Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.88780 * 2 1 4 4 C 1.55160 * 111.00715 * 123.88201 * 2 1 3 5 5 C 1.54327 * 102.93740 * 82.57308 * 4 2 1 6 6 H 1.08999 * 109.88372 * 262.62072 * 5 4 2 7 7 C 1.50696 * 109.88199 * 141.61177 * 5 4 2 8 8 C 1.38274 * 119.98934 * 280.59542 * 7 5 4 9 9 C 1.38222 * 120.04924 * 180.32046 * 8 7 5 10 10 C 1.38222 * 120.02797 * 359.67769 * 9 8 7 11 11 C 1.38432 * 119.97113 * 0.02562 * 10 9 8 12 12 F 1.35103 * 120.02391 * 180.02562 * 11 10 9 13 13 C 1.38179 * 119.98700 * 100.31275 * 7 5 4 14 14 N 1.47018 * 107.40464 * 22.11693 * 5 4 2 15 15 C 1.34775 * 125.65157 * 181.10184 * 14 5 4 16 16 O 1.21689 * 119.99864 * 0.02562 * 15 14 5 17 17 C 1.46382 * 120.00194 * 180.02562 * 15 14 5 18 18 H 1.08001 * 119.99476 * 353.99152 * 17 15 14 19 19 C 1.40050 * 119.99669 * 173.99978 * 17 15 14 20 20 N 1.30672 * 120.00286 * 6.17401 * 19 17 15 21 21 Si 1.86801 * 119.99443 * 186.17966 * 19 17 15 22 22 H 1.48499 * 109.47296 * 94.98171 * 21 19 17 23 23 H 1.48497 * 109.46798 * 214.98100 * 21 19 17 24 24 H 1.48494 * 109.47322 * 334.97995 * 21 19 17 25 25 C 1.47755 * 108.53029 * 1.18119 * 14 5 4 26 26 H 1.09002 * 109.46833 * 296.11448 * 1 2 3 27 27 H 1.09002 * 109.47203 * 56.11067 * 1 2 3 28 28 H 1.08998 * 109.47072 * 176.11577 * 1 2 3 29 29 H 1.08998 * 110.71888 * 324.21129 * 4 2 1 30 30 H 1.08994 * 110.87509 * 201.00640 * 4 2 1 31 31 H 1.08003 * 119.97221 * 359.97438 * 8 7 5 32 32 H 1.08002 * 119.98478 * 179.69740 * 9 8 7 33 33 H 1.07997 * 120.01315 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.01528 * 359.97438 * 13 7 5 35 35 H 0.97000 * 119.99393 * 180.02562 * 20 19 17 36 36 H 1.08992 * 110.29209 * 216.94772 * 25 14 5 37 37 H 1.08998 * 110.43276 * 94.62737 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 1.2025 5 6 2.0285 -2.2644 0.6967 6 1 1.1233 -2.7485 1.0630 7 6 3.2421 -3.0205 1.1725 8 6 4.4506 -2.8705 0.5175 9 6 5.5630 -3.5685 0.9488 10 6 5.4701 -4.4122 2.0397 11 6 4.2622 -4.5584 2.6999 12 9 4.1703 -5.3825 3.7666 13 6 3.1483 -3.8589 2.2668 14 7 2.0119 -2.2194 -0.7727 15 6 1.9430 -3.2883 -1.5907 16 8 1.8874 -4.4102 -1.1224 17 6 1.9349 -3.1000 -3.0423 18 1 1.8861 -2.1040 -3.4572 19 6 1.9902 -4.2112 -3.8929 20 7 1.9273 -5.4181 -3.3960 21 14 2.1542 -3.9679 -5.7377 22 1 3.5864 -4.0469 -6.1221 23 1 1.3923 -5.0274 -6.4463 24 1 1.6142 -2.6360 -6.1112 25 6 2.0852 -0.8069 -1.2001 26 1 -0.3633 0.4524 0.9228 27 1 -0.3634 0.5730 -0.8531 28 1 -0.3633 -1.0253 -0.0696 29 1 1.4524 -0.6785 2.0798 30 1 3.1129 -0.5166 1.4241 31 1 4.5241 -2.2117 -0.3352 32 1 6.5052 -3.4543 0.4334 33 1 6.3394 -4.9572 2.3767 34 1 2.2055 -3.9722 2.7813 35 1 1.9660 -6.1877 -3.9852 36 1 1.4672 -0.6467 -2.0834 37 1 3.1182 -0.5237 -1.4023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187320007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = -79.734178 kcal Electronic energy + Delta-G solvation = -21827.451999 eV Core-core repulsion = 18482.915818 eV Total energy + Delta-G solvation = -3344.536180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91747 -41.11630 -39.18272 -37.77796 -34.65205 -33.38004 -32.71751 -31.39867 -29.46747 -28.11306 -27.27967 -24.55795 -23.70024 -22.87735 -21.09496 -20.50276 -18.73305 -18.01057 -17.65392 -17.28681 -17.11592 -16.60891 -16.31028 -16.09419 -15.39518 -14.98750 -14.77025 -14.49682 -14.22198 -14.16538 -13.91897 -13.68563 -13.31717 -13.09699 -12.91318 -12.78852 -12.63862 -12.55979 -12.27872 -12.17294 -11.98141 -11.63049 -11.60090 -11.50437 -10.92229 -9.96006 -9.76198 -9.55469 -9.04296 -8.27807 -6.80950 0.22791 0.28591 1.38714 1.39424 1.54912 2.22612 2.48941 2.58693 2.93971 3.26529 3.57319 3.66220 3.79803 3.84983 3.92206 4.12028 4.15055 4.30224 4.42301 4.46073 4.56884 4.73178 4.84149 4.90288 4.99468 5.06533 5.12727 5.13315 5.17659 5.18528 5.28291 5.35718 5.37198 5.50344 5.62926 5.69935 5.97531 6.08838 6.46874 6.89950 7.54801 8.51786 8.71090 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.006980 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.356662 B = 4010.570703 C = 5254.005776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.120 0.880 4 C -0.104 4.104 5 C 0.173 3.827 6 H 0.042 0.958 7 C -0.050 4.050 8 C -0.119 4.119 9 C -0.093 4.093 10 C -0.162 4.162 11 C 0.079 3.921 12 F -0.148 7.148 13 C -0.162 4.162 14 N -0.637 5.637 15 C 0.561 3.439 16 O -0.623 6.623 17 C -0.565 4.565 18 H 0.085 0.915 19 C 0.031 3.969 20 N -0.821 5.821 21 Si 0.991 3.009 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.247 1.247 25 C 0.111 3.889 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.132 0.868 35 H 0.272 0.728 36 H 0.062 0.938 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 12.086 7.130 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.138 0.862 4 C -0.142 4.142 5 C 0.069 3.931 6 H 0.060 0.940 7 C -0.052 4.052 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.181 4.181 11 C 0.060 3.940 12 F -0.126 7.126 13 C -0.182 4.182 14 N -0.374 5.374 15 C 0.368 3.632 16 O -0.509 6.509 17 C -0.601 4.601 18 H 0.103 0.897 19 C -0.184 4.184 20 N -0.451 5.451 21 Si 0.810 3.190 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.170 1.170 25 C -0.012 4.012 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.242 11.199 7.345 14.048 hybrid contribution -0.222 -0.911 -0.616 1.122 sum 4.020 10.288 6.729 12.934 Atomic orbital electron populations 1.21702 0.94385 1.00639 1.02760 1.22388 0.96242 0.99663 0.92916 0.86164 1.22725 1.02980 0.89887 0.98606 1.20311 0.92791 0.96992 0.83047 0.93996 1.20220 0.96017 0.95715 0.93237 1.21112 0.92628 1.00818 0.99217 1.21279 0.99553 0.94853 0.95356 1.21317 0.96962 1.02004 0.97801 1.17802 0.95753 0.93243 0.87203 1.91442 1.97058 1.70306 1.53824 1.21034 0.98349 0.99221 0.99558 1.48627 1.78360 1.06619 1.03783 1.18245 0.75834 0.81813 0.87353 1.90585 1.57029 1.25328 1.77924 1.21369 1.54458 0.94659 0.89644 0.89680 1.26907 0.91457 0.93916 1.06107 1.70208 1.36714 0.99771 1.38409 0.85106 0.79117 0.79460 0.75270 1.18836 1.20050 1.17029 1.22332 1.00095 0.80806 0.97925 0.90488 0.91730 0.95638 0.88464 0.89448 0.86189 0.82563 0.82504 0.85042 0.91841 0.91984 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.20 71.98 0.66 -2.62 16 2 C -0.09 -2.22 3.72 -9.40 -0.03 -2.26 16 3 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 4 C -0.10 -2.65 5.96 31.79 0.19 -2.46 16 5 C 0.17 6.53 2.72 44.60 0.12 6.66 16 6 H 0.04 1.76 8.03 -2.39 -0.02 1.74 16 7 C -0.05 -1.95 4.08 -19.87 -0.08 -2.03 16 8 C -0.12 -4.40 9.14 22.27 0.20 -4.20 16 9 C -0.09 -2.93 10.04 22.26 0.22 -2.71 16 10 C -0.16 -5.05 10.03 22.31 0.22 -4.82 16 11 C 0.08 2.78 7.30 22.37 0.16 2.94 16 12 F -0.15 -5.03 17.27 44.97 0.78 -4.25 16 13 C -0.16 -6.06 9.66 22.31 0.22 -5.85 16 14 N -0.64 -27.97 2.32 -796.40 -1.84 -29.81 16 15 C 0.56 32.14 7.41 86.36 0.64 32.78 16 16 O -0.62 -41.66 14.88 -4.31 -0.06 -41.72 16 17 C -0.56 -31.68 9.00 24.83 0.22 -31.45 16 18 H 0.09 4.31 6.62 -2.91 -0.02 4.29 16 19 C 0.03 1.73 5.49 85.30 0.47 2.20 16 20 N -0.82 -50.59 11.85 21.84 0.26 -50.33 16 21 Si 0.99 40.98 29.56 68.60 2.03 43.01 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 25 C 0.11 3.70 6.04 86.79 0.52 4.22 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.02 0.78 7.91 -2.39 -0.02 0.76 16 29 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 30 H 0.09 2.01 7.81 -2.39 -0.02 1.99 16 31 H 0.12 4.47 7.69 -2.91 -0.02 4.45 16 32 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.13 4.60 8.05 -2.91 -0.02 4.58 16 35 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 36 H 0.06 2.17 7.00 -2.39 -0.02 2.15 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.73 315.12 5.97 -70.76 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.07 Total: 21.96 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.74 Total: -9.61 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.59 Total: -80.14 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.06 Total: -41.72 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -76.73 5.97 -70.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187320007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.971 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds