Wall clock time and date at job start Mon Mar 30 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00604 * 2 1 4 4 C 1.52993 * 109.47120 * 124.99701 * 3 2 1 5 5 N 1.46504 * 109.46749 * 180.02562 * 4 3 2 6 6 C 1.40013 * 120.00009 * 179.97438 * 5 4 3 7 7 C 1.38645 * 120.09492 * 359.72599 * 6 5 4 8 8 C 1.38286 * 120.00037 * 179.69564 * 7 6 5 9 9 C 1.38272 * 120.20491 * 0.60653 * 8 7 6 10 10 C 1.38248 * 120.19523 * 359.66868 * 9 8 7 11 11 C 1.38734 * 119.99273 * 0.02651 * 10 9 8 12 12 S 1.76200 * 120.09844 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00177 * 354.28435 * 12 11 10 14 14 H 1.09008 * 109.46986 * 52.12574 * 13 12 11 15 15 C 1.52995 * 109.47137 * 172.12114 * 13 12 11 16 16 C 1.50700 * 109.47422 * 292.12611 * 13 12 11 17 17 H 1.08005 * 119.99647 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00217 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00343 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99847 * 359.97438 * 18 16 13 21 21 H 1.48508 * 109.47071 * 90.00177 * 20 18 16 22 22 H 1.48501 * 109.47091 * 209.99994 * 20 18 16 23 23 H 1.48500 * 109.47385 * 330.00303 * 20 18 16 24 24 H 1.07997 * 120.00640 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99843 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99843 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46313 * 4.99550 * 3 2 1 28 28 H 1.08999 * 109.46846 * 244.99912 * 3 2 1 29 29 H 1.08999 * 109.47434 * 299.99851 * 4 3 2 30 30 H 1.08999 * 109.47696 * 60.00216 * 4 3 2 31 31 H 0.96997 * 120.00408 * 0.02562 * 5 4 3 32 32 H 1.08001 * 120.00068 * 359.97438 * 7 6 5 33 33 H 1.08008 * 119.89917 * 180.31652 * 8 7 6 34 34 H 1.07998 * 119.90319 * 179.70057 * 9 8 7 35 35 H 1.08002 * 120.00091 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47430 * 186.07306 * 15 13 12 37 37 H 1.08998 * 109.47378 * 306.07594 * 15 13 12 38 38 H 1.09003 * 109.47260 * 66.07621 * 15 13 12 39 39 H 0.96995 * 120.00368 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3329 1.1816 5 7 3.7672 2.6019 1.1819 6 6 4.7190 2.8607 2.1755 7 6 4.9662 1.9199 3.1634 8 6 5.9113 2.1749 4.1402 9 6 6.6033 3.3720 4.1430 10 6 6.3593 4.3184 3.1652 11 6 5.4175 4.0685 2.1777 12 16 5.1039 5.2730 0.9306 13 6 6.1049 6.6871 1.4680 14 1 7.1291 6.3599 1.6476 15 6 6.0964 7.7614 0.3787 16 6 5.5292 7.2560 2.7392 17 1 4.6488 6.8115 3.1795 18 6 6.1263 8.3438 3.3401 19 7 5.6236 8.8406 4.4492 20 14 7.6494 9.1120 2.5790 21 1 7.2434 10.1754 1.6252 22 1 8.4933 9.7024 3.6488 23 1 8.4222 8.0690 1.8578 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4024 -0.9314 29 1 2.4772 1.2356 2.1130 30 1 3.7399 0.5064 1.0922 31 1 3.5920 3.2631 0.4942 32 1 4.4239 0.9859 3.1675 33 1 6.1062 1.4386 4.9061 34 1 7.3368 3.5680 4.9110 35 1 6.9019 5.2522 3.1702 36 1 6.7825 8.5627 0.6532 37 1 6.4112 7.3218 -0.5677 38 1 5.0893 8.1652 0.2746 39 1 6.0434 9.6061 4.8717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157183376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:55 Heat of formation + Delta-G solvation = 24.743604 kcal Electronic energy + Delta-G solvation = -18675.483786 eV Core-core repulsion = 15901.691279 eV Total energy + Delta-G solvation = -2773.792507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18872 -37.50385 -36.17162 -35.08342 -33.23278 -31.86621 -31.07280 -28.38857 -27.23831 -24.74020 -23.78655 -23.00507 -21.98877 -20.69243 -18.92661 -18.54779 -17.49846 -17.32188 -16.69765 -16.46003 -15.83817 -15.42406 -15.23869 -14.94928 -14.83539 -14.64381 -14.21579 -14.11733 -13.69448 -13.55185 -13.05717 -12.97762 -12.81939 -12.47712 -12.34884 -12.25833 -11.94933 -11.79220 -11.53907 -11.40811 -10.93729 -10.81062 -10.76712 -10.36316 -10.24138 -8.73311 -8.34118 -7.78542 -6.40926 0.49402 0.75394 0.99200 1.27334 1.33033 1.39127 1.42356 1.80524 2.26385 2.58362 2.97828 3.01333 3.94436 4.06290 4.14417 4.17764 4.28224 4.32955 4.45823 4.46491 4.54183 4.57143 4.61805 4.70317 4.82547 4.87034 4.95354 5.05160 5.10990 5.17006 5.28376 5.33046 5.39979 5.54907 5.74763 5.78721 5.88500 6.01704 6.12996 6.47246 6.62381 6.76775 7.21418 8.81778 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.004591 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.556114 B = 6098.026635 C = 6791.676909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C -0.101 4.101 4 C 0.133 3.867 5 N -0.748 5.748 6 C 0.218 3.782 7 C -0.192 4.192 8 C -0.077 4.077 9 C -0.179 4.179 10 C -0.088 4.088 11 C -0.162 4.162 12 S -0.159 6.159 13 C 0.048 3.952 14 H 0.045 0.955 15 C -0.135 4.135 16 C -0.510 4.510 17 H 0.036 0.964 18 C 0.026 3.974 19 N -0.938 5.938 20 Si 0.941 3.059 21 H -0.260 1.260 22 H -0.296 1.296 23 H -0.247 1.247 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.398 0.602 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -17.211 -8.056 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.139 4.139 4 C 0.009 3.991 5 N -0.379 5.379 6 C 0.110 3.890 7 C -0.216 4.216 8 C -0.098 4.098 9 C -0.201 4.201 10 C -0.112 4.112 11 C -0.279 4.279 12 S 0.084 5.916 13 C -0.081 4.081 14 H 0.063 0.937 15 C -0.194 4.194 16 C -0.549 4.549 17 H 0.054 0.946 18 C -0.174 4.174 19 N -0.577 5.577 20 Si 0.767 3.233 21 H -0.186 1.186 22 H -0.223 1.223 23 H -0.171 1.171 24 H 0.131 0.869 25 H 0.112 0.888 26 H 0.143 0.857 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.166 0.834 33 H 0.171 0.829 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.885 -17.260 -8.969 19.835 hybrid contribution 1.204 1.449 1.119 2.191 sum -2.681 -15.811 -7.849 17.855 Atomic orbital electron populations 1.24059 0.95996 1.02607 1.00150 1.22828 0.96104 0.97829 1.00723 1.20870 0.97987 0.96848 0.98178 1.21355 0.93749 0.85233 0.98744 1.44884 1.42268 1.20448 1.30303 1.17525 0.89240 0.91842 0.90441 1.20786 1.03840 1.00226 0.96777 1.21208 0.94341 0.96403 0.97846 1.21049 1.03844 0.95178 0.99981 1.21220 0.96591 0.99015 0.94391 1.21201 1.05093 0.97888 1.03671 1.83824 1.66037 1.10056 1.31646 1.21240 0.96276 0.93189 0.97385 0.93708 1.21905 1.02058 0.97671 0.97727 1.21050 1.12805 1.14269 1.06752 0.94589 1.25775 1.00003 0.96763 0.94887 1.70016 1.42431 1.25078 1.20214 0.85964 0.79727 0.79819 0.77781 1.18589 1.22300 1.17111 0.86921 0.88827 0.85742 0.91520 0.90086 0.92357 0.91069 0.76668 0.83409 0.82922 0.85491 0.87253 0.92993 0.90821 0.92256 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 67.79 0.97 -1.66 16 2 C -0.16 -2.25 9.52 25.66 0.24 -2.01 16 3 C -0.10 -1.76 5.77 29.85 0.17 -1.59 16 4 C 0.13 2.75 4.90 86.38 0.42 3.17 16 5 N -0.75 -21.67 5.68 -338.83 -1.93 -23.59 16 6 C 0.22 7.58 6.66 38.24 0.25 7.84 16 7 C -0.19 -5.68 9.31 22.38 0.21 -5.47 16 8 C -0.08 -2.27 10.04 22.29 0.22 -2.05 16 9 C -0.18 -6.41 10.04 22.28 0.22 -6.19 16 10 C -0.09 -3.80 8.80 22.39 0.20 -3.60 16 11 C -0.16 -6.73 6.05 22.70 0.14 -6.59 16 12 S -0.16 -6.66 19.77 -56.49 -1.12 -7.78 16 13 C 0.05 2.25 1.60 29.85 0.05 2.30 16 14 H 0.05 2.13 6.05 -2.39 -0.01 2.12 16 15 C -0.14 -5.57 8.60 71.98 0.62 -4.95 16 16 C -0.51 -28.74 7.48 25.60 0.19 -28.55 16 17 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 18 C 0.03 1.46 5.45 84.65 0.46 1.92 16 19 N -0.94 -57.83 13.96 21.44 0.30 -57.53 16 20 Si 0.94 43.39 24.31 68.60 1.67 45.06 16 21 H -0.26 -11.31 6.92 99.48 0.69 -10.62 16 22 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 23 H -0.25 -10.57 6.53 99.48 0.65 -9.92 16 24 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 25 H 0.09 1.34 7.84 -2.91 -0.02 1.32 16 26 H 0.12 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.07 1.26 7.79 -2.38 -0.02 1.24 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.22 7.94 -2.39 -0.02 1.20 16 30 H 0.07 1.30 7.97 -2.39 -0.02 1.28 16 31 H 0.40 11.97 7.02 -92.71 -0.65 11.31 16 32 H 0.15 3.36 6.74 -2.91 -0.02 3.34 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.11 5.28 5.09 -2.91 -0.01 5.26 16 36 H 0.05 2.14 3.46 -2.39 -0.01 2.13 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -65.94 325.64 3.61 -62.33 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.31 Total: 28.93 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 4.37 Total: -47.42 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.63 Total: -81.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.67 Total: 45.06 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.12 Total: -7.78 kcal Total: -65.94 3.61 -62.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157183376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.077 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds