Wall clock time and date at job start Mon Mar 30 2020 01:44:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 110.91435 * 2 1
4 4 C 1.55158 * 111.00580 * 236.09516 * 2 1 3
5 5 C 1.54321 * 102.94398 * 206.42751 * 4 2 1
6 6 H 1.09007 * 109.88212 * 262.62465 * 5 4 2
7 7 C 1.50696 * 109.88748 * 141.61142 * 5 4 2
8 8 C 1.38265 * 119.99038 * 99.99698 * 7 5 4
9 9 C 1.38217 * 120.05343 * 179.72464 * 8 7 5
10 10 C 1.38216 * 120.02581 * 0.02562 * 9 8 7
11 11 C 1.38443 * 119.97557 * 359.97438 * 10 9 8
12 12 F 1.35099 * 120.02540 * 180.02562 * 11 10 9
13 13 C 1.38181 * 119.98309 * 279.72627 * 7 5 4
14 14 N 1.47029 * 107.26975 * 22.19112 * 5 4 2
15 15 C 1.34776 * 125.64504 * 181.04199 * 14 5 4
16 16 O 1.21693 * 120.00372 * 0.02562 * 15 14 5
17 17 C 1.46375 * 119.99766 * 180.02562 * 15 14 5
18 18 H 1.08004 * 120.00105 * 359.97438 * 17 15 14
19 19 C 1.40050 * 119.99895 * 179.97438 * 17 15 14
20 20 N 1.30667 * 120.00298 * 0.02562 * 19 17 15
21 21 Si 1.86800 * 119.99896 * 179.97438 * 19 17 15
22 22 H 1.48496 * 109.47134 * 59.99868 * 21 19 17
23 23 H 1.48502 * 109.47316 * 179.97438 * 21 19 17
24 24 H 1.48502 * 109.47071 * 299.99835 * 21 19 17
25 25 C 1.47421 * 108.70645 * 1.06278 * 14 5 4
26 26 H 1.09003 * 109.46922 * 183.90148 * 1 2 3
27 27 H 1.08996 * 109.47300 * 303.90447 * 1 2 3
28 28 H 1.09001 * 109.46924 * 63.90455 * 1 2 3
29 29 H 1.08999 * 110.71746 * 88.05970 * 4 2 1
30 30 H 1.09002 * 110.71620 * 324.78449 * 4 2 1
31 31 H 1.07997 * 119.96948 * 359.70295 * 8 7 5
32 32 H 1.08000 * 119.99035 * 179.97438 * 9 8 7
33 33 H 1.08004 * 120.01835 * 179.97438 * 10 9 8
34 34 H 1.08002 * 120.01473 * 0.25006 * 13 7 5
35 35 H 0.96995 * 120.00639 * 179.97438 * 20 19 17
36 36 H 1.08997 * 110.36736 * 217.03271 * 25 14 5
37 37 H 1.08998 * 110.46300 * 94.75340 * 25 14 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9191 1.0181 0.0000
4 6 2.0862 -0.8080 -1.2022
5 6 3.4675 -1.2742 -0.6959
6 1 4.2430 -0.6014 -1.0621
7 6 3.7407 -2.6778 -1.1715
8 6 4.5530 -2.8895 -2.2702
9 6 4.8091 -4.1766 -2.7040
10 6 4.2528 -5.2537 -2.0402
11 6 3.4393 -5.0431 -0.9400
12 9 2.8955 -6.0953 -0.2901
13 6 3.1838 -3.7532 -0.5060
14 7 3.4271 -1.2431 0.7735
15 6 4.4477 -1.5613 1.5942
16 8 5.5166 -1.9104 1.1289
17 6 4.2705 -1.4869 3.0452
18 1 3.3220 -1.1767 3.4582
19 6 5.3309 -1.8181 3.8981
20 7 6.4786 -2.1930 3.3985
21 14 5.1049 -1.7225 5.7499
22 1 4.0123 -2.6393 6.1632
23 1 6.3666 -2.1214 6.4238
24 1 4.7560 -0.3314 6.1348
25 6 2.0853 -0.8067 1.2004
26 1 -0.3633 -1.0253 0.0699
27 1 -0.3634 0.5732 0.8529
28 1 -0.3633 0.4520 -0.9229
29 1 2.1922 -0.1700 -2.0796
30 1 1.4469 -1.6633 -1.4208
31 1 4.9875 -2.0484 -2.7899
32 1 5.4434 -4.3407 -3.5626
33 1 4.4527 -6.2594 -2.3796
34 1 2.5496 -3.5877 0.3524
35 1 7.2131 -2.4220 3.9891
36 1 2.1560 -0.1720 2.0838
37 1 1.4507 -1.6693 1.4038
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000187319985.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:44:56
Heat of formation + Delta-G solvation = -61.064655 kcal
Electronic energy + Delta-G solvation = -21842.662677 eV
Core-core repulsion = 18498.936068 eV
Total energy + Delta-G solvation = -3343.726609 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.122 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.45831 -39.59958 -37.69121 -35.89691 -32.69304 -32.10013 -31.11263 -30.11463
-28.29293 -26.13313 -25.60819 -23.14040 -22.22821 -21.09676 -20.01240 -18.92159
-17.06448 -16.57761 -15.97606 -15.76119 -15.44820 -15.18298 -15.11553 -14.19272
-13.81116 -13.55138 -13.39510 -13.13928 -12.70982 -12.62408 -12.55662 -12.06535
-11.79024 -11.69043 -11.52745 -11.28421 -11.10446 -11.00679 -10.78700 -10.57743
-10.42317 -10.30439 -10.22032 -10.13925 -8.86119 -8.48450 -8.23643 -7.60018
-7.27425 -6.20245 -4.65514 1.60857 1.68332 3.14794 3.19827 3.21363
3.96456 4.09089 4.53018 4.53857 4.68155 4.85631 5.02236 5.09774
5.17047 5.29241 5.42806 5.60857 5.62790 5.72763 5.78223 5.83958
5.85125 5.92508 6.04753 6.14477 6.24302 6.28390 6.36141 6.47623
6.49101 6.59757 6.66245 6.72973 7.00506 7.30133 7.37538 7.42542
8.08618 8.38531 9.00961 9.46854 10.56970 10.75856
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.013410 B = 0.007391 C = 0.005721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2087.477063 B = 3787.519669 C = 4893.186591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.110 4.110
3 H 0.080 0.920
4 C -0.117 4.117
5 C 0.178 3.822
6 H 0.070 0.930
7 C -0.034 4.034
8 C -0.122 4.122
9 C -0.096 4.096
10 C -0.166 4.166
11 C 0.092 3.908
12 F -0.147 7.147
13 C -0.124 4.124
14 N -0.638 5.638
15 C 0.572 3.428
16 O -0.566 6.566
17 C -0.540 4.540
18 H 0.068 0.932
19 C 0.088 3.912
20 N -0.766 5.766
21 Si 0.906 3.094
22 H -0.268 1.268
23 H -0.280 1.280
24 H -0.268 1.268
25 C 0.121 3.879
26 H 0.055 0.945
27 H 0.056 0.944
28 H 0.053 0.947
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.123 0.877
32 H 0.126 0.874
33 H 0.126 0.874
34 H 0.131 0.869
35 H 0.269 0.731
36 H 0.071 0.929
37 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.347 0.926 -9.320 13.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.129 4.129
3 H 0.098 0.902
4 C -0.155 4.155
5 C 0.073 3.927
6 H 0.088 0.912
7 C -0.036 4.036
8 C -0.141 4.141
9 C -0.114 4.114
10 C -0.185 4.185
11 C 0.073 3.927
12 F -0.125 7.125
13 C -0.143 4.143
14 N -0.378 5.378
15 C 0.378 3.622
16 O -0.447 6.447
17 C -0.576 4.576
18 H 0.086 0.914
19 C -0.132 4.132
20 N -0.395 5.395
21 Si 0.731 3.269
22 H -0.193 1.193
23 H -0.205 1.205
24 H -0.192 1.192
25 C -0.003 4.003
26 H 0.074 0.926
27 H 0.075 0.925
28 H 0.072 0.928
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.141 0.859
32 H 0.144 0.856
33 H 0.144 0.856
34 H 0.149 0.851
35 H 0.080 0.920
36 H 0.089 0.911
37 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -8.473 0.605 -9.433 12.694
hybrid contribution -0.116 -0.232 1.164 1.192
sum -8.589 0.373 -8.269 11.928
Atomic orbital electron populations
1.21678 0.94577 1.01881 1.01417 1.22416 0.95354 0.99517 0.95612
0.90155 1.22732 0.95272 0.99744 0.97762 1.20164 0.96603 0.91151
0.84775 0.91169 1.20112 0.94214 0.95889 0.93366 1.20979 0.98719
0.97003 0.97366 1.20827 0.98986 0.92000 0.99584 1.20962 1.00543
1.00131 0.96890 1.17696 0.97618 0.83792 0.93569 1.91454 1.84294
1.56087 1.80690 1.20906 1.02330 0.90357 1.00667 1.48914 1.12680
1.73462 1.02713 1.18028 0.80916 0.76854 0.86361 1.90633 1.25663
1.51533 1.76866 1.20846 0.99236 1.48574 0.88974 0.91351 1.25706
0.94479 0.92838 1.00200 1.69999 1.01804 1.31638 1.36041 0.86454
0.78255 0.79335 0.82874 1.19261 1.20529 1.19243 1.21996 0.85202
0.96757 0.96356 0.92555 0.92523 0.92786 0.90835 0.90899 0.85916
0.85636 0.85564 0.85092 0.92026 0.91074 0.93512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.48 9.31 37.16 0.35 -1.14 16
2 C -0.11 -1.50 3.64 -88.46 -0.32 -1.82 16
3 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16
4 C -0.12 -1.63 5.94 -24.90 -0.15 -1.78 16
5 C 0.18 3.33 3.06 -68.10 -0.21 3.12 16
6 H 0.07 1.37 8.04 -51.92 -0.42 0.95 16
7 C -0.03 -0.65 4.09 -104.63 -0.43 -1.08 16
8 C -0.12 -2.05 9.67 -39.58 -0.38 -2.44 16
9 C -0.10 -1.46 10.04 -39.60 -0.40 -1.86 16
10 C -0.17 -2.71 10.03 -39.51 -0.40 -3.10 16
11 C 0.09 1.74 7.30 -39.42 -0.29 1.45 16
12 F -0.15 -2.77 17.27 2.25 0.04 -2.73 16
13 C -0.12 -2.47 9.11 -39.51 -0.36 -2.83 16
14 N -0.64 -14.14 2.29 -165.96 -0.38 -14.52 16
15 C 0.57 16.08 7.38 -12.99 -0.10 15.98 16
16 O -0.57 -18.11 14.86 5.19 0.08 -18.03 16
17 C -0.54 -15.15 8.98 -35.63 -0.32 -15.47 16
18 H 0.07 1.76 6.64 -52.48 -0.35 1.41 16
19 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16
20 N -0.77 -23.04 11.83 55.55 0.66 -22.38 16
21 Si 0.91 20.27 29.56 -169.99 -5.02 15.24 16
22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16
23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
25 C 0.12 2.16 5.99 -2.53 -0.02 2.14 16
26 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16
27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
30 H 0.07 0.98 7.72 -51.93 -0.40 0.58 16
31 H 0.12 1.79 8.05 -52.49 -0.42 1.37 16
32 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16
33 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16
34 H 0.13 2.72 7.66 -52.49 -0.40 2.32 16
35 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16
36 H 0.07 1.30 7.14 -51.93 -0.37 0.93 16
37 H 0.05 0.81 7.98 -51.93 -0.41 0.39 16
LS Contribution 315.45 15.07 4.75 4.75
Total: -1.00 -33.98 315.45 -7.86 -41.84
By element:
Atomic # 1 Polarization: 7.17 SS G_CDS: -4.87 Total: 2.30 kcal
Atomic # 6 Polarization: -3.35 SS G_CDS: -3.11 Total: -6.46 kcal
Atomic # 7 Polarization: -37.18 SS G_CDS: 0.28 Total: -36.91 kcal
Atomic # 8 Polarization: -18.11 SS G_CDS: 0.08 Total: -18.03 kcal
Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal
Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -33.98 -7.86 -41.84 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187319985.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.228 kcal
(2) G-P(sol) polarization free energy of solvation -33.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.065 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds