Wall clock time and date at job start Mon Mar 30 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.67872 * 2 1 4 4 C 1.53328 * 109.68153 * 120.51904 * 2 1 3 5 5 C 1.52736 * 108.36410 * 189.63099 * 4 2 1 6 6 C 1.50633 * 110.58305 * 308.90718 * 5 4 2 7 7 C 1.39128 * 117.74855 * 197.54389 * 6 5 4 8 8 F 1.35103 * 119.75712 * 0.22693 * 7 6 5 9 9 C 1.38161 * 120.48851 * 180.21326 * 7 6 5 10 10 C 1.38221 * 119.74140 * 0.03352 * 9 7 6 11 11 C 1.37941 * 119.80279 * 359.89073 * 10 9 7 12 12 C 1.37627 * 122.57769 * 17.59355 * 6 5 4 13 13 C 1.50635 * 122.56617 * 359.59801 * 12 6 5 14 14 H 1.09001 * 109.25196 * 137.81312 * 13 12 6 15 15 N 1.46496 * 109.22281 * 257.26134 * 13 12 6 16 16 C 1.34779 * 119.99829 * 276.08881 * 15 13 12 17 17 O 1.21690 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.46378 * 120.00015 * 179.97438 * 16 15 13 19 19 H 1.07999 * 120.00085 * 359.97438 * 18 16 15 20 20 C 1.40049 * 119.99941 * 180.02562 * 18 16 15 21 21 N 1.30676 * 120.00158 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00026 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.46687 * 60.00268 * 22 20 18 24 24 H 1.48497 * 109.47254 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47302 * 300.00569 * 22 20 18 26 26 H 1.08999 * 109.47247 * 299.48043 * 1 2 3 27 27 H 1.09000 * 109.46863 * 59.48223 * 1 2 3 28 28 H 1.09008 * 109.46849 * 179.48157 * 1 2 3 29 29 H 1.08995 * 109.69041 * 69.91470 * 4 2 1 30 30 H 1.09001 * 109.68881 * 309.34789 * 4 2 1 31 31 H 1.08998 * 109.25953 * 69.19422 * 5 4 2 32 32 H 1.09008 * 109.25454 * 188.62384 * 5 4 2 33 33 H 1.08000 * 120.13076 * 180.02562 * 9 7 6 34 34 H 1.08001 * 120.09948 * 179.88174 * 10 9 7 35 35 H 1.08000 * 119.70365 * 180.02562 * 11 10 9 36 36 H 0.96998 * 120.00778 * 96.08989 * 15 13 12 37 37 H 0.97001 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0464 -0.7331 1.2437 5 6 3.5541 -0.5099 1.3425 6 6 4.2257 -0.8439 0.0362 7 6 5.6004 -1.0573 0.0506 8 9 6.2812 -0.9655 1.2139 9 6 6.2746 -1.3627 -1.1161 10 6 5.5780 -1.4562 -2.3062 11 6 4.2147 -1.2463 -2.3210 12 6 3.5334 -0.9415 -1.1492 13 6 2.0445 -0.7312 -1.2384 14 1 1.8175 -0.1394 -2.1252 15 7 1.3790 -2.0321 -1.3424 16 6 1.2596 -2.6339 -2.5425 17 8 1.7050 -2.0968 -3.5395 18 6 0.5951 -3.9340 -2.6465 19 1 0.2009 -4.4113 -1.7615 20 6 0.4716 -4.5595 -3.8934 21 7 0.9499 -3.9828 -4.9640 22 14 -0.3757 -6.2190 -4.0260 23 1 -1.7754 -6.1000 -3.5440 24 1 -0.3757 -6.6630 -5.4430 25 1 0.3506 -7.2134 -3.1961 26 1 -0.3634 0.5057 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 -0.3633 -1.0277 -0.0093 29 1 1.8383 -1.7993 1.1544 30 1 1.5574 -0.3363 2.1334 31 1 3.7476 0.5340 1.5895 32 1 3.9610 -1.1460 2.1288 33 1 7.3418 -1.5276 -1.0982 34 1 6.0995 -1.6927 -3.2219 35 1 3.6719 -1.3201 -3.2517 36 1 1.0242 -2.4605 -0.5478 37 1 0.8647 -4.4163 -5.8276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153957954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:39 Heat of formation + Delta-G solvation = -94.840568 kcal Electronic energy + Delta-G solvation = -21921.759136 eV Core-core repulsion = 18576.567894 eV Total energy + Delta-G solvation = -3345.191242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.88121 -41.35559 -38.98402 -37.62247 -34.83667 -34.15712 -32.61437 -31.79949 -29.80864 -28.44285 -26.95640 -24.46048 -23.05330 -22.76586 -22.11629 -19.80948 -19.32958 -18.26573 -17.55778 -17.18020 -16.78947 -16.61531 -16.22786 -16.10716 -15.57984 -15.08012 -14.77777 -14.51407 -14.41211 -14.19316 -13.90917 -13.70236 -13.20152 -13.02231 -12.88204 -12.72195 -12.69139 -12.56682 -12.48220 -12.26107 -12.08163 -11.62351 -11.39726 -11.19437 -10.89256 -9.96727 -9.60787 -9.51170 -9.37687 -8.25074 -6.80710 0.20930 0.24509 1.39675 1.42261 1.53148 2.24845 2.50449 2.58388 3.21897 3.31619 3.56730 3.59774 3.78170 3.91246 3.95853 4.06937 4.22114 4.33542 4.40904 4.58860 4.65901 4.73681 4.75082 4.82378 5.01431 5.03465 5.13037 5.13302 5.17337 5.29623 5.34104 5.37196 5.48779 5.52904 5.68250 5.92575 6.02533 6.27006 6.32959 6.91097 7.60284 8.54879 8.72689 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.006019 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.295572 B = 4650.843801 C = 5416.445226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.092 0.908 4 C -0.107 4.107 5 C -0.075 4.075 6 C -0.105 4.105 7 C 0.072 3.928 8 F -0.140 7.140 9 C -0.149 4.149 10 C -0.109 4.109 11 C -0.129 4.129 12 C -0.071 4.071 13 C 0.197 3.803 14 H 0.050 0.950 15 N -0.738 5.738 16 C 0.546 3.454 17 O -0.616 6.616 18 C -0.576 4.576 19 H 0.081 0.919 20 C 0.034 3.966 21 N -0.818 5.818 22 Si 0.989 3.011 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.259 1.259 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.391 0.609 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 5.675 12.925 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.144 4.144 5 C -0.112 4.112 6 C -0.106 4.106 7 C 0.053 3.947 8 F -0.118 7.118 9 C -0.168 4.168 10 C -0.127 4.127 11 C -0.148 4.148 12 C -0.073 4.073 13 C 0.091 3.909 14 H 0.069 0.931 15 N -0.392 5.392 16 C 0.349 3.651 17 O -0.503 6.503 18 C -0.612 4.612 19 H 0.099 0.901 20 C -0.181 4.181 21 N -0.447 5.447 22 Si 0.809 3.191 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.183 1.183 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.226 0.774 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.562 6.083 12.070 14.265 hybrid contribution -0.176 -0.979 -0.405 1.074 sum 4.386 5.104 11.664 13.466 Atomic orbital electron populations 1.21725 0.93724 1.02068 1.01995 1.21408 0.96786 0.99607 0.93069 0.88944 1.21608 0.94162 1.00552 0.98069 1.20474 0.95578 1.03120 0.91984 1.19876 0.91798 1.02208 0.96725 1.17753 0.90020 1.05076 0.81863 1.91444 1.79711 1.94072 1.46601 1.21257 1.01741 1.02767 0.91040 1.21113 0.93594 0.99366 0.98637 1.21793 0.95325 0.98249 0.99444 1.20100 0.96811 0.98495 0.91850 1.19428 0.86419 0.86347 0.98661 0.93143 1.45919 1.62669 1.20953 1.09675 1.18421 0.79129 0.85955 0.81549 1.90494 1.54444 1.67730 1.37611 1.21373 1.40456 1.04108 0.95302 0.90124 1.26807 0.94111 1.02635 0.94536 1.70159 1.36219 1.38612 0.99732 0.85203 0.79358 0.76585 0.77979 1.17896 1.20002 1.18308 0.89780 0.94138 0.93096 0.92442 0.87827 0.88592 0.89733 0.82416 0.84069 0.87104 0.77383 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.95 71.98 0.64 -2.85 16 2 C -0.09 -2.41 2.53 -10.77 -0.03 -2.43 16 3 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 4 C -0.11 -2.38 5.24 30.62 0.16 -2.22 16 5 C -0.07 -1.76 5.34 29.74 0.16 -1.60 16 6 C -0.10 -3.28 5.74 -19.82 -0.11 -3.40 16 7 C 0.07 2.19 7.21 22.47 0.16 2.35 16 8 F -0.14 -3.90 16.47 44.97 0.74 -3.16 16 9 C -0.15 -4.42 10.02 22.25 0.22 -4.20 16 10 C -0.11 -3.75 10.05 22.20 0.22 -3.52 16 11 C -0.13 -5.41 9.10 22.36 0.20 -5.21 16 12 C -0.07 -2.67 5.29 -19.86 -0.11 -2.77 16 13 C 0.20 7.49 2.07 44.14 0.09 7.58 16 14 H 0.05 2.26 7.56 -2.39 -0.02 2.24 16 15 N -0.74 -32.06 4.15 -450.92 -1.87 -33.93 16 16 C 0.55 30.50 7.49 86.36 0.65 31.15 16 17 O -0.62 -39.01 12.23 -4.32 -0.05 -39.06 16 18 C -0.58 -32.20 9.54 24.83 0.24 -31.97 16 19 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 20 C 0.03 1.91 5.50 85.30 0.47 2.37 16 21 N -0.82 -49.29 11.83 21.84 0.26 -49.04 16 22 Si 0.99 40.96 29.56 68.60 2.03 42.99 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.42 6.84 -2.38 -0.02 1.40 16 29 H 0.06 1.44 6.77 -2.39 -0.02 1.43 16 30 H 0.10 1.65 8.13 -2.39 -0.02 1.64 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.84 7.85 -2.38 -0.02 1.82 16 33 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.11 5.63 5.78 -2.91 -0.02 5.62 16 36 H 0.39 15.06 6.49 -92.71 -0.60 14.46 16 37 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 Total: -1.00 -71.07 303.83 4.57 -66.50 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.50 Total: 32.41 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 2.97 Total: -16.70 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.62 Total: -82.97 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.05 Total: -39.06 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.74 Total: -3.16 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -71.07 4.57 -66.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153957954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.340 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds