Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.87293 * 2 1 4 4 C 1.54320 * 109.88262 * 121.02067 * 2 1 3 5 5 C 1.55148 * 102.94669 * 97.37896 * 4 2 1 6 6 H 1.09010 * 111.00490 * 277.38993 * 5 4 2 7 7 C 1.50690 * 111.00999 * 153.57493 * 5 4 2 8 8 C 1.38250 * 119.97617 * 119.99639 * 7 5 4 9 9 C 1.38200 * 120.02457 * 180.02562 * 8 7 5 10 10 C 1.38457 * 119.97403 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.02113 * 179.97438 * 10 9 8 12 12 C 1.38459 * 119.95103 * 0.02562 * 10 9 8 13 13 C 1.38191 * 119.97125 * 359.97438 * 12 10 9 14 14 C 1.54908 * 101.58417 * 35.49727 * 5 4 2 15 15 N 1.47025 * 110.00701 * 238.90586 * 2 1 3 16 16 C 1.34772 * 125.65176 * 59.42849 * 15 2 1 17 17 O 1.21686 * 120.00016 * 359.97438 * 16 15 2 18 18 C 1.46376 * 120.00048 * 180.02562 * 16 15 2 19 19 H 1.08003 * 119.99981 * 353.61326 * 18 16 15 20 20 C 1.40044 * 119.99970 * 173.61845 * 18 16 15 21 21 N 1.30670 * 120.00281 * 6.04204 * 20 18 16 22 22 Si 1.86807 * 120.00032 * 186.03738 * 20 18 16 23 23 H 1.48504 * 109.46645 * 94.98250 * 22 20 18 24 24 H 1.48490 * 109.47455 * 214.98597 * 22 20 18 25 25 H 1.48501 * 109.47162 * 334.98825 * 22 20 18 26 26 H 1.09003 * 109.46865 * 298.98697 * 1 2 3 27 27 H 1.09003 * 109.47120 * 58.98209 * 1 2 3 28 28 H 1.08995 * 109.47157 * 178.98400 * 1 2 3 29 29 H 1.08999 * 110.72081 * 339.01049 * 4 2 1 30 30 H 1.09005 * 110.86817 * 215.81585 * 4 2 1 31 31 H 1.07993 * 119.98636 * 0.27729 * 8 7 5 32 32 H 1.08005 * 120.01161 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.01136 * 179.97438 * 12 10 9 34 34 H 1.08010 * 119.98622 * 180.02562 * 13 12 10 35 35 H 1.09003 * 110.36498 * 81.82946 * 14 5 4 36 36 H 1.09004 * 110.37141 * 204.15560 * 14 5 4 37 37 H 0.97002 * 120.00072 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 6 2.3557 -2.1674 0.6944 6 1 1.4504 -2.7738 0.6621 7 6 3.4277 -2.8454 1.5079 8 6 3.1542 -4.0357 2.1558 9 6 4.1365 -4.6581 2.9025 10 6 5.3948 -4.0889 3.0020 11 9 6.3556 -4.6963 3.7322 12 6 5.6672 -2.8963 2.3536 13 6 4.6834 -2.2758 1.6075 14 6 2.8617 -1.8473 -0.7343 15 7 2.0330 -0.7135 -1.1830 16 6 1.7784 -0.3857 -2.4652 17 8 1.0766 0.5753 -2.7197 18 6 2.3452 -1.1862 -3.5517 19 1 3.0491 -1.9750 -3.3309 20 6 1.9749 -0.9292 -4.8776 21 7 1.2170 0.0980 -5.1570 22 14 2.5643 -2.0548 -6.2470 23 1 1.5257 -3.0784 -6.5279 24 1 2.8148 -1.2545 -7.4724 25 1 3.8210 -2.7266 -5.8291 26 1 -0.3633 0.4980 0.8990 27 1 -0.3633 0.5296 -0.8807 28 1 -0.3633 -1.0275 -0.0182 29 1 1.2909 -0.7887 2.0201 30 1 2.9636 -0.2805 1.6230 31 1 2.1738 -4.4813 2.0750 32 1 3.9225 -5.5877 3.4090 33 1 6.6482 -2.4513 2.4308 34 1 4.8958 -1.3456 1.1012 35 1 3.9134 -1.5619 -0.7091 36 1 2.7164 -2.7062 -1.3896 37 1 0.9602 0.2757 -6.0754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186805308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -63.448991 kcal Electronic energy + Delta-G solvation = -21091.178406 eV Core-core repulsion = 17747.348405 eV Total energy + Delta-G solvation = -3343.830001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.96173 -39.81961 -38.18441 -35.74753 -32.65860 -32.00357 -31.23686 -30.85333 -28.30237 -26.17249 -25.24895 -23.48222 -22.83280 -21.45684 -20.06731 -18.58210 -17.79469 -16.81839 -16.40304 -15.79861 -15.65294 -15.35828 -14.81442 -14.35203 -13.91067 -13.69066 -13.58059 -13.30776 -13.04907 -12.79856 -12.48148 -12.43755 -12.04150 -11.69685 -11.49933 -11.35352 -11.12138 -10.94691 -10.86396 -10.85032 -10.42030 -10.26581 -10.17358 -10.04708 -9.18624 -8.86671 -8.53767 -7.60518 -7.21635 -6.22255 -4.65782 1.06533 1.15434 3.12179 3.19781 3.23045 3.49430 4.05935 4.18319 4.43623 4.52608 4.63182 4.77122 4.84867 5.05014 5.12936 5.21778 5.31065 5.37510 5.66270 5.76702 5.78720 5.84722 5.98110 6.02082 6.03228 6.06125 6.17468 6.27944 6.31350 6.40658 6.45016 6.64729 6.75132 6.81887 7.00927 7.40294 7.42170 8.10331 8.40967 9.00537 9.48210 10.55859 10.74929 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.004568 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.201850 B = 6128.471291 C = 7100.169413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.117 4.117 5 C -0.069 4.069 6 H 0.090 0.910 7 C -0.068 4.068 8 C -0.088 4.088 9 C -0.153 4.153 10 C 0.085 3.915 11 F -0.145 7.145 12 C -0.151 4.151 13 C -0.084 4.084 14 C 0.129 3.871 15 N -0.640 5.640 16 C 0.573 3.427 17 O -0.572 6.572 18 C -0.541 4.541 19 H 0.069 0.931 20 C 0.088 3.912 21 N -0.767 5.767 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 -7.757 14.594 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.075 0.925 4 C -0.155 4.155 5 C -0.088 4.088 6 H 0.108 0.892 7 C -0.069 4.069 8 C -0.106 4.106 9 C -0.172 4.172 10 C 0.066 3.934 11 F -0.124 7.124 12 C -0.169 4.169 13 C -0.102 4.102 14 C 0.004 3.996 15 N -0.380 5.380 16 C 0.380 3.620 17 O -0.455 6.455 18 C -0.577 4.577 19 H 0.087 0.913 20 C -0.131 4.131 21 N -0.396 5.396 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.652 -7.082 14.220 16.553 hybrid contribution 0.553 -0.809 -0.476 1.090 sum 5.205 -7.892 13.744 16.682 Atomic orbital electron populations 1.22115 0.96080 1.01423 1.01850 1.21148 0.93955 0.95808 0.85485 0.92536 1.22793 1.01187 0.94163 0.97369 1.21424 0.96325 0.96038 0.95003 0.89187 1.19859 0.94862 0.94857 0.97335 1.20952 0.99103 0.94624 0.95931 1.21094 0.92188 1.01551 1.02341 1.17722 0.86438 0.93564 0.95704 1.91478 1.62736 1.82832 1.75355 1.21129 1.01039 0.95121 0.99639 1.20981 0.92021 1.00062 0.97155 1.21960 0.94410 0.91327 0.91892 1.48799 1.53934 1.30305 1.04988 1.17997 0.80682 0.84557 0.78794 1.90594 1.42510 1.30695 1.81662 1.20902 1.28248 1.18573 0.90017 0.91294 1.25703 0.93565 0.94470 0.99395 1.70021 1.26919 1.22985 1.19687 0.86387 0.79727 0.80480 0.80382 1.19777 1.20418 1.18851 0.93626 0.90702 0.93393 0.90785 0.91159 0.84995 0.85007 0.84901 0.84642 0.93218 0.91005 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.06 37.16 0.34 -2.54 16 2 C 0.14 2.62 3.49 -66.95 -0.23 2.38 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.12 -1.61 5.91 -24.90 -0.15 -1.76 16 5 C -0.07 -0.94 3.26 -89.63 -0.29 -1.23 16 6 H 0.09 1.20 7.96 -51.92 -0.41 0.79 16 7 C -0.07 -0.82 5.00 -104.62 -0.52 -1.34 16 8 C -0.09 -0.93 9.68 -39.59 -0.38 -1.31 16 9 C -0.15 -1.59 10.03 -39.51 -0.40 -1.98 16 10 C 0.08 0.97 7.30 -39.42 -0.29 0.68 16 11 F -0.15 -1.73 17.27 2.25 0.04 -1.70 16 12 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 13 C -0.08 -0.97 8.30 -39.60 -0.33 -1.30 16 14 C 0.13 2.27 5.89 -2.53 -0.01 2.26 16 15 N -0.64 -14.18 3.08 -164.65 -0.51 -14.69 16 16 C 0.57 16.09 7.56 -12.99 -0.10 15.99 16 17 O -0.57 -18.17 13.95 5.20 0.07 -18.10 16 18 C -0.54 -15.06 8.93 -35.63 -0.32 -15.38 16 19 H 0.07 1.78 6.75 -52.48 -0.35 1.42 16 20 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 21 N -0.77 -22.74 11.85 55.55 0.66 -22.08 16 22 Si 0.91 19.96 29.56 -169.99 -5.03 14.94 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.68 6.76 -51.93 -0.35 1.33 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 30 H 0.07 0.89 7.20 -51.93 -0.37 0.51 16 31 H 0.13 1.15 7.99 -52.49 -0.42 0.73 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.14 1.51 7.00 -52.48 -0.37 1.15 16 35 H 0.05 0.84 6.65 -51.93 -0.35 0.50 16 36 H 0.07 1.33 7.23 -51.93 -0.38 0.95 16 37 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -33.01 311.17 -7.91 -40.91 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.65 Total: 1.26 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.18 Total: -5.23 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.15 Total: -36.77 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.07 Total: -18.10 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.01 -7.91 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186805308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.534 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds