Wall clock time and date at job start Mon Mar 30 2020 01:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00604 * 2 1 4 4 C 1.52993 * 109.47120 * 124.99701 * 3 2 1 5 5 N 1.46504 * 109.46749 * 180.02562 * 4 3 2 6 6 C 1.40013 * 120.00009 * 179.97438 * 5 4 3 7 7 C 1.38645 * 120.09492 * 359.72599 * 6 5 4 8 8 C 1.38286 * 120.00037 * 179.69564 * 7 6 5 9 9 C 1.38272 * 120.20491 * 0.60653 * 8 7 6 10 10 C 1.38248 * 120.19523 * 359.66868 * 9 8 7 11 11 C 1.38734 * 119.99273 * 0.02651 * 10 9 8 12 12 S 1.76200 * 120.09844 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00177 * 354.28435 * 12 11 10 14 14 H 1.09008 * 109.46986 * 52.12574 * 13 12 11 15 15 C 1.52995 * 109.47137 * 172.12114 * 13 12 11 16 16 C 1.50700 * 109.47422 * 292.12611 * 13 12 11 17 17 H 1.08005 * 119.99647 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00217 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00343 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99847 * 359.97438 * 18 16 13 21 21 H 1.48508 * 109.47071 * 90.00177 * 20 18 16 22 22 H 1.48501 * 109.47091 * 209.99994 * 20 18 16 23 23 H 1.48500 * 109.47385 * 330.00303 * 20 18 16 24 24 H 1.07997 * 120.00640 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99843 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99843 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46313 * 4.99550 * 3 2 1 28 28 H 1.08999 * 109.46846 * 244.99912 * 3 2 1 29 29 H 1.08999 * 109.47434 * 299.99851 * 4 3 2 30 30 H 1.08999 * 109.47696 * 60.00216 * 4 3 2 31 31 H 0.96997 * 120.00408 * 0.02562 * 5 4 3 32 32 H 1.08001 * 120.00068 * 359.97438 * 7 6 5 33 33 H 1.08008 * 119.89917 * 180.31652 * 8 7 6 34 34 H 1.07998 * 119.90319 * 179.70057 * 9 8 7 35 35 H 1.08002 * 120.00091 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47430 * 186.07306 * 15 13 12 37 37 H 1.08998 * 109.47378 * 306.07594 * 15 13 12 38 38 H 1.09003 * 109.47260 * 66.07621 * 15 13 12 39 39 H 0.96995 * 120.00368 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3329 1.1816 5 7 3.7672 2.6019 1.1819 6 6 4.7190 2.8607 2.1755 7 6 4.9662 1.9199 3.1634 8 6 5.9113 2.1749 4.1402 9 6 6.6033 3.3720 4.1430 10 6 6.3593 4.3184 3.1652 11 6 5.4175 4.0685 2.1777 12 16 5.1039 5.2730 0.9306 13 6 6.1049 6.6871 1.4680 14 1 7.1291 6.3599 1.6476 15 6 6.0964 7.7614 0.3787 16 6 5.5292 7.2560 2.7392 17 1 4.6488 6.8115 3.1795 18 6 6.1263 8.3438 3.3401 19 7 5.6236 8.8406 4.4492 20 14 7.6494 9.1120 2.5790 21 1 7.2434 10.1754 1.6252 22 1 8.4933 9.7024 3.6488 23 1 8.4222 8.0690 1.8578 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4024 -0.9314 29 1 2.4772 1.2356 2.1130 30 1 3.7399 0.5064 1.0922 31 1 3.5920 3.2631 0.4942 32 1 4.4239 0.9859 3.1675 33 1 6.1062 1.4386 4.9061 34 1 7.3368 3.5680 4.9110 35 1 6.9019 5.2522 3.1702 36 1 6.7825 8.5627 0.6532 37 1 6.4112 7.3218 -0.5677 38 1 5.0893 8.1652 0.2746 39 1 6.0434 9.6061 4.8717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157183376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:56 Heat of formation + Delta-G solvation = 41.000341 kcal Electronic energy + Delta-G solvation = -18674.778841 eV Core-core repulsion = 15901.691279 eV Total energy + Delta-G solvation = -2773.087562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.86257 -36.49945 -34.39948 -33.94486 -31.21515 -30.52208 -29.95316 -27.27124 -25.28401 -23.62474 -22.21527 -21.49560 -20.63207 -19.98705 -17.23212 -16.81697 -16.12927 -15.78758 -15.64152 -15.10287 -14.55448 -14.18018 -13.70599 -13.59355 -13.44832 -13.06727 -12.88095 -12.61740 -12.37627 -12.01514 -11.94055 -11.40445 -11.36949 -11.21315 -11.13478 -10.78191 -10.56068 -10.25338 -9.79039 -9.70448 -9.58119 -9.42959 -8.98453 -8.89486 -8.69268 -7.34102 -6.29797 -6.17112 -4.22187 1.91905 2.02278 2.16379 2.59028 3.16864 3.26000 3.29780 3.46924 3.77293 4.26982 4.40532 4.70081 4.88780 5.00560 5.10101 5.14257 5.36154 5.47543 5.58611 5.63502 5.80698 5.83512 5.89692 6.04715 6.15045 6.22583 6.23766 6.27043 6.37306 6.51408 6.53990 6.63016 6.72921 6.92735 7.02713 7.19832 7.37453 7.40874 7.72653 8.04689 8.29346 8.86255 9.36991 10.92229 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.004591 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.556114 B = 6098.026635 C = 6791.676909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C -0.107 4.107 4 C 0.135 3.865 5 N -0.749 5.749 6 C 0.222 3.778 7 C -0.194 4.194 8 C -0.091 4.091 9 C -0.163 4.163 10 C -0.062 4.062 11 C -0.125 4.125 12 S -0.172 6.172 13 C 0.054 3.946 14 H 0.048 0.952 15 C -0.138 4.138 16 C -0.518 4.518 17 H 0.086 0.914 18 C 0.080 3.920 19 N -0.887 5.887 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.265 1.265 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.402 0.598 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -14.949 -6.897 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.168 4.168 3 C -0.144 4.144 4 C 0.010 3.990 5 N -0.382 5.382 6 C 0.115 3.885 7 C -0.219 4.219 8 C -0.112 4.112 9 C -0.185 4.185 10 C -0.086 4.086 11 C -0.242 4.242 12 S 0.072 5.928 13 C -0.075 4.075 14 H 0.066 0.934 15 C -0.197 4.197 16 C -0.557 4.557 17 H 0.104 0.896 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.191 1.191 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.137 -14.961 -7.784 17.365 hybrid contribution 1.427 0.927 0.700 1.840 sum -2.710 -14.034 -7.085 15.952 Atomic orbital electron populations 1.23890 0.95948 1.01968 1.01047 1.22799 0.95962 0.98053 0.99977 1.20934 0.98450 0.96187 0.98878 1.21145 0.93415 0.86632 0.97823 1.44676 1.42883 1.19310 1.31282 1.17292 0.89284 0.92446 0.89506 1.20360 1.04100 0.99591 0.97820 1.20771 0.95966 0.96884 0.97570 1.20824 1.02829 0.94620 1.00235 1.21336 0.95602 0.99150 0.92537 1.21039 1.03421 0.96704 1.03039 1.84132 1.66038 1.11063 1.31527 1.21357 0.96257 0.91461 0.98385 0.93383 1.21972 1.02176 0.98404 0.97143 1.21073 1.14612 1.14727 1.05256 0.89612 1.24964 0.96737 0.96167 0.94586 1.69864 1.40284 1.23998 1.18247 0.86970 0.83655 0.80119 0.78365 1.20244 1.22041 1.19063 0.88442 0.88458 0.87180 0.90732 0.90314 0.92519 0.92559 0.76218 0.86723 0.86896 0.86738 0.84187 0.92859 0.93997 0.91786 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 14.32 29.02 0.42 -1.11 16 2 C -0.15 -1.26 9.52 -36.02 -0.34 -1.60 16 3 C -0.11 -1.03 5.77 -27.89 -0.16 -1.19 16 4 C 0.13 1.56 4.90 -4.04 -0.02 1.54 16 5 N -0.75 -11.33 5.68 -58.45 -0.33 -11.66 16 6 C 0.22 3.97 6.66 -83.49 -0.56 3.41 16 7 C -0.19 -3.13 9.31 -39.41 -0.37 -3.50 16 8 C -0.09 -1.45 10.04 -39.55 -0.40 -1.85 16 9 C -0.16 -2.96 10.04 -39.57 -0.40 -3.35 16 10 C -0.06 -1.30 8.80 -39.39 -0.35 -1.64 16 11 C -0.13 -2.57 6.05 -38.92 -0.24 -2.81 16 12 S -0.17 -3.56 19.77 -107.50 -2.13 -5.68 16 13 C 0.05 1.25 1.60 -27.89 -0.04 1.20 16 14 H 0.05 1.13 6.05 -51.92 -0.31 0.82 16 15 C -0.14 -2.93 8.60 37.16 0.32 -2.61 16 16 C -0.52 -14.01 7.48 -34.44 -0.26 -14.26 16 17 H 0.09 2.62 7.96 -52.48 -0.42 2.20 16 18 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 19 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 20 Si 0.88 20.88 24.31 -169.99 -4.13 16.75 16 21 H -0.28 -6.39 6.92 56.52 0.39 -5.99 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 24 H 0.10 0.65 8.06 -52.49 -0.42 0.22 16 25 H 0.10 0.77 7.84 -52.48 -0.41 0.36 16 26 H 0.11 0.81 8.06 -52.48 -0.42 0.38 16 27 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 30 H 0.06 0.61 7.97 -51.93 -0.41 0.20 16 31 H 0.40 6.17 7.02 -40.82 -0.29 5.88 16 32 H 0.11 1.55 6.74 -52.49 -0.35 1.20 16 33 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.14 3.19 5.09 -52.49 -0.27 2.92 16 36 H 0.05 1.15 3.46 -51.93 -0.18 0.97 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -29.22 325.64 -9.00 -38.22 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.60 Total: 8.62 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -2.49 Total: -25.65 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.44 Total: -37.16 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.13 Total: 16.75 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.13 Total: -5.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.22 -9.00 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157183376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.218 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds