Wall clock time and date at job start Mon Mar 30 2020 01:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.87293 * 2 1 4 4 C 1.54320 * 109.88262 * 121.02067 * 2 1 3 5 5 C 1.55148 * 102.94669 * 97.37896 * 4 2 1 6 6 H 1.09010 * 111.00490 * 277.38993 * 5 4 2 7 7 C 1.50690 * 111.00999 * 153.57493 * 5 4 2 8 8 C 1.38250 * 119.97617 * 119.99639 * 7 5 4 9 9 C 1.38200 * 120.02457 * 180.02562 * 8 7 5 10 10 C 1.38457 * 119.97403 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.02113 * 179.97438 * 10 9 8 12 12 C 1.38459 * 119.95103 * 0.02562 * 10 9 8 13 13 C 1.38191 * 119.97125 * 359.97438 * 12 10 9 14 14 C 1.54908 * 101.58417 * 35.49727 * 5 4 2 15 15 N 1.47025 * 110.00701 * 238.90586 * 2 1 3 16 16 C 1.34772 * 125.65176 * 59.42849 * 15 2 1 17 17 O 1.21686 * 120.00016 * 359.97438 * 16 15 2 18 18 C 1.46376 * 120.00048 * 180.02562 * 16 15 2 19 19 H 1.08003 * 119.99981 * 353.61326 * 18 16 15 20 20 C 1.40044 * 119.99970 * 173.61845 * 18 16 15 21 21 N 1.30670 * 120.00281 * 6.04204 * 20 18 16 22 22 Si 1.86807 * 120.00032 * 186.03738 * 20 18 16 23 23 H 1.48504 * 109.46645 * 94.98250 * 22 20 18 24 24 H 1.48490 * 109.47455 * 214.98597 * 22 20 18 25 25 H 1.48501 * 109.47162 * 334.98825 * 22 20 18 26 26 H 1.09003 * 109.46865 * 298.98697 * 1 2 3 27 27 H 1.09003 * 109.47120 * 58.98209 * 1 2 3 28 28 H 1.08995 * 109.47157 * 178.98400 * 1 2 3 29 29 H 1.08999 * 110.72081 * 339.01049 * 4 2 1 30 30 H 1.09005 * 110.86817 * 215.81585 * 4 2 1 31 31 H 1.07993 * 119.98636 * 0.27729 * 8 7 5 32 32 H 1.08005 * 120.01161 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.01136 * 179.97438 * 12 10 9 34 34 H 1.08010 * 119.98622 * 180.02562 * 13 12 10 35 35 H 1.09003 * 110.36498 * 81.82946 * 14 5 4 36 36 H 1.09004 * 110.37141 * 204.15560 * 14 5 4 37 37 H 0.97002 * 120.00072 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 6 2.3557 -2.1674 0.6944 6 1 1.4504 -2.7738 0.6621 7 6 3.4277 -2.8454 1.5079 8 6 3.1542 -4.0357 2.1558 9 6 4.1365 -4.6581 2.9025 10 6 5.3948 -4.0889 3.0020 11 9 6.3556 -4.6963 3.7322 12 6 5.6672 -2.8963 2.3536 13 6 4.6834 -2.2758 1.6075 14 6 2.8617 -1.8473 -0.7343 15 7 2.0330 -0.7135 -1.1830 16 6 1.7784 -0.3857 -2.4652 17 8 1.0766 0.5753 -2.7197 18 6 2.3452 -1.1862 -3.5517 19 1 3.0491 -1.9750 -3.3309 20 6 1.9749 -0.9292 -4.8776 21 7 1.2170 0.0980 -5.1570 22 14 2.5643 -2.0548 -6.2470 23 1 1.5257 -3.0784 -6.5279 24 1 2.8148 -1.2545 -7.4724 25 1 3.8210 -2.7266 -5.8291 26 1 -0.3633 0.4980 0.8990 27 1 -0.3633 0.5296 -0.8807 28 1 -0.3633 -1.0275 -0.0182 29 1 1.2909 -0.7887 2.0201 30 1 2.9636 -0.2805 1.6230 31 1 2.1738 -4.4813 2.0750 32 1 3.9225 -5.5877 3.4090 33 1 6.6482 -2.4513 2.4308 34 1 4.8958 -1.3456 1.1012 35 1 3.9134 -1.5619 -0.7091 36 1 2.7164 -2.7062 -1.3896 37 1 0.9602 0.2757 -6.0754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186805308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:43 Heat of formation + Delta-G solvation = -83.186786 kcal Electronic energy + Delta-G solvation = -21092.034301 eV Core-core repulsion = 17747.348405 eV Total energy + Delta-G solvation = -3344.685896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.83910 -41.00505 -39.55073 -37.58593 -34.67307 -33.35551 -32.50248 -32.04402 -29.46353 -28.23010 -26.64545 -24.58342 -23.85274 -22.94475 -21.27793 -20.27077 -18.75490 -18.44406 -17.64220 -17.45489 -16.72447 -16.52900 -16.15081 -15.78271 -15.51068 -14.85114 -14.69350 -14.45868 -14.35105 -14.22148 -13.88336 -13.73675 -13.44747 -13.18652 -13.02423 -12.85082 -12.67634 -12.64959 -12.37018 -11.98900 -11.97667 -11.88972 -11.61029 -11.39188 -10.93066 -9.99622 -9.80106 -9.42582 -9.05269 -8.29476 -6.83307 0.18851 0.34613 1.38806 1.39555 1.55252 2.22883 2.46705 2.63301 2.84832 3.34904 3.57181 3.65411 3.78350 3.88417 3.98086 4.03388 4.23150 4.31464 4.40569 4.47003 4.53479 4.61414 4.78875 4.92093 4.95441 5.00058 5.07251 5.11398 5.20190 5.22560 5.26080 5.33385 5.35826 5.45753 5.68051 5.70791 5.98454 6.08358 6.47718 6.88028 7.51603 8.48904 8.68392 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.004568 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.201850 B = 6128.471291 C = 7100.169413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.037 0.963 4 C -0.101 4.101 5 C -0.050 4.050 6 H 0.099 0.901 7 C -0.077 4.077 8 C -0.083 4.083 9 C -0.151 4.151 10 C 0.073 3.927 11 F -0.150 7.150 12 C -0.154 4.154 13 C -0.090 4.090 14 C 0.122 3.878 15 N -0.647 5.647 16 C 0.556 3.444 17 O -0.625 6.625 18 C -0.567 4.567 19 H 0.084 0.916 20 C 0.032 3.968 21 N -0.821 5.821 22 Si 0.993 3.007 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.249 1.249 26 H 0.083 0.917 27 H 0.023 0.977 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -10.121 16.123 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 H 0.055 0.945 4 C -0.138 4.138 5 C -0.069 4.069 6 H 0.117 0.883 7 C -0.077 4.077 8 C -0.101 4.101 9 C -0.169 4.169 10 C 0.054 3.946 11 F -0.129 7.129 12 C -0.172 4.172 13 C -0.108 4.108 14 C -0.001 4.001 15 N -0.384 5.384 16 C 0.362 3.638 17 O -0.512 6.512 18 C -0.604 4.604 19 H 0.102 0.898 20 C -0.184 4.184 21 N -0.451 5.451 22 Si 0.812 3.188 23 H -0.187 1.187 24 H -0.197 1.197 25 H -0.173 1.173 26 H 0.102 0.898 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.580 -9.476 15.815 19.263 hybrid contribution 0.304 -0.057 -0.853 0.908 sum 5.884 -9.533 14.962 18.691 Atomic orbital electron populations 1.22017 0.95964 1.01389 1.01242 1.21416 0.94199 0.95421 0.86398 0.94508 1.22732 1.02517 0.93289 0.95311 1.21231 0.97118 0.96297 0.92258 0.88307 1.19695 0.94361 0.95648 0.98031 1.21157 1.00102 0.93798 0.95024 1.21341 0.91532 1.02143 1.01903 1.17962 0.86870 0.93857 0.95872 1.91468 1.63030 1.82918 1.75507 1.21268 1.01571 0.95088 0.99292 1.21018 0.92183 1.00227 0.97392 1.22169 0.94258 0.89326 0.94375 1.48572 1.53768 1.31591 1.04484 1.18304 0.80385 0.84108 0.81023 1.90544 1.44581 1.32675 1.83376 1.21388 1.28907 1.19118 0.90966 0.89837 1.26921 0.93126 0.95935 1.02372 1.70189 1.28711 1.25457 1.20747 0.85082 0.79690 0.77913 0.76113 1.18703 1.19710 1.17269 0.89823 0.95799 0.92851 0.87820 0.89694 0.82857 0.82902 0.83642 0.84724 0.92570 0.92126 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.06 71.98 0.65 -4.80 16 2 C 0.13 4.82 3.49 45.34 0.16 4.98 16 3 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.10 -2.51 5.91 31.78 0.19 -2.32 16 5 C -0.05 -1.24 3.26 -10.15 -0.03 -1.28 16 6 H 0.10 2.32 7.96 -2.38 -0.02 2.30 16 7 C -0.08 -1.60 5.00 -19.86 -0.10 -1.69 16 8 C -0.08 -1.44 9.68 22.26 0.22 -1.23 16 9 C -0.15 -2.61 10.03 22.31 0.22 -2.38 16 10 C 0.07 1.48 7.30 22.37 0.16 1.65 16 11 F -0.15 -3.26 17.27 44.97 0.78 -2.48 16 12 C -0.15 -3.00 10.03 22.31 0.22 -2.78 16 13 C -0.09 -1.87 8.30 22.26 0.18 -1.68 16 14 C 0.12 4.23 5.89 86.85 0.51 4.75 16 15 N -0.65 -29.24 3.08 -793.06 -2.45 -31.69 16 16 C 0.56 32.54 7.56 86.36 0.65 33.19 16 17 O -0.62 -42.07 13.95 -4.31 -0.06 -42.13 16 18 C -0.57 -32.40 8.93 24.83 0.22 -32.18 16 19 H 0.08 4.34 6.75 -2.91 -0.02 4.32 16 20 C 0.03 1.77 5.49 85.30 0.47 2.24 16 21 N -0.82 -50.57 11.85 21.83 0.26 -50.31 16 22 Si 0.99 41.20 29.56 68.60 2.03 43.23 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.02 1.10 6.76 -2.39 -0.02 1.08 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.10 2.04 7.83 -2.39 -0.02 2.03 16 30 H 0.08 1.90 7.20 -2.38 -0.02 1.88 16 31 H 0.15 2.00 7.99 -2.91 -0.02 1.98 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.13 2.76 7.00 -2.91 -0.02 2.74 16 35 H 0.06 1.87 6.65 -2.39 -0.02 1.85 16 36 H 0.06 2.22 7.23 -2.39 -0.02 2.20 16 37 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 Total: -1.00 -76.26 311.17 5.37 -70.89 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.08 Total: 16.05 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 3.73 Total: -3.54 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.19 Total: -82.00 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.06 Total: -42.13 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -76.26 5.37 -70.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186805308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.295 kcal (2) G-P(sol) polarization free energy of solvation -76.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds