Wall clock time and date at job start Mon Mar 30 2020 01:45:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08998 * 110.91814 * 2 1
4 4 C 1.55151 * 111.00550 * 123.90703 * 2 1 3
5 5 C 1.54318 * 102.94375 * 153.57418 * 4 2 1
6 6 H 1.09004 * 110.01049 * 97.29730 * 5 4 2
7 7 C 1.50703 * 109.88480 * 218.38962 * 5 4 2
8 8 C 1.38265 * 119.98622 * 78.98389 * 7 5 4
9 9 C 1.38227 * 120.05074 * 179.77233 * 8 7 5
10 10 C 1.38219 * 120.02365 * 0.50650 * 9 8 7
11 11 C 1.38436 * 119.97603 * 359.75156 * 10 9 8
12 12 F 1.35099 * 120.02897 * 179.97438 * 11 10 9
13 13 C 1.38171 * 119.98744 * 259.26554 * 7 5 4
14 14 N 1.47017 * 107.27230 * 337.80338 * 5 4 2
15 15 C 1.34784 * 125.64909 * 178.90166 * 14 5 4
16 16 O 1.21683 * 119.99753 * 0.02562 * 15 14 5
17 17 C 1.46372 * 119.99621 * 180.02562 * 15 14 5
18 18 H 1.08001 * 120.00406 * 359.97438 * 17 15 14
19 19 C 1.40051 * 119.99461 * 180.02562 * 17 15 14
20 20 N 1.30666 * 120.00375 * 359.97438 * 19 17 15
21 21 Si 1.86807 * 119.99762 * 179.97438 * 19 17 15
22 22 H 1.48498 * 109.46880 * 60.00309 * 21 19 17
23 23 H 1.48500 * 109.47057 * 179.97438 * 21 19 17
24 24 H 1.48497 * 109.47102 * 299.99845 * 21 19 17
25 25 C 1.47421 * 108.70491 * 358.94381 * 14 5 4
26 26 H 1.08997 * 109.47419 * 182.44000 * 1 2 3
27 27 H 1.08994 * 109.47216 * 302.44818 * 1 2 3
28 28 H 1.09000 * 109.47149 * 62.44521 * 1 2 3
29 29 H 1.08998 * 110.71811 * 271.93936 * 4 2 1
30 30 H 1.09005 * 110.72107 * 35.20878 * 4 2 1
31 31 H 1.08004 * 119.97892 * 0.02562 * 8 7 5
32 32 H 1.07999 * 119.98872 * 180.25525 * 9 8 7
33 33 H 1.07998 * 120.01584 * 179.76853 * 10 9 8
34 34 H 1.08000 * 120.01491 * 359.95118 * 13 7 5
35 35 H 0.97003 * 120.00238 * 180.02562 * 20 19 17
36 36 H 1.09001 * 110.36853 * 265.29067 * 25 14 5
37 37 H 1.08995 * 110.46528 * 143.00769 * 25 14 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9192 1.0181 0.0000
4 6 2.0861 -0.8080 1.2021
5 6 3.4674 -1.2742 0.6959
6 1 4.2444 -0.6019 1.0597
7 6 3.7406 -2.6779 1.1714
8 6 3.1619 -3.7525 0.5217
9 6 3.4153 -5.0408 0.9538
10 6 4.2393 -5.2556 2.0426
11 6 4.8150 -4.1801 2.6972
12 9 5.6201 -4.3888 3.7618
13 6 4.5646 -2.8901 2.2600
14 7 3.4270 -1.2431 -0.7734
15 6 4.4480 -1.5603 -1.5942
16 8 5.5169 -1.9092 -1.1288
17 6 4.2710 -1.4850 -3.0452
18 1 3.3222 -1.1758 -3.4582
19 6 5.3318 -1.8151 -3.8980
20 7 6.4795 -2.1898 -3.3984
21 14 5.1057 -1.7198 -5.7499
22 1 4.7554 -0.3290 -6.1348
23 1 6.3682 -2.1162 -6.4237
24 1 4.0141 -2.6378 -6.1632
25 6 2.0852 -0.8066 -1.2004
26 1 -0.3634 -1.0267 0.0437
27 1 -0.3633 0.5513 0.8672
28 1 -0.3633 0.4754 -0.9111
29 1 2.1922 -0.1701 2.0795
30 1 1.4467 -1.6633 1.4208
31 1 2.5147 -3.5855 -0.3266
32 1 2.9661 -5.8797 0.4431
33 1 4.4342 -6.2620 2.3824
34 1 5.0135 -2.0504 2.7697
35 1 7.2143 -2.4180 -3.9891
36 1 1.4518 -1.6703 -1.4025
37 1 2.1541 -0.1724 -2.0842
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000187320045.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:45:01
Heat of formation + Delta-G solvation = -61.341124 kcal
Electronic energy + Delta-G solvation = -21714.439574 eV
Core-core repulsion = 18370.700977 eV
Total energy + Delta-G solvation = -3343.738597 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.122 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.53792 -39.61358 -37.67997 -35.90969 -32.70092 -32.11449 -31.23217 -30.00236
-28.30346 -26.14564 -25.61959 -23.08850 -22.32767 -21.11275 -20.02068 -18.94099
-17.02429 -16.45474 -16.12943 -15.74783 -15.50090 -15.24097 -15.14481 -14.22294
-14.00195 -13.41755 -13.30189 -13.22826 -12.72372 -12.63207 -12.56594 -12.07452
-11.86272 -11.67099 -11.49236 -11.29224 -11.10929 -11.01529 -10.74864 -10.63177
-10.44805 -10.29481 -10.23802 -10.15477 -8.87463 -8.53777 -8.21778 -7.60951
-7.28091 -6.21420 -4.67012 1.62177 1.65350 3.13264 3.18516 3.20038
3.95672 4.08274 4.47963 4.54270 4.66306 4.84224 5.01515 5.09752
5.21058 5.22962 5.43979 5.59928 5.69905 5.71960 5.76801 5.78430
5.84239 5.91995 6.03304 6.13880 6.21375 6.24455 6.39659 6.46797
6.52815 6.54529 6.63586 6.75840 7.03064 7.28848 7.36820 7.41100
8.07230 8.37255 8.99552 9.46072 10.55908 10.74844
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.014201 B = 0.006901 C = 0.005177
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1971.203448 B = 4056.337003 C = 5407.164062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.110 4.110
3 H 0.080 0.920
4 C -0.117 4.117
5 C 0.178 3.822
6 H 0.068 0.932
7 C -0.033 4.033
8 C -0.101 4.101
9 C -0.094 4.094
10 C -0.165 4.165
11 C 0.090 3.910
12 F -0.148 7.148
13 C -0.144 4.144
14 N -0.637 5.637
15 C 0.572 3.428
16 O -0.565 6.565
17 C -0.540 4.540
18 H 0.068 0.932
19 C 0.088 3.912
20 N -0.766 5.766
21 Si 0.906 3.094
22 H -0.268 1.268
23 H -0.280 1.280
24 H -0.268 1.268
25 C 0.122 3.878
26 H 0.055 0.945
27 H 0.053 0.947
28 H 0.056 0.944
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.126 0.874
32 H 0.126 0.874
33 H 0.126 0.874
34 H 0.128 0.872
35 H 0.269 0.731
36 H 0.047 0.953
37 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.799 0.026 7.513 13.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.129 4.129
3 H 0.098 0.902
4 C -0.155 4.155
5 C 0.073 3.927
6 H 0.086 0.914
7 C -0.035 4.035
8 C -0.119 4.119
9 C -0.113 4.113
10 C -0.184 4.184
11 C 0.071 3.929
12 F -0.127 7.127
13 C -0.164 4.164
14 N -0.377 5.377
15 C 0.378 3.622
16 O -0.447 6.447
17 C -0.576 4.576
18 H 0.087 0.913
19 C -0.132 4.132
20 N -0.395 5.395
21 Si 0.731 3.269
22 H -0.193 1.193
23 H -0.206 1.206
24 H -0.193 1.193
25 C -0.002 4.002
26 H 0.074 0.926
27 H 0.072 0.928
28 H 0.075 0.925
29 H 0.091 0.909
30 H 0.092 0.908
31 H 0.144 0.856
32 H 0.144 0.856
33 H 0.144 0.856
34 H 0.146 0.854
35 H 0.080 0.920
36 H 0.065 0.935
37 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -9.868 -0.259 7.696 12.517
hybrid contribution 0.168 -0.049 -0.818 0.836
sum -9.701 -0.308 6.878 11.896
Atomic orbital electron populations
1.21673 0.94564 1.01797 1.01486 1.22416 0.95352 0.99540 0.95619
0.90184 1.22730 0.95227 0.99749 0.97766 1.20150 0.96605 0.91169
0.84800 0.91361 1.20100 0.93883 0.96751 0.92749 1.21000 1.00098
0.91730 0.99116 1.20914 0.97587 0.97239 0.95511 1.20961 1.01046
0.97917 0.98475 1.17603 0.93977 0.94339 0.86979 1.91445 1.71399
1.95843 1.54018 1.20887 1.01038 0.95318 0.99124 1.48909 1.12683
1.73448 1.02643 1.18032 0.80909 0.76874 0.86351 1.90639 1.25663
1.51503 1.76846 1.20842 0.99208 1.48648 0.88949 0.91338 1.25708
0.94478 0.92858 1.00177 1.70005 1.01791 1.31631 1.36042 0.86456
0.78229 0.79344 0.82888 1.19262 1.20551 1.19264 1.21984 0.85176
0.96769 0.96319 0.92570 0.92824 0.92484 0.90891 0.90820 0.85620
0.85619 0.85553 0.85397 0.92013 0.93469 0.91086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.44 9.29 37.16 0.35 -1.09 16
2 C -0.11 -1.48 3.64 -88.47 -0.32 -1.80 16
3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16
4 C -0.12 -1.62 5.93 -24.90 -0.15 -1.76 16
5 C 0.18 3.33 3.05 -68.11 -0.21 3.12 16
6 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16
7 C -0.03 -0.63 4.09 -104.63 -0.43 -1.06 16
8 C -0.10 -1.87 9.13 -39.58 -0.36 -2.23 16
9 C -0.09 -1.55 10.04 -39.59 -0.40 -1.95 16
10 C -0.17 -2.68 10.03 -39.52 -0.40 -3.08 16
11 C 0.09 1.59 7.30 -39.42 -0.29 1.30 16
12 F -0.15 -2.55 17.27 2.25 0.04 -2.51 16
13 C -0.14 -2.64 9.66 -39.51 -0.38 -3.02 16
14 N -0.64 -13.90 2.33 -165.97 -0.39 -14.28 16
15 C 0.57 15.87 7.42 -12.98 -0.10 15.78 16
16 O -0.57 -18.03 14.86 5.20 0.08 -17.95 16
17 C -0.54 -14.90 8.98 -35.63 -0.32 -15.22 16
18 H 0.07 1.73 6.64 -52.49 -0.35 1.38 16
19 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16
20 N -0.77 -22.82 11.83 55.55 0.66 -22.16 16
21 Si 0.91 19.92 29.56 -169.99 -5.02 14.90 16
22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
25 C 0.12 2.11 5.99 -2.53 -0.02 2.09 16
26 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16
27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.07 0.97 7.67 -51.93 -0.40 0.57 16
31 H 0.13 2.34 7.69 -52.48 -0.40 1.94 16
32 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16
33 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16
34 H 0.13 2.14 8.05 -52.49 -0.42 1.71 16
35 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16
36 H 0.05 0.78 8.04 -51.93 -0.42 0.36 16
37 H 0.07 1.27 7.14 -51.93 -0.37 0.90 16
LS Contribution 315.56 15.07 4.76 4.76
Total: -1.00 -33.47 315.56 -7.86 -41.33
By element:
Atomic # 1 Polarization: 7.39 SS G_CDS: -4.87 Total: 2.52 kcal
Atomic # 6 Polarization: -3.48 SS G_CDS: -3.11 Total: -6.60 kcal
Atomic # 7 Polarization: -36.72 SS G_CDS: 0.27 Total: -36.45 kcal
Atomic # 8 Polarization: -18.03 SS G_CDS: 0.08 Total: -17.95 kcal
Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal
Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -33.47 -7.86 -41.33 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187320045.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.010 kcal
(2) G-P(sol) polarization free energy of solvation -33.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.477 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds