Wall clock time and date at job start Mon Mar 30 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.91435 * 2 1 4 4 C 1.55158 * 111.00580 * 236.09516 * 2 1 3 5 5 C 1.54321 * 102.94398 * 206.42751 * 4 2 1 6 6 H 1.09007 * 109.88212 * 262.62465 * 5 4 2 7 7 C 1.50696 * 109.88748 * 141.61142 * 5 4 2 8 8 C 1.38265 * 119.99038 * 99.99698 * 7 5 4 9 9 C 1.38217 * 120.05343 * 179.72464 * 8 7 5 10 10 C 1.38216 * 120.02581 * 0.02562 * 9 8 7 11 11 C 1.38443 * 119.97557 * 359.97438 * 10 9 8 12 12 F 1.35099 * 120.02540 * 180.02562 * 11 10 9 13 13 C 1.38181 * 119.98309 * 279.72627 * 7 5 4 14 14 N 1.47029 * 107.26975 * 22.19112 * 5 4 2 15 15 C 1.34776 * 125.64504 * 181.04199 * 14 5 4 16 16 O 1.21693 * 120.00372 * 0.02562 * 15 14 5 17 17 C 1.46375 * 119.99766 * 180.02562 * 15 14 5 18 18 H 1.08004 * 120.00105 * 359.97438 * 17 15 14 19 19 C 1.40050 * 119.99895 * 179.97438 * 17 15 14 20 20 N 1.30667 * 120.00298 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99896 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47134 * 59.99868 * 21 19 17 23 23 H 1.48502 * 109.47316 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47071 * 299.99835 * 21 19 17 25 25 C 1.47421 * 108.70645 * 1.06278 * 14 5 4 26 26 H 1.09003 * 109.46922 * 183.90148 * 1 2 3 27 27 H 1.08996 * 109.47300 * 303.90447 * 1 2 3 28 28 H 1.09001 * 109.46924 * 63.90455 * 1 2 3 29 29 H 1.08999 * 110.71746 * 88.05970 * 4 2 1 30 30 H 1.09002 * 110.71620 * 324.78449 * 4 2 1 31 31 H 1.07997 * 119.96948 * 359.70295 * 8 7 5 32 32 H 1.08000 * 119.99035 * 179.97438 * 9 8 7 33 33 H 1.08004 * 120.01835 * 179.97438 * 10 9 8 34 34 H 1.08002 * 120.01473 * 0.25006 * 13 7 5 35 35 H 0.96995 * 120.00639 * 179.97438 * 20 19 17 36 36 H 1.08997 * 110.36736 * 217.03271 * 25 14 5 37 37 H 1.08998 * 110.46300 * 94.75340 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0862 -0.8080 -1.2022 5 6 3.4675 -1.2742 -0.6959 6 1 4.2430 -0.6014 -1.0621 7 6 3.7407 -2.6778 -1.1715 8 6 4.5530 -2.8895 -2.2702 9 6 4.8091 -4.1766 -2.7040 10 6 4.2528 -5.2537 -2.0402 11 6 3.4393 -5.0431 -0.9400 12 9 2.8955 -6.0953 -0.2901 13 6 3.1838 -3.7532 -0.5060 14 7 3.4271 -1.2431 0.7735 15 6 4.4477 -1.5613 1.5942 16 8 5.5166 -1.9104 1.1289 17 6 4.2705 -1.4869 3.0452 18 1 3.3220 -1.1767 3.4582 19 6 5.3309 -1.8181 3.8981 20 7 6.4786 -2.1930 3.3985 21 14 5.1049 -1.7225 5.7499 22 1 4.0123 -2.6393 6.1632 23 1 6.3666 -2.1214 6.4238 24 1 4.7560 -0.3314 6.1348 25 6 2.0853 -0.8067 1.2004 26 1 -0.3633 -1.0253 0.0699 27 1 -0.3634 0.5732 0.8529 28 1 -0.3633 0.4520 -0.9229 29 1 2.1922 -0.1700 -2.0796 30 1 1.4469 -1.6633 -1.4208 31 1 4.9875 -2.0484 -2.7899 32 1 5.4434 -4.3407 -3.5626 33 1 4.4527 -6.2594 -2.3796 34 1 2.5496 -3.5877 0.3524 35 1 7.2131 -2.4220 3.9891 36 1 2.1560 -0.1720 2.0838 37 1 1.4507 -1.6693 1.4038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187319985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:55 Heat of formation + Delta-G solvation = -81.308777 kcal Electronic energy + Delta-G solvation = -21843.540528 eV Core-core repulsion = 18498.936068 eV Total energy + Delta-G solvation = -3344.604460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92592 -41.08486 -39.17970 -37.77830 -34.69472 -33.57040 -32.71497 -31.48878 -29.65115 -28.14668 -26.90822 -24.58915 -23.63708 -22.71193 -21.24581 -20.61146 -18.70303 -18.22994 -17.76133 -17.16181 -17.09360 -16.64929 -16.59541 -15.96744 -15.39031 -14.89883 -14.78570 -14.61060 -14.28208 -14.09461 -13.88038 -13.40734 -13.30743 -13.12030 -13.07806 -12.85000 -12.73437 -12.54200 -12.35657 -12.19527 -12.05109 -11.72976 -11.52537 -11.45920 -10.94036 -9.95924 -9.77151 -9.56243 -9.09083 -8.30201 -6.85452 0.22380 0.31591 1.35223 1.38814 1.49820 2.20181 2.45233 2.60053 2.91358 3.28495 3.53640 3.64345 3.80023 3.87036 3.91598 4.07981 4.14386 4.34747 4.35503 4.52872 4.64591 4.67784 4.83174 4.89528 4.92399 4.99180 5.08791 5.12792 5.17206 5.23418 5.30707 5.35631 5.38624 5.50903 5.60041 5.65512 5.98880 6.04441 6.43578 6.85920 7.49579 8.47897 8.67220 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.007391 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.477063 B = 3787.519669 C = 4893.186591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.103 4.103 5 C 0.170 3.830 6 H 0.057 0.943 7 C -0.053 4.053 8 C -0.130 4.130 9 C -0.085 4.085 10 C -0.163 4.163 11 C 0.068 3.932 12 F -0.153 7.153 13 C -0.149 4.149 14 N -0.643 5.643 15 C 0.560 3.440 16 O -0.618 6.618 17 C -0.569 4.569 18 H 0.082 0.918 19 C 0.030 3.970 20 N -0.820 5.820 21 Si 0.991 3.009 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.252 1.252 25 C 0.113 3.887 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.273 0.727 36 H 0.061 0.939 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 1.523 -10.278 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.141 4.141 5 C 0.065 3.935 6 H 0.075 0.925 7 C -0.054 4.054 8 C -0.149 4.149 9 C -0.103 4.103 10 C -0.182 4.182 11 C 0.050 3.950 12 F -0.132 7.132 13 C -0.169 4.169 14 N -0.380 5.380 15 C 0.366 3.634 16 O -0.504 6.504 17 C -0.605 4.605 18 H 0.100 0.900 19 C -0.185 4.185 20 N -0.449 5.449 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.176 1.176 25 C -0.010 4.010 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.175 0.825 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.832 1.227 -10.420 14.378 hybrid contribution 0.275 -0.423 1.364 1.454 sum -9.556 0.804 -9.056 13.190 Atomic orbital electron populations 1.21644 0.91755 1.02323 1.03123 1.22374 0.97439 0.98753 0.92959 0.89611 1.22727 0.92209 1.00406 0.98719 1.20440 0.99173 0.91291 0.82584 0.92463 1.20243 0.95164 0.95555 0.94456 1.21363 0.97906 0.98793 0.96831 1.21338 0.98079 0.90813 1.00067 1.21368 0.99093 1.02142 0.95573 1.18003 0.98895 0.83285 0.94865 1.91424 1.84583 1.56163 1.81064 1.20839 1.03580 0.91630 1.00815 1.48614 1.13010 1.72052 1.04345 1.18225 0.81368 0.76503 0.87318 1.90566 1.28093 1.53742 1.77994 1.21365 1.00201 1.49089 0.89892 0.89974 1.26912 0.93676 0.91580 1.06295 1.70173 1.03113 1.33149 1.38488 0.85177 0.78575 0.80184 0.75067 1.18201 1.19790 1.17558 1.22238 0.83327 0.97278 0.98181 0.92667 0.91667 0.90354 0.87616 0.90249 0.83732 0.81290 0.82528 0.87457 0.91699 0.92072 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.31 71.98 0.67 -1.77 16 2 C -0.10 -2.46 3.64 -9.40 -0.03 -2.50 16 3 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.10 -2.69 5.94 31.78 0.19 -2.50 16 5 C 0.17 6.41 3.06 44.59 0.14 6.54 16 6 H 0.06 2.27 8.04 -2.38 -0.02 2.25 16 7 C -0.05 -2.04 4.09 -19.87 -0.08 -2.12 16 8 C -0.13 -4.24 9.67 22.27 0.22 -4.03 16 9 C -0.09 -2.40 10.04 22.26 0.22 -2.17 16 10 C -0.16 -5.06 10.03 22.31 0.22 -4.83 16 11 C 0.07 2.62 7.30 22.38 0.16 2.79 16 12 F -0.15 -5.96 17.27 44.97 0.78 -5.18 16 13 C -0.15 -6.20 9.11 22.31 0.20 -6.00 16 14 N -0.64 -29.50 2.29 -797.20 -1.83 -31.33 16 15 C 0.56 32.96 7.38 86.36 0.64 33.60 16 16 O -0.62 -41.64 14.86 -4.33 -0.06 -41.71 16 17 C -0.57 -33.06 8.98 24.83 0.22 -32.84 16 18 H 0.08 4.35 6.64 -2.91 -0.02 4.33 16 19 C 0.03 1.74 5.50 85.31 0.47 2.21 16 20 N -0.82 -51.24 11.83 21.84 0.26 -50.98 16 21 Si 0.99 42.18 29.56 68.60 2.03 44.20 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 25 C 0.11 4.07 5.99 86.86 0.52 4.59 16 26 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.00 7.72 -2.39 -0.02 1.98 16 31 H 0.14 3.95 8.05 -2.91 -0.02 3.93 16 32 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 34 H 0.11 4.79 7.66 -2.91 -0.02 4.77 16 35 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 36 H 0.06 2.28 7.14 -2.39 -0.02 2.26 16 37 H 0.05 1.69 7.98 -2.39 -0.02 1.67 16 Total: -1.00 -79.06 315.45 6.00 -73.06 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.07 Total: 20.96 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 3.76 Total: -9.02 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -1.57 Total: -82.31 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.06 Total: -41.71 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.78 Total: -5.18 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -79.06 6.00 -73.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187319985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.250 kcal (2) G-P(sol) polarization free energy of solvation -79.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds