Wall clock time and date at job start Mon Mar 30 2020 01:44:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 110.91435 * 2 1
4 4 C 1.55158 * 111.00580 * 236.09516 * 2 1 3
5 5 C 1.54321 * 102.94398 * 206.42751 * 4 2 1
6 6 H 1.09007 * 109.88212 * 262.62465 * 5 4 2
7 7 C 1.50696 * 109.88748 * 141.61142 * 5 4 2
8 8 C 1.38265 * 119.99038 * 99.99698 * 7 5 4
9 9 C 1.38217 * 120.05343 * 179.72464 * 8 7 5
10 10 C 1.38216 * 120.02581 * 0.02562 * 9 8 7
11 11 C 1.38443 * 119.97557 * 359.97438 * 10 9 8
12 12 F 1.35099 * 120.02540 * 180.02562 * 11 10 9
13 13 C 1.38181 * 119.98309 * 279.72627 * 7 5 4
14 14 N 1.47029 * 107.26975 * 22.19112 * 5 4 2
15 15 C 1.34776 * 125.64504 * 181.04199 * 14 5 4
16 16 O 1.21693 * 120.00372 * 0.02562 * 15 14 5
17 17 C 1.46375 * 119.99766 * 180.02562 * 15 14 5
18 18 H 1.08004 * 120.00105 * 359.97438 * 17 15 14
19 19 C 1.40050 * 119.99895 * 179.97438 * 17 15 14
20 20 N 1.30667 * 120.00298 * 0.02562 * 19 17 15
21 21 Si 1.86800 * 119.99896 * 179.97438 * 19 17 15
22 22 H 1.48496 * 109.47134 * 59.99868 * 21 19 17
23 23 H 1.48502 * 109.47316 * 179.97438 * 21 19 17
24 24 H 1.48502 * 109.47071 * 299.99835 * 21 19 17
25 25 C 1.47421 * 108.70645 * 1.06278 * 14 5 4
26 26 H 1.09003 * 109.46922 * 183.90148 * 1 2 3
27 27 H 1.08996 * 109.47300 * 303.90447 * 1 2 3
28 28 H 1.09001 * 109.46924 * 63.90455 * 1 2 3
29 29 H 1.08999 * 110.71746 * 88.05970 * 4 2 1
30 30 H 1.09002 * 110.71620 * 324.78449 * 4 2 1
31 31 H 1.07997 * 119.96948 * 359.70295 * 8 7 5
32 32 H 1.08000 * 119.99035 * 179.97438 * 9 8 7
33 33 H 1.08004 * 120.01835 * 179.97438 * 10 9 8
34 34 H 1.08002 * 120.01473 * 0.25006 * 13 7 5
35 35 H 0.96995 * 120.00639 * 179.97438 * 20 19 17
36 36 H 1.08997 * 110.36736 * 217.03271 * 25 14 5
37 37 H 1.08998 * 110.46300 * 94.75340 * 25 14 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9191 1.0181 0.0000
4 6 2.0862 -0.8080 -1.2022
5 6 3.4675 -1.2742 -0.6959
6 1 4.2430 -0.6014 -1.0621
7 6 3.7407 -2.6778 -1.1715
8 6 4.5530 -2.8895 -2.2702
9 6 4.8091 -4.1766 -2.7040
10 6 4.2528 -5.2537 -2.0402
11 6 3.4393 -5.0431 -0.9400
12 9 2.8955 -6.0953 -0.2901
13 6 3.1838 -3.7532 -0.5060
14 7 3.4271 -1.2431 0.7735
15 6 4.4477 -1.5613 1.5942
16 8 5.5166 -1.9104 1.1289
17 6 4.2705 -1.4869 3.0452
18 1 3.3220 -1.1767 3.4582
19 6 5.3309 -1.8181 3.8981
20 7 6.4786 -2.1930 3.3985
21 14 5.1049 -1.7225 5.7499
22 1 4.0123 -2.6393 6.1632
23 1 6.3666 -2.1214 6.4238
24 1 4.7560 -0.3314 6.1348
25 6 2.0853 -0.8067 1.2004
26 1 -0.3633 -1.0253 0.0699
27 1 -0.3634 0.5732 0.8529
28 1 -0.3633 0.4520 -0.9229
29 1 2.1922 -0.1700 -2.0796
30 1 1.4469 -1.6633 -1.4208
31 1 4.9875 -2.0484 -2.7899
32 1 5.4434 -4.3407 -3.5626
33 1 4.4527 -6.2594 -2.3796
34 1 2.5496 -3.5877 0.3524
35 1 7.2131 -2.4220 3.9891
36 1 2.1560 -0.1720 2.0838
37 1 1.4507 -1.6693 1.4038
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000187319985.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:44:55
Heat of formation + Delta-G solvation = -81.308777 kcal
Electronic energy + Delta-G solvation = -21843.540528 eV
Core-core repulsion = 18498.936068 eV
Total energy + Delta-G solvation = -3344.604460 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.122 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-49.92592 -41.08486 -39.17970 -37.77830 -34.69472 -33.57040 -32.71497 -31.48878
-29.65115 -28.14668 -26.90822 -24.58915 -23.63708 -22.71193 -21.24581 -20.61146
-18.70303 -18.22994 -17.76133 -17.16181 -17.09360 -16.64929 -16.59541 -15.96744
-15.39031 -14.89883 -14.78570 -14.61060 -14.28208 -14.09461 -13.88038 -13.40734
-13.30743 -13.12030 -13.07806 -12.85000 -12.73437 -12.54200 -12.35657 -12.19527
-12.05109 -11.72976 -11.52537 -11.45920 -10.94036 -9.95924 -9.77151 -9.56243
-9.09083 -8.30201 -6.85452 0.22380 0.31591 1.35223 1.38814 1.49820
2.20181 2.45233 2.60053 2.91358 3.28495 3.53640 3.64345 3.80023
3.87036 3.91598 4.07981 4.14386 4.34747 4.35503 4.52872 4.64591
4.67784 4.83174 4.89528 4.92399 4.99180 5.08791 5.12792 5.17206
5.23418 5.30707 5.35631 5.38624 5.50903 5.60041 5.65512 5.98880
6.04441 6.43578 6.85920 7.49579 8.47897 8.67220
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.013410 B = 0.007391 C = 0.005721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2087.477063 B = 3787.519669 C = 4893.186591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.096 4.096
3 H 0.086 0.914
4 C -0.103 4.103
5 C 0.170 3.830
6 H 0.057 0.943
7 C -0.053 4.053
8 C -0.130 4.130
9 C -0.085 4.085
10 C -0.163 4.163
11 C 0.068 3.932
12 F -0.153 7.153
13 C -0.149 4.149
14 N -0.643 5.643
15 C 0.560 3.440
16 O -0.618 6.618
17 C -0.569 4.569
18 H 0.082 0.918
19 C 0.030 3.970
20 N -0.820 5.820
21 Si 0.991 3.009
22 H -0.258 1.258
23 H -0.273 1.273
24 H -0.252 1.252
25 C 0.113 3.887
26 H 0.054 0.946
27 H 0.064 0.936
28 H 0.078 0.922
29 H 0.105 0.895
30 H 0.079 0.921
31 H 0.145 0.855
32 H 0.170 0.830
33 H 0.157 0.843
34 H 0.107 0.893
35 H 0.273 0.727
36 H 0.061 0.939
37 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.634 1.523 -10.278 14.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.115 4.115
3 H 0.104 0.896
4 C -0.141 4.141
5 C 0.065 3.935
6 H 0.075 0.925
7 C -0.054 4.054
8 C -0.149 4.149
9 C -0.103 4.103
10 C -0.182 4.182
11 C 0.050 3.950
12 F -0.132 7.132
13 C -0.169 4.169
14 N -0.380 5.380
15 C 0.366 3.634
16 O -0.504 6.504
17 C -0.605 4.605
18 H 0.100 0.900
19 C -0.185 4.185
20 N -0.449 5.449
21 Si 0.810 3.190
22 H -0.182 1.182
23 H -0.198 1.198
24 H -0.176 1.176
25 C -0.010 4.010
26 H 0.073 0.927
27 H 0.083 0.917
28 H 0.096 0.904
29 H 0.124 0.876
30 H 0.098 0.902
31 H 0.163 0.837
32 H 0.187 0.813
33 H 0.175 0.825
34 H 0.125 0.875
35 H 0.083 0.917
36 H 0.079 0.921
37 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -9.832 1.227 -10.420 14.378
hybrid contribution 0.275 -0.423 1.364 1.454
sum -9.556 0.804 -9.056 13.190
Atomic orbital electron populations
1.21644 0.91755 1.02323 1.03123 1.22374 0.97439 0.98753 0.92959
0.89611 1.22727 0.92209 1.00406 0.98719 1.20440 0.99173 0.91291
0.82584 0.92463 1.20243 0.95164 0.95555 0.94456 1.21363 0.97906
0.98793 0.96831 1.21338 0.98079 0.90813 1.00067 1.21368 0.99093
1.02142 0.95573 1.18003 0.98895 0.83285 0.94865 1.91424 1.84583
1.56163 1.81064 1.20839 1.03580 0.91630 1.00815 1.48614 1.13010
1.72052 1.04345 1.18225 0.81368 0.76503 0.87318 1.90566 1.28093
1.53742 1.77994 1.21365 1.00201 1.49089 0.89892 0.89974 1.26912
0.93676 0.91580 1.06295 1.70173 1.03113 1.33149 1.38488 0.85177
0.78575 0.80184 0.75067 1.18201 1.19790 1.17558 1.22238 0.83327
0.97278 0.98181 0.92667 0.91667 0.90354 0.87616 0.90249 0.83732
0.81290 0.82528 0.87457 0.91699 0.92072 0.93433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.44 9.31 71.98 0.67 -1.77 16
2 C -0.10 -2.46 3.64 -9.40 -0.03 -2.50 16
3 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16
4 C -0.10 -2.69 5.94 31.78 0.19 -2.50 16
5 C 0.17 6.41 3.06 44.59 0.14 6.54 16
6 H 0.06 2.27 8.04 -2.38 -0.02 2.25 16
7 C -0.05 -2.04 4.09 -19.87 -0.08 -2.12 16
8 C -0.13 -4.24 9.67 22.27 0.22 -4.03 16
9 C -0.09 -2.40 10.04 22.26 0.22 -2.17 16
10 C -0.16 -5.06 10.03 22.31 0.22 -4.83 16
11 C 0.07 2.62 7.30 22.38 0.16 2.79 16
12 F -0.15 -5.96 17.27 44.97 0.78 -5.18 16
13 C -0.15 -6.20 9.11 22.31 0.20 -6.00 16
14 N -0.64 -29.50 2.29 -797.20 -1.83 -31.33 16
15 C 0.56 32.96 7.38 86.36 0.64 33.60 16
16 O -0.62 -41.64 14.86 -4.33 -0.06 -41.71 16
17 C -0.57 -33.06 8.98 24.83 0.22 -32.84 16
18 H 0.08 4.35 6.64 -2.91 -0.02 4.33 16
19 C 0.03 1.74 5.50 85.31 0.47 2.21 16
20 N -0.82 -51.24 11.83 21.84 0.26 -50.98 16
21 Si 0.99 42.18 29.56 68.60 2.03 44.20 16
22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
24 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16
25 C 0.11 4.07 5.99 86.86 0.52 4.59 16
26 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16
27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16
30 H 0.08 2.00 7.72 -2.39 -0.02 1.98 16
31 H 0.14 3.95 8.05 -2.91 -0.02 3.93 16
32 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16
33 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16
34 H 0.11 4.79 7.66 -2.91 -0.02 4.77 16
35 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16
36 H 0.06 2.28 7.14 -2.39 -0.02 2.26 16
37 H 0.05 1.69 7.98 -2.39 -0.02 1.67 16
Total: -1.00 -79.06 315.45 6.00 -73.06
By element:
Atomic # 1 Polarization: 19.89 SS G_CDS: 1.07 Total: 20.96 kcal
Atomic # 6 Polarization: -12.78 SS G_CDS: 3.76 Total: -9.02 kcal
Atomic # 7 Polarization: -80.74 SS G_CDS: -1.57 Total: -82.31 kcal
Atomic # 8 Polarization: -41.64 SS G_CDS: -0.06 Total: -41.71 kcal
Atomic # 9 Polarization: -5.96 SS G_CDS: 0.78 Total: -5.18 kcal
Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal
Total: -79.06 6.00 -73.06 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187319985.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.250 kcal
(2) G-P(sol) polarization free energy of solvation -79.056 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.306 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.309 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds