7 6 5 10 10 C 1.38227 * 119.74568 * 359.96221 * 9 7 6 11 11 C 1.37934 * 119.79833 * 0.13728 * 10 9 7 12 12 C 1.37619 * 122.57876 * 342.27684 * 6 5 4 13 13 C 1.50648 * 122.57131 * 0.71172 * 12 6 5 14 14 H 1.09010 * 109.23223 * 102.46727 * 13 12 6 15 15 N 1.46502 * 109.28738 * 221.90566 * 13 12 6 16 16 C 1.34783 * 120.00070 * 276.09886 * 15 13 12 17 17 O 1.21688 * 120.00030 * 0.02562 * 16 15 13 18 18 C 1.46372 * 119.99585 * 180.02562 * 16 15 13 19 19 H 1.07996 * 120.00678 * 359.97438 * 18 16 15 20 20 C 1.40050 * 119.99759 * 180.02562 * 18 16 15 21 21 N 1.30676 * 119.99949 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00190 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47278 * 120.00290 * 22 20 18 25 25 H 1.48506 * 109.47069 * 239.99985 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00304 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00285 * 1 2 3 29 29 H 1.09000 * 109.67596 * 290.14839 * 4 2 1 30 30 H 1.08998 * 109.68049 * 50.66430 * 4 2 1 31 31 H 1.08995 * 109.24841 * 171.32454 * 5 4 2 32 32 H 1.09000 * 109.25035 * 290.78436 * 5 4 2 33 33 H 1.08003 * 120.12707 * 179.97438 * 9 7 6 34 34 H 1.08002 * 120.10021 * 180.11063 * 10 9 7 35 35 H 1.08009 * 119.70216 * 180.02562 * 11 10 9 36 36 H 0.97000 * 119.99594 * 96.10255 * 15 13 12 37 37 H 0.97006 * 120.00157 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0465 -0.7332 -1.2436 5 6 3.5544 -0.5116 -1.3423 6 6 4.2257 -0.8450 -0.0357 7 6 5.6000 -1.0621 -0.0502 8 9 6.2803 -0.9749 -1.2141 9 6 6.2740 -1.3661 1.1168 10 6 5.5778 -1.4545 2.3077 11 6 4.2151 -1.2414 2.3225 12 6 3.5339 -0.9383 1.1503 13 6 2.0445 -0.7303 1.2389 14 1 1.5506 -1.6990 1.3161 15 7 1.7369 0.0643 2.4306 16 6 1.6173 -0.5386 3.6302 17 8 1.7652 -1.7429 3.7233 18 6 1.3094 0.2553 4.8207 19 1 1.1786 1.3241 4.7382 20 6 1.1857 -0.3711 6.0672 21 7 1.3455 -1.6641 6.1674 22 14 0.7935 0.6421 7.5868 23 1 0.6621 2.0719 7.2081 24 1 -0.4822 0.1688 8.1816 25 1 1.8883 0.4907 8.5787 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8372 -1.7992 -1.1545 30 1 1.5576 -0.3363 -2.1333 31 1 3.9606 -1.1486 -2.1279 32 1 3.7488 0.5321 -1.5895 33 1 7.3407 -1.5340 1.0988 34 1 6.0992 -1.6900 3.2237 35 1 3.6727 -1.3104 3.2540 36 1 1.6193 1.0243 2.3564 37 1 1.2594 -2.0981 7.0307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153957859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -94.631880 kcal Electronic energy + Delta-G solvation = -21828.032785 eV Core-core repulsion = 18482.850592 eV Total energy + Delta-G solvation = -3345.182193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.88413 -41.35285 -39.00930 -37.64300 -34.99258 -34.29390 -32.69831 -31.58953 -29.80638 -28.44520 -26.97855 -24.46709 -23.01748 -22.82446 -21.55133 -20.63773 -19.06987 -18.28064 -17.45661 -17.43391 -16.87865 -16.66557 -16.35773 -15.91357 -15.67366 -14.86370 -14.79830 -14.53339 -14.38961 -14.13930 -13.84812 -13.74828 -13.43057 -13.05190 -12.87671 -12.70382 -12.64591 -12.58592 -12.47217 -12.20650 -11.99737 -11.65015 -11.45893 -11.31653 -10.92077 -9.86713 -9.65264 -9.57000 -9.39416 -8.27220 -6.82693 0.21684 0.23868 1.39204 1.40504 1.56916 2.24401 2.48462 2.59502 3.11883 3.27002 3.57134 3.60720 3.75981 3.89315 3.96734 4.14016 4.20725 4.32199 4.42921 4.53782 4.59416 4.71523 4.82083 4.82492 5.02057 5.02466 5.09268 5.11394 5.17968 5.26889 5.33843 5.37418 5.47177 5.52843 5.67897 5.90923 6.01659 6.25741 6.31501 6.89833 7.57813 8.52208 8.69709 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.005765 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.290409 B = 4855.630799 C = 5825.681238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.087 0.913 4 C -0.104 4.104 5 C -0.075 4.075 6 C -0.108 4.108 7 C 0.074 3.926 8 F -0.139 7.139 9 C -0.149 4.149 10 C -0.111 4.111 11 C -0.135 4.135 12 C -0.072 4.072 13 C 0.199 3.801 14 H 0.052 0.948 15 N -0.744 5.744 16 C 0.548 3.452 17 O -0.618 6.618 18 C -0.573 4.573 19 H 0.083 0.917 20 C 0.034 3.966 21 N -0.818 5.818 22 Si 0.990 3.010 23 H -0.249 1.249 24 H -0.270 1.270 25 H -0.270 1.270 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.393 0.607 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 5.413 -13.159 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.055 3.945 8 F -0.117 7.117 9 C -0.168 4.168 10 C -0.129 4.129 11 C -0.154 4.154 12 C -0.074 4.074 13 C 0.094 3.906 14 H 0.070 0.930 15 N -0.397 5.397 16 C 0.352 3.648 17 O -0.505 6.505 18 C -0.609 4.609 19 H 0.101 0.899 20 C -0.181 4.181 21 N -0.447 5.447 22 Si 0.810 3.190 23 H -0.172 1.172 24 H -0.195 1.195 25 H -0.196 1.196 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.132 0.868 36 H 0.227 0.773 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.136 4.392 -13.048 14.375 hybrid contribution 0.035 0.280 1.117 1.152 sum 4.171 4.672 -11.931 13.474 Atomic orbital electron populations 1.21749 0.93750 1.01673 1.02419 1.21367 0.96697 0.99904 0.92703 0.89482 1.21584 0.94130 1.00609 0.97808 1.20481 0.95522 1.03179 0.91969 1.19878 0.91850 1.02516 0.96703 1.17704 0.89973 1.05044 0.81807 1.91443 1.79714 1.94099 1.46463 1.21238 1.01687 1.02886 0.90960 1.21098 0.93642 0.99635 0.98521 1.21964 0.95528 0.97960 0.99921 1.20191 0.97093 0.98256 0.91844 1.19468 0.88947 0.95445 0.86787 0.92986 1.45905 1.77138 1.10173 1.06476 1.18397 0.76167 0.87159 0.83065 1.90563 1.56932 1.16888 1.86140 1.21431 1.51856 0.95505 0.92131 0.89927 1.26830 0.91961 0.95823 1.03533 1.70177 1.36731 1.11708 1.26132 0.85075 0.78318 0.79246 0.76329 1.17236 1.19478 1.19551 0.93750 0.89639 0.93605 0.92292 0.87545 0.89360 0.88787 0.82402 0.84512 0.86820 0.77319 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.10 71.98 0.66 -2.84 16 2 C -0.09 -2.36 2.24 -10.77 -0.02 -2.38 16 3 H 0.09 2.14 8.10 -2.38 -0.02 2.12 16 4 C -0.10 -2.26 5.29 30.62 0.16 -2.10 16 5 C -0.07 -1.72 5.34 29.74 0.16 -1.56 16 6 C -0.11 -3.38 5.74 -19.82 -0.11 -3.50 16 7 C 0.07 2.24 7.21 22.47 0.16 2.40 16 8 F -0.14 -3.82 16.47 44.97 0.74 -3.08 16 9 C -0.15 -4.47 10.02 22.25 0.22 -4.25 16 10 C -0.11 -3.95 10.05 22.19 0.22 -3.73 16 11 C -0.14 -5.86 8.99 22.36 0.20 -5.66 16 12 C -0.07 -2.75 5.55 -19.86 -0.11 -2.86 16 13 C 0.20 7.62 1.97 44.14 0.09 7.71 16 14 H 0.05 2.38 7.56 -2.38 -0.02 2.36 16 15 N -0.74 -32.36 4.48 -450.88 -2.02 -34.38 16 16 C 0.55 30.37 6.25 86.36 0.54 30.91 16 17 O -0.62 -39.34 12.77 -4.31 -0.06 -39.40 16 18 C -0.57 -31.66 9.54 24.83 0.24 -31.42 16 19 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 20 C 0.03 1.86 5.50 85.30 0.47 2.32 16 21 N -0.82 -49.03 11.83 21.84 0.26 -48.77 16 22 Si 0.99 40.57 29.56 68.60 2.03 42.60 16 23 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.31 7.89 -2.38 -0.02 1.29 16 29 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.11 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.09 1.82 7.85 -2.39 -0.02 1.80 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.11 6.10 4.37 -2.91 -0.01 6.09 16 36 H 0.39 15.04 8.57 -92.71 -0.79 14.24 16 37 H 0.27 14.88 8.29 -92.70 -0.77 14.11 16 Total: -1.00 -71.14 306.46 4.13 -67.02 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.30 Total: 32.96 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 2.87 Total: -16.95 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.76 Total: -83.15 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.06 Total: -39.40 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.74 Total: -3.08 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -71.14 4.13 -67.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153957859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.615 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds