Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.00244 * 2 1 4 4 C 1.54327 * 109.88317 * 121.10168 * 2 1 3 5 5 C 1.55156 * 102.94181 * 141.60927 * 4 2 1 6 6 H 1.08999 * 111.00338 * 82.57390 * 5 4 2 7 7 C 1.50708 * 110.99876 * 206.38340 * 5 4 2 8 8 C 1.38242 * 119.97293 * 59.73079 * 7 5 4 9 9 C 1.38199 * 120.02183 * 179.72281 * 8 7 5 10 10 C 1.38458 * 119.97395 * 0.56757 * 9 8 7 11 11 F 1.35102 * 120.02557 * 179.68016 * 10 9 8 12 12 C 1.38464 * 119.95075 * 359.70526 * 10 9 8 13 13 C 1.38198 * 119.97018 * 359.97438 * 12 10 9 14 14 C 1.54908 * 101.58197 * 324.49449 * 5 4 2 15 15 N 1.47031 * 109.88127 * 238.90681 * 2 1 3 16 16 C 1.34774 * 125.64691 * 61.59807 * 15 2 1 17 17 O 1.21691 * 120.00089 * 0.02562 * 16 15 2 18 18 C 1.46374 * 119.99760 * 179.97438 * 16 15 2 19 19 H 1.07997 * 120.00234 * 0.02562 * 18 16 15 20 20 C 1.40044 * 120.00021 * 179.97438 * 18 16 15 21 21 N 1.30677 * 120.00263 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00228 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47179 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47416 * 120.00102 * 22 20 18 25 25 H 1.48500 * 109.47289 * 240.00518 * 22 20 18 26 26 H 1.09000 * 109.46935 * 298.90477 * 1 2 3 27 27 H 1.09003 * 109.46781 * 58.90386 * 1 2 3 28 28 H 1.08995 * 109.47287 * 178.90065 * 1 2 3 29 29 H 1.09001 * 110.71763 * 259.97262 * 4 2 1 30 30 H 1.08997 * 110.71798 * 23.24430 * 4 2 1 31 31 H 1.07997 * 119.99197 * 359.97228 * 8 7 5 32 32 H 1.08002 * 120.01487 * 180.24963 * 9 8 7 33 33 H 1.07994 * 120.01224 * 180.02562 * 12 10 9 34 34 H 1.08000 * 119.98589 * 179.97438 * 13 12 10 35 35 H 1.09000 * 110.36459 * 155.84880 * 14 5 4 36 36 H 1.08998 * 110.36772 * 278.17049 * 14 5 4 37 37 H 0.96998 * 120.00675 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 6 3.2876 -1.5143 0.6922 6 1 4.1654 -0.8689 0.6603 7 6 3.5613 -2.7538 1.5047 8 6 2.5975 -3.7396 1.6065 9 6 2.8496 -4.8792 2.3466 10 6 4.0634 -5.0280 2.9958 11 9 4.3084 -6.1388 3.7248 12 6 5.0259 -4.0374 2.8977 13 6 4.7741 -2.9017 2.1516 14 6 2.8145 -1.8794 -0.7369 15 7 2.0300 -0.7141 -1.1840 16 6 1.8073 -0.3620 -2.4658 17 8 1.1411 0.6244 -2.7189 18 6 2.3675 -1.1656 -3.5534 19 1 2.9591 -2.0408 -3.3287 20 6 2.1356 -0.8002 -4.8852 21 7 1.4195 0.2585 -5.1571 22 14 2.8512 -1.8253 -6.2732 23 1 3.6177 -2.9628 -5.7042 24 1 1.7501 -2.3465 -7.1222 25 1 3.7544 -0.9819 -7.0967 26 1 -0.3633 0.4967 0.8997 27 1 -0.3633 0.5308 -0.8800 28 1 -0.3633 -1.0274 -0.0197 29 1 2.3530 -0.0462 2.0200 30 1 1.3052 -1.4460 1.6181 31 1 1.6488 -3.6210 1.1043 32 1 2.0980 -5.6511 2.4228 33 1 5.9732 -4.1527 3.4032 34 1 5.5244 -2.1287 2.0752 35 1 3.6716 -2.0338 -1.3924 36 1 2.1886 -2.7715 -0.7130 37 1 1.2591 0.5119 -6.0796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186805349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = -83.436942 kcal Electronic energy + Delta-G solvation = -21090.213435 eV Core-core repulsion = 17745.516691 eV Total energy + Delta-G solvation = -3344.696744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.83769 -40.98866 -39.54441 -37.57276 -34.67194 -33.40828 -32.48265 -32.04508 -29.55960 -28.22177 -26.60636 -24.49629 -23.88398 -22.92344 -21.20125 -20.40580 -18.64874 -18.41758 -17.79049 -17.43656 -16.71710 -16.53084 -16.36845 -15.76214 -15.22355 -14.83152 -14.78700 -14.55563 -14.36359 -14.26269 -13.75892 -13.58207 -13.45423 -13.27857 -13.18684 -12.85222 -12.65826 -12.56986 -12.28990 -12.01655 -11.95417 -11.91095 -11.62344 -11.44972 -10.94366 -9.99505 -9.80527 -9.42543 -9.05096 -8.28744 -6.83729 0.18898 0.34684 1.38493 1.38869 1.56240 2.22868 2.46725 2.63286 2.85126 3.34839 3.56852 3.66286 3.78911 3.87768 3.98970 4.03372 4.21721 4.32664 4.39886 4.45900 4.53800 4.59897 4.78860 4.87613 4.94752 5.01711 5.06332 5.11228 5.20497 5.22708 5.26919 5.33190 5.35020 5.44723 5.68239 5.70122 5.98475 6.08267 6.47627 6.88003 7.51748 8.49134 8.68718 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.004558 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.637418 B = 6140.977932 C = 7068.042448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.039 0.961 4 C -0.101 4.101 5 C -0.052 4.052 6 H 0.098 0.902 7 C -0.076 4.076 8 C -0.089 4.089 9 C -0.153 4.153 10 C 0.073 3.927 11 F -0.150 7.150 12 C -0.151 4.151 13 C -0.083 4.083 14 C 0.123 3.877 15 N -0.647 5.647 16 C 0.555 3.445 17 O -0.625 6.625 18 C -0.566 4.566 19 H 0.084 0.916 20 C 0.031 3.969 21 N -0.822 5.822 22 Si 0.993 3.007 23 H -0.248 1.248 24 H -0.269 1.269 25 H -0.268 1.268 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -9.726 16.107 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 H 0.057 0.943 4 C -0.138 4.138 5 C -0.071 4.071 6 H 0.116 0.884 7 C -0.077 4.077 8 C -0.107 4.107 9 C -0.172 4.172 10 C 0.054 3.946 11 F -0.129 7.129 12 C -0.169 4.169 13 C -0.101 4.101 14 C 0.000 4.000 15 N -0.385 5.385 16 C 0.361 3.639 17 O -0.512 6.512 18 C -0.603 4.603 19 H 0.102 0.898 20 C -0.184 4.184 21 N -0.452 5.452 22 Si 0.812 3.188 23 H -0.171 1.171 24 H -0.193 1.193 25 H -0.193 1.193 26 H 0.102 0.898 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.185 -9.087 15.804 19.251 hybrid contribution -0.050 -0.286 -0.863 0.910 sum 6.135 -9.373 14.941 18.674 Atomic orbital electron populations 1.22008 0.96106 1.01297 1.01220 1.21439 0.94050 0.95578 0.86380 0.94288 1.22755 0.96553 0.99261 0.95248 1.21252 0.99189 0.94340 0.92349 0.88364 1.19683 0.94683 0.95301 0.98033 1.21016 0.99867 0.92462 0.97402 1.21273 0.96672 0.99936 0.99319 1.17964 0.96122 0.84589 0.95880 1.91469 1.94798 1.51100 1.75554 1.21337 1.00040 0.93654 1.01898 1.21155 0.96499 0.97430 0.95040 1.22146 0.94734 0.88839 0.94312 1.48580 1.55909 1.29456 1.04507 1.18311 0.80012 0.84497 0.81038 1.90548 1.45711 1.31540 1.83401 1.21428 1.35242 1.13036 0.90564 0.89802 1.26929 0.93325 0.95525 1.02650 1.70193 1.30857 1.23360 1.20748 0.85040 0.78562 0.78588 0.76563 1.17097 1.19343 1.19256 0.89842 0.95838 0.92942 0.88072 0.89313 0.84682 0.83614 0.82920 0.82891 0.92193 0.92545 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.09 71.98 0.65 -4.83 16 2 C 0.13 4.81 3.46 45.34 0.16 4.97 16 3 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -2.49 5.89 31.78 0.19 -2.31 16 5 C -0.05 -1.30 3.26 -10.15 -0.03 -1.34 16 6 H 0.10 2.32 7.96 -2.39 -0.02 2.30 16 7 C -0.08 -1.59 5.00 -19.86 -0.10 -1.69 16 8 C -0.09 -1.84 8.30 22.26 0.18 -1.66 16 9 C -0.15 -2.99 10.03 22.31 0.22 -2.76 16 10 C 0.07 1.48 7.30 22.38 0.16 1.64 16 11 F -0.15 -3.26 17.27 44.97 0.78 -2.48 16 12 C -0.15 -2.61 10.03 22.31 0.22 -2.39 16 13 C -0.08 -1.46 9.68 22.26 0.22 -1.24 16 14 C 0.12 4.27 5.92 86.86 0.51 4.78 16 15 N -0.65 -29.26 3.07 -793.08 -2.43 -31.69 16 16 C 0.56 32.54 7.57 86.36 0.65 33.19 16 17 O -0.63 -42.15 14.07 -4.32 -0.06 -42.22 16 18 C -0.57 -32.35 8.98 24.83 0.22 -32.13 16 19 H 0.08 4.36 6.64 -2.91 -0.02 4.34 16 20 C 0.03 1.72 5.50 85.30 0.47 2.19 16 21 N -0.82 -50.65 11.83 21.83 0.26 -50.39 16 22 Si 0.99 41.25 29.56 68.60 2.03 43.28 16 23 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.02 1.08 6.90 -2.39 -0.02 1.06 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 1.97 6.89 -2.39 -0.02 1.95 16 31 H 0.14 2.75 7.00 -2.91 -0.02 2.73 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.15 2.01 7.99 -2.91 -0.02 1.99 16 35 H 0.06 2.20 7.14 -2.39 -0.02 2.18 16 36 H 0.06 1.87 6.66 -2.39 -0.02 1.86 16 37 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 Total: -1.00 -76.38 311.29 5.39 -70.99 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 1.08 Total: 16.06 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 3.74 Total: -3.56 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.17 Total: -82.08 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.06 Total: -42.22 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.38 5.39 -70.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186805349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.444 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds