Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.88780 * 2 1 4 4 C 1.55160 * 111.00715 * 123.88201 * 2 1 3 5 5 C 1.54327 * 102.93740 * 82.57308 * 4 2 1 6 6 H 1.08999 * 109.88372 * 262.62072 * 5 4 2 7 7 C 1.50696 * 109.88199 * 141.61177 * 5 4 2 8 8 C 1.38274 * 119.98934 * 280.59542 * 7 5 4 9 9 C 1.38222 * 120.04924 * 180.32046 * 8 7 5 10 10 C 1.38222 * 120.02797 * 359.67769 * 9 8 7 11 11 C 1.38432 * 119.97113 * 0.02562 * 10 9 8 12 12 F 1.35103 * 120.02391 * 180.02562 * 11 10 9 13 13 C 1.38179 * 119.98700 * 100.31275 * 7 5 4 14 14 N 1.47018 * 107.40464 * 22.11693 * 5 4 2 15 15 C 1.34775 * 125.65157 * 181.10184 * 14 5 4 16 16 O 1.21689 * 119.99864 * 0.02562 * 15 14 5 17 17 C 1.46382 * 120.00194 * 180.02562 * 15 14 5 18 18 H 1.08001 * 119.99476 * 353.99152 * 17 15 14 19 19 C 1.40050 * 119.99669 * 173.99978 * 17 15 14 20 20 N 1.30672 * 120.00286 * 6.17401 * 19 17 15 21 21 Si 1.86801 * 119.99443 * 186.17966 * 19 17 15 22 22 H 1.48499 * 109.47296 * 94.98171 * 21 19 17 23 23 H 1.48497 * 109.46798 * 214.98100 * 21 19 17 24 24 H 1.48494 * 109.47322 * 334.97995 * 21 19 17 25 25 C 1.47755 * 108.53029 * 1.18119 * 14 5 4 26 26 H 1.09002 * 109.46833 * 296.11448 * 1 2 3 27 27 H 1.09002 * 109.47203 * 56.11067 * 1 2 3 28 28 H 1.08998 * 109.47072 * 176.11577 * 1 2 3 29 29 H 1.08998 * 110.71888 * 324.21129 * 4 2 1 30 30 H 1.08994 * 110.87509 * 201.00640 * 4 2 1 31 31 H 1.08003 * 119.97221 * 359.97438 * 8 7 5 32 32 H 1.08002 * 119.98478 * 179.69740 * 9 8 7 33 33 H 1.07997 * 120.01315 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.01528 * 359.97438 * 13 7 5 35 35 H 0.97000 * 119.99393 * 180.02562 * 20 19 17 36 36 H 1.08992 * 110.29209 * 216.94772 * 25 14 5 37 37 H 1.08998 * 110.43276 * 94.62737 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 1.2025 5 6 2.0285 -2.2644 0.6967 6 1 1.1233 -2.7485 1.0630 7 6 3.2421 -3.0205 1.1725 8 6 4.4506 -2.8705 0.5175 9 6 5.5630 -3.5685 0.9488 10 6 5.4701 -4.4122 2.0397 11 6 4.2622 -4.5584 2.6999 12 9 4.1703 -5.3825 3.7666 13 6 3.1483 -3.8589 2.2668 14 7 2.0119 -2.2194 -0.7727 15 6 1.9430 -3.2883 -1.5907 16 8 1.8874 -4.4102 -1.1224 17 6 1.9349 -3.1000 -3.0423 18 1 1.8861 -2.1040 -3.4572 19 6 1.9902 -4.2112 -3.8929 20 7 1.9273 -5.4181 -3.3960 21 14 2.1542 -3.9679 -5.7377 22 1 3.5864 -4.0469 -6.1221 23 1 1.3923 -5.0274 -6.4463 24 1 1.6142 -2.6360 -6.1112 25 6 2.0852 -0.8069 -1.2001 26 1 -0.3633 0.4524 0.9228 27 1 -0.3634 0.5730 -0.8531 28 1 -0.3633 -1.0253 -0.0696 29 1 1.4524 -0.6785 2.0798 30 1 3.1129 -0.5166 1.4241 31 1 4.5241 -2.2117 -0.3352 32 1 6.5052 -3.4543 0.4334 33 1 6.3394 -4.9572 2.3767 34 1 2.2055 -3.9722 2.7813 35 1 1.9660 -6.1877 -3.9852 36 1 1.4672 -0.6467 -2.0834 37 1 3.1182 -0.5237 -1.4023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187320007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = -60.310448 kcal Electronic energy + Delta-G solvation = -21826.609722 eV Core-core repulsion = 18482.915818 eV Total energy + Delta-G solvation = -3343.693904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.53602 -39.65220 -37.71124 -35.90308 -32.62861 -31.96953 -31.11758 -29.99727 -28.10588 -26.14430 -25.98301 -23.09083 -22.32341 -21.27770 -19.77136 -18.89911 -17.11865 -16.41308 -15.99992 -15.74237 -15.48586 -15.22436 -14.97610 -14.34413 -13.75299 -13.69643 -13.48165 -13.04635 -12.86357 -12.50821 -12.39572 -12.20042 -11.78270 -11.65359 -11.33087 -11.21652 -11.06294 -11.02371 -10.79838 -10.58378 -10.42949 -10.33016 -10.24296 -10.13115 -8.87319 -8.53262 -8.21282 -7.60296 -7.27278 -6.22368 -4.66064 1.62514 1.65520 3.11367 3.18888 3.21943 3.95957 4.08449 4.49645 4.52915 4.67948 4.85821 5.02289 5.11980 5.22742 5.24743 5.43114 5.64582 5.72664 5.74313 5.78862 5.79818 5.85468 5.93203 6.15945 6.21956 6.26704 6.35690 6.41152 6.47006 6.52993 6.54805 6.62988 6.75864 7.03378 7.28852 7.36906 7.41914 8.08215 8.38252 9.00132 9.46460 10.55785 10.74898 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.006980 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.356662 B = 4010.570703 C = 5254.005776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.079 0.921 4 C -0.118 4.118 5 C 0.179 3.821 6 H 0.068 0.932 7 C -0.034 4.034 8 C -0.101 4.101 9 C -0.094 4.094 10 C -0.165 4.165 11 C 0.090 3.910 12 F -0.148 7.148 13 C -0.145 4.145 14 N -0.635 5.635 15 C 0.573 3.427 16 O -0.566 6.566 17 C -0.540 4.540 18 H 0.069 0.931 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.121 3.879 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.268 0.732 36 H 0.072 0.928 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 9.674 7.497 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.156 4.156 5 C 0.074 3.926 6 H 0.086 0.914 7 C -0.035 4.035 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.184 4.184 11 C 0.071 3.929 12 F -0.127 7.127 13 C -0.164 4.164 14 N -0.375 5.375 15 C 0.379 3.621 16 O -0.447 6.447 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.132 4.132 20 N -0.394 5.394 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.004 4.004 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.141 8.711 7.682 12.031 hybrid contribution 0.132 -0.176 -0.815 0.844 sum 3.273 8.535 6.867 11.433 Atomic orbital electron populations 1.21704 0.94558 1.02539 1.00862 1.22378 0.96211 0.98540 0.95581 0.90229 1.22726 1.01414 0.93624 0.97788 1.20118 0.93814 0.93788 0.84871 0.91444 1.20120 0.95648 0.95056 0.92695 1.21005 0.91925 0.99901 0.99122 1.20915 0.98940 0.95887 0.95506 1.20959 0.96557 1.02455 0.98441 1.17603 0.95232 0.93158 0.86900 1.91445 1.97014 1.70377 1.53880 1.20885 0.97643 0.98769 0.99115 1.48962 1.80077 1.05881 1.02551 1.18029 0.76299 0.81364 0.86385 1.90642 1.54655 1.22669 1.76748 1.20873 1.54218 0.93636 0.88931 0.91280 1.25704 0.92723 0.94659 1.00110 1.70027 1.35005 0.98423 1.35960 0.86393 0.78760 0.78842 0.83009 1.19822 1.20465 1.18859 1.22048 0.99167 0.82787 0.96372 0.93168 0.92686 0.91989 0.90815 0.90926 0.85588 0.85634 0.85566 0.85421 0.92110 0.90984 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 37.16 0.34 -1.46 16 2 C -0.11 -1.44 3.72 -88.47 -0.33 -1.77 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.62 5.96 -24.89 -0.15 -1.76 16 5 C 0.18 3.32 2.72 -68.11 -0.19 3.14 16 6 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 7 C -0.03 -0.64 4.08 -104.63 -0.43 -1.06 16 8 C -0.10 -1.87 9.14 -39.57 -0.36 -2.23 16 9 C -0.09 -1.55 10.04 -39.59 -0.40 -1.95 16 10 C -0.17 -2.69 10.03 -39.52 -0.40 -3.09 16 11 C 0.09 1.59 7.30 -39.42 -0.29 1.31 16 12 F -0.15 -2.56 17.27 2.25 0.04 -2.52 16 13 C -0.14 -2.64 9.66 -39.51 -0.38 -3.02 16 14 N -0.63 -13.65 2.32 -165.71 -0.38 -14.03 16 15 C 0.57 15.76 7.41 -12.98 -0.10 15.67 16 16 O -0.57 -17.95 14.88 5.20 0.08 -17.87 16 17 C -0.54 -14.82 9.00 -35.63 -0.32 -15.14 16 18 H 0.07 1.75 6.62 -52.49 -0.35 1.40 16 19 C 0.09 2.41 5.49 -17.37 -0.10 2.32 16 20 N -0.77 -22.73 11.85 55.55 0.66 -22.07 16 21 Si 0.91 19.89 29.56 -169.99 -5.03 14.87 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 25 C 0.12 2.06 6.04 -2.35 -0.01 2.05 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 29 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 30 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 31 H 0.13 2.34 7.69 -52.48 -0.40 1.94 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.13 2.13 8.05 -52.49 -0.42 1.71 16 35 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 36 H 0.07 1.28 7.00 -51.93 -0.36 0.92 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -33.28 315.12 -7.84 -41.12 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.86 Total: 2.78 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.10 Total: -7.02 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.27 Total: -36.10 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.08 Total: -17.87 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.28 -7.84 -41.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187320007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.190 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds