Wall clock time and date at job start Mon Mar 30 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.67872 * 2 1 4 4 C 1.53328 * 109.68153 * 120.51904 * 2 1 3 5 5 C 1.52736 * 108.36410 * 189.63099 * 4 2 1 6 6 C 1.50633 * 110.58305 * 308.90718 * 5 4 2 7 7 C 1.39128 * 117.74855 * 197.54389 * 6 5 4 8 8 F 1.35103 * 119.75712 * 0.22693 * 7 6 5 9 9 C 1.38161 * 120.48851 * 180.21326 * 7 6 5 10 10 C 1.38221 * 119.74140 * 0.03352 * 9 7 6 11 11 C 1.37941 * 119.80279 * 359.89073 * 10 9 7 12 12 C 1.37627 * 122.57769 * 17.59355 * 6 5 4 13 13 C 1.50635 * 122.56617 * 359.59801 * 12 6 5 14 14 H 1.09001 * 109.25196 * 137.81312 * 13 12 6 15 15 N 1.46496 * 109.22281 * 257.26134 * 13 12 6 16 16 C 1.34779 * 119.99829 * 276.08881 * 15 13 12 17 17 O 1.21690 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.46378 * 120.00015 * 179.97438 * 16 15 13 19 19 H 1.07999 * 120.00085 * 359.97438 * 18 16 15 20 20 C 1.40049 * 119.99941 * 180.02562 * 18 16 15 21 21 N 1.30676 * 120.00158 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00026 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.46687 * 60.00268 * 22 20 18 24 24 H 1.48497 * 109.47254 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47302 * 300.00569 * 22 20 18 26 26 H 1.08999 * 109.47247 * 299.48043 * 1 2 3 27 27 H 1.09000 * 109.46863 * 59.48223 * 1 2 3 28 28 H 1.09008 * 109.46849 * 179.48157 * 1 2 3 29 29 H 1.08995 * 109.69041 * 69.91470 * 4 2 1 30 30 H 1.09001 * 109.68881 * 309.34789 * 4 2 1 31 31 H 1.08998 * 109.25953 * 69.19422 * 5 4 2 32 32 H 1.09008 * 109.25454 * 188.62384 * 5 4 2 33 33 H 1.08000 * 120.13076 * 180.02562 * 9 7 6 34 34 H 1.08001 * 120.09948 * 179.88174 * 10 9 7 35 35 H 1.08000 * 119.70365 * 180.02562 * 11 10 9 36 36 H 0.96998 * 120.00778 * 96.08989 * 15 13 12 37 37 H 0.97001 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0464 -0.7331 1.2437 5 6 3.5541 -0.5099 1.3425 6 6 4.2257 -0.8439 0.0362 7 6 5.6004 -1.0573 0.0506 8 9 6.2812 -0.9655 1.2139 9 6 6.2746 -1.3627 -1.1161 10 6 5.5780 -1.4562 -2.3062 11 6 4.2147 -1.2463 -2.3210 12 6 3.5334 -0.9415 -1.1492 13 6 2.0445 -0.7312 -1.2384 14 1 1.8175 -0.1394 -2.1252 15 7 1.3790 -2.0321 -1.3424 16 6 1.2596 -2.6339 -2.5425 17 8 1.7050 -2.0968 -3.5395 18 6 0.5951 -3.9340 -2.6465 19 1 0.2009 -4.4113 -1.7615 20 6 0.4716 -4.5595 -3.8934 21 7 0.9499 -3.9828 -4.9640 22 14 -0.3757 -6.2190 -4.0260 23 1 -1.7754 -6.1000 -3.5440 24 1 -0.3757 -6.6630 -5.4430 25 1 0.3506 -7.2134 -3.1961 26 1 -0.3634 0.5057 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 -0.3633 -1.0277 -0.0093 29 1 1.8383 -1.7993 1.1544 30 1 1.5574 -0.3363 2.1334 31 1 3.7476 0.5340 1.5895 32 1 3.9610 -1.1460 2.1288 33 1 7.3418 -1.5276 -1.0982 34 1 6.0995 -1.6927 -3.2219 35 1 3.6719 -1.3201 -3.2517 36 1 1.0242 -2.4605 -0.5478 37 1 0.8647 -4.4163 -5.8276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153957954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:39 Heat of formation + Delta-G solvation = -76.682380 kcal Electronic energy + Delta-G solvation = -21920.971738 eV Core-core repulsion = 18576.567894 eV Total energy + Delta-G solvation = -3344.403844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.61476 -39.96448 -37.25208 -36.12600 -33.09495 -32.31133 -31.26350 -30.26647 -28.52393 -26.64174 -25.42589 -23.21796 -21.63329 -21.53568 -20.33197 -18.41929 -17.48822 -16.89233 -15.99561 -15.51643 -15.39792 -15.29760 -14.65827 -14.50449 -14.08188 -13.69994 -13.56034 -13.27559 -12.96032 -12.56930 -12.37643 -12.22073 -11.74972 -11.57537 -11.43749 -11.25947 -11.18395 -11.07531 -10.95435 -10.55955 -10.48601 -10.22652 -10.18297 -9.94380 -8.87380 -8.48257 -8.16898 -7.62456 -7.53719 -6.21537 -4.66770 1.58020 1.60043 3.13811 3.19253 3.20664 3.94703 4.11011 4.49270 4.59390 4.76013 4.86857 4.94643 5.08225 5.16149 5.29920 5.42647 5.55022 5.64566 5.68451 5.77283 5.90602 5.92943 5.97140 6.04539 6.11047 6.15426 6.33882 6.39732 6.42118 6.52490 6.62949 6.65065 6.91240 7.07338 7.38767 7.41129 7.89371 8.05552 8.29615 9.00080 9.49248 10.56256 10.74759 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.006019 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.295572 B = 4650.843801 C = 5416.445226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.075 4.075 6 C -0.108 4.108 7 C 0.074 3.926 8 F -0.149 7.149 9 C -0.158 4.158 10 C -0.106 4.106 11 C -0.099 4.099 12 C -0.054 4.054 13 C 0.197 3.803 14 H 0.087 0.913 15 N -0.752 5.752 16 C 0.558 3.442 17 O -0.578 6.578 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.090 3.910 21 N -0.766 5.766 22 Si 0.905 3.095 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.269 1.269 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.380 0.620 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 6.082 9.950 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.055 3.945 8 F -0.127 7.127 9 C -0.177 4.177 10 C -0.124 4.124 11 C -0.117 4.117 12 C -0.056 4.056 13 C 0.091 3.909 14 H 0.105 0.895 15 N -0.407 5.407 16 C 0.363 3.637 17 O -0.461 6.461 18 C -0.582 4.582 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.395 5.395 22 Si 0.730 3.270 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.194 1.194 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.213 0.787 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.391 6.469 9.038 11.951 hybrid contribution -0.206 -1.192 0.491 1.305 sum 4.185 5.278 9.529 11.669 Atomic orbital electron populations 1.21743 0.94326 1.02702 1.01049 1.21416 0.96373 0.99265 0.94653 0.90612 1.21614 0.94305 1.01372 0.97756 1.20343 0.95541 1.01566 0.93757 1.19601 0.91458 1.03625 0.96231 1.17647 0.89924 1.05471 0.81416 1.91418 1.79970 1.94198 1.47155 1.20969 1.00267 1.04465 0.92045 1.20975 0.94674 0.99620 0.97095 1.21975 0.93906 0.95462 1.00356 1.20165 0.96991 0.97136 0.91330 1.19343 0.85968 0.87915 0.97690 0.89464 1.46287 1.63263 1.20215 1.10935 1.18162 0.79399 0.85600 0.80539 1.90513 1.53099 1.66738 1.35752 1.20836 1.39827 1.03304 0.94193 0.91649 1.25658 0.93847 0.98178 0.95305 1.69991 1.34409 1.36214 0.98893 0.86478 0.80314 0.82531 0.77700 1.19302 1.20573 1.19362 0.93214 0.92553 0.91749 0.91218 0.91436 0.90841 0.90964 0.85601 0.85539 0.82744 0.78667 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.95 37.16 0.33 -1.55 16 2 C -0.10 -1.38 2.53 -90.58 -0.23 -1.61 16 3 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 4 C -0.11 -1.45 5.24 -26.70 -0.14 -1.58 16 5 C -0.08 -1.01 5.34 -28.05 -0.15 -1.16 16 6 C -0.11 -1.77 5.74 -104.55 -0.60 -2.37 16 7 C 0.07 1.22 7.21 -39.28 -0.28 0.93 16 8 F -0.15 -2.33 16.47 2.25 0.04 -2.29 16 9 C -0.16 -2.48 10.02 -39.62 -0.40 -2.88 16 10 C -0.11 -1.79 10.05 -39.70 -0.40 -2.18 16 11 C -0.10 -1.95 9.10 -39.44 -0.36 -2.30 16 12 C -0.05 -1.00 5.29 -104.62 -0.55 -1.55 16 13 C 0.20 3.62 2.07 -69.25 -0.14 3.47 16 14 H 0.09 1.79 7.56 -51.93 -0.39 1.40 16 15 N -0.75 -15.76 4.15 -56.51 -0.23 -16.00 16 16 C 0.56 14.84 7.49 -12.98 -0.10 14.74 16 17 O -0.58 -17.03 12.23 5.20 0.06 -16.97 16 18 C -0.54 -14.83 9.54 -35.63 -0.34 -15.17 16 19 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 20 C 0.09 2.44 5.50 -17.36 -0.10 2.34 16 21 N -0.77 -22.15 11.83 55.55 0.66 -21.49 16 22 Si 0.90 19.80 29.56 -169.99 -5.02 14.78 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.93 6.84 -51.92 -0.36 0.57 16 29 H 0.07 0.96 6.77 -51.93 -0.35 0.61 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.94 7.85 -51.92 -0.41 0.53 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.16 3.54 5.78 -52.49 -0.30 3.24 16 36 H 0.38 7.24 6.49 -40.82 -0.26 6.97 16 37 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -30.80 303.83 -7.95 -38.76 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.58 Total: 9.52 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.45 Total: -10.89 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.42 Total: -37.49 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.06 Total: -16.97 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.80 -7.95 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153957954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.923 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds