Wall clock time and date at job start Mon Mar 30 2020 01:45:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08998 * 110.91814 * 2 1
4 4 C 1.55151 * 111.00550 * 123.90703 * 2 1 3
5 5 C 1.54318 * 102.94375 * 153.57418 * 4 2 1
6 6 H 1.09004 * 110.01049 * 97.29730 * 5 4 2
7 7 C 1.50703 * 109.88480 * 218.38962 * 5 4 2
8 8 C 1.38265 * 119.98622 * 78.98389 * 7 5 4
9 9 C 1.38227 * 120.05074 * 179.77233 * 8 7 5
10 10 C 1.38219 * 120.02365 * 0.50650 * 9 8 7
11 11 C 1.38436 * 119.97603 * 359.75156 * 10 9 8
12 12 F 1.35099 * 120.02897 * 179.97438 * 11 10 9
13 13 C 1.38171 * 119.98744 * 259.26554 * 7 5 4
14 14 N 1.47017 * 107.27230 * 337.80338 * 5 4 2
15 15 C 1.34784 * 125.64909 * 178.90166 * 14 5 4
16 16 O 1.21683 * 119.99753 * 0.02562 * 15 14 5
17 17 C 1.46372 * 119.99621 * 180.02562 * 15 14 5
18 18 H 1.08001 * 120.00406 * 359.97438 * 17 15 14
19 19 C 1.40051 * 119.99461 * 180.02562 * 17 15 14
20 20 N 1.30666 * 120.00375 * 359.97438 * 19 17 15
21 21 Si 1.86807 * 119.99762 * 179.97438 * 19 17 15
22 22 H 1.48498 * 109.46880 * 60.00309 * 21 19 17
23 23 H 1.48500 * 109.47057 * 179.97438 * 21 19 17
24 24 H 1.48497 * 109.47102 * 299.99845 * 21 19 17
25 25 C 1.47421 * 108.70491 * 358.94381 * 14 5 4
26 26 H 1.08997 * 109.47419 * 182.44000 * 1 2 3
27 27 H 1.08994 * 109.47216 * 302.44818 * 1 2 3
28 28 H 1.09000 * 109.47149 * 62.44521 * 1 2 3
29 29 H 1.08998 * 110.71811 * 271.93936 * 4 2 1
30 30 H 1.09005 * 110.72107 * 35.20878 * 4 2 1
31 31 H 1.08004 * 119.97892 * 0.02562 * 8 7 5
32 32 H 1.07999 * 119.98872 * 180.25525 * 9 8 7
33 33 H 1.07998 * 120.01584 * 179.76853 * 10 9 8
34 34 H 1.08000 * 120.01491 * 359.95118 * 13 7 5
35 35 H 0.97003 * 120.00238 * 180.02562 * 20 19 17
36 36 H 1.09001 * 110.36853 * 265.29067 * 25 14 5
37 37 H 1.08995 * 110.46528 * 143.00769 * 25 14 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9192 1.0181 0.0000
4 6 2.0861 -0.8080 1.2021
5 6 3.4674 -1.2742 0.6959
6 1 4.2444 -0.6019 1.0597
7 6 3.7406 -2.6779 1.1714
8 6 3.1619 -3.7525 0.5217
9 6 3.4153 -5.0408 0.9538
10 6 4.2393 -5.2556 2.0426
11 6 4.8150 -4.1801 2.6972
12 9 5.6201 -4.3888 3.7618
13 6 4.5646 -2.8901 2.2600
14 7 3.4270 -1.2431 -0.7734
15 6 4.4480 -1.5603 -1.5942
16 8 5.5169 -1.9092 -1.1288
17 6 4.2710 -1.4850 -3.0452
18 1 3.3222 -1.1758 -3.4582
19 6 5.3318 -1.8151 -3.8980
20 7 6.4795 -2.1898 -3.3984
21 14 5.1057 -1.7198 -5.7499
22 1 4.7554 -0.3290 -6.1348
23 1 6.3682 -2.1162 -6.4237
24 1 4.0141 -2.6378 -6.1632
25 6 2.0852 -0.8066 -1.2004
26 1 -0.3634 -1.0267 0.0437
27 1 -0.3633 0.5513 0.8672
28 1 -0.3633 0.4754 -0.9111
29 1 2.1922 -0.1701 2.0795
30 1 1.4467 -1.6633 1.4208
31 1 2.5147 -3.5855 -0.3266
32 1 2.9661 -5.8797 0.4431
33 1 4.4342 -6.2620 2.3824
34 1 5.0135 -2.0504 2.7697
35 1 7.2143 -2.4180 -3.9891
36 1 1.4518 -1.6703 -1.4025
37 1 2.1541 -0.1724 -2.0842
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000187320045.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:45:00
Heat of formation + Delta-G solvation = -80.833642 kcal
Electronic energy + Delta-G solvation = -21715.284833 eV
Core-core repulsion = 18370.700977 eV
Total energy + Delta-G solvation = -3344.583856 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.122 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-49.91848 -41.09143 -39.17282 -37.76797 -34.67195 -33.56251 -32.80674 -31.40393
-29.65139 -28.12697 -26.88054 -24.54368 -23.70699 -22.73639 -21.22170 -20.60767
-18.69558 -17.99397 -17.80474 -17.26939 -17.12313 -16.62845 -16.56874 -15.95506
-15.48772 -14.89350 -14.74397 -14.55934 -14.25190 -14.04893 -13.91170 -13.39618
-13.32506 -13.12875 -13.05715 -12.76350 -12.71412 -12.61484 -12.32749 -12.10605
-12.04345 -11.78659 -11.49762 -11.44809 -10.91625 -9.97799 -9.77145 -9.56521
-9.07318 -8.27657 -6.83079 0.22294 0.28208 1.38405 1.41680 1.52956
2.22314 2.47426 2.58369 2.92398 3.25188 3.55738 3.65210 3.80366
3.85245 3.92393 4.09175 4.13867 4.30185 4.40075 4.45877 4.63763
4.69674 4.86622 4.89210 4.93052 5.03853 5.09183 5.12739 5.14651
5.22376 5.33616 5.34961 5.39676 5.52728 5.62365 5.67657 5.97016
6.06636 6.44670 6.88493 7.52608 8.50479 8.69783
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.014201 B = 0.006901 C = 0.005177
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1971.203448 B = 4056.337003 C = 5407.164062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.097 4.097
3 H 0.080 0.920
4 C -0.103 4.103
5 C 0.170 3.830
6 H 0.045 0.955
7 C -0.050 4.050
8 C -0.119 4.119
9 C -0.092 4.092
10 C -0.162 4.162
11 C 0.079 3.921
12 F -0.147 7.147
13 C -0.162 4.162
14 N -0.641 5.641
15 C 0.560 3.440
16 O -0.621 6.621
17 C -0.566 4.566
18 H 0.086 0.914
19 C 0.031 3.969
20 N -0.821 5.821
21 Si 0.992 3.008
22 H -0.254 1.254
23 H -0.276 1.276
24 H -0.253 1.253
25 C 0.114 3.886
26 H 0.060 0.940
27 H 0.074 0.926
28 H 0.064 0.936
29 H 0.097 0.903
30 H 0.086 0.914
31 H 0.119 0.881
32 H 0.157 0.843
33 H 0.158 0.842
34 H 0.132 0.868
35 H 0.272 0.728
36 H 0.057 0.943
37 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.244 -0.133 7.105 15.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.116 4.116
3 H 0.099 0.901
4 C -0.140 4.140
5 C 0.066 3.934
6 H 0.063 0.937
7 C -0.052 4.052
8 C -0.138 4.138
9 C -0.110 4.110
10 C -0.180 4.180
11 C 0.060 3.940
12 F -0.126 7.126
13 C -0.181 4.181
14 N -0.378 5.378
15 C 0.366 3.634
16 O -0.507 6.507
17 C -0.602 4.602
18 H 0.104 0.896
19 C -0.184 4.184
20 N -0.451 5.451
21 Si 0.811 3.189
22 H -0.178 1.178
23 H -0.201 1.201
24 H -0.177 1.177
25 C -0.009 4.009
26 H 0.079 0.921
27 H 0.093 0.907
28 H 0.083 0.917
29 H 0.116 0.884
30 H 0.104 0.896
31 H 0.137 0.863
32 H 0.175 0.825
33 H 0.176 0.824
34 H 0.150 0.850
35 H 0.082 0.918
36 H 0.076 0.924
37 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -12.388 -0.394 7.320 14.394
hybrid contribution 0.920 -0.001 -0.607 1.102
sum -11.468 -0.394 6.713 13.294
Atomic orbital electron populations
1.21636 0.91526 1.02669 1.02938 1.22371 0.97588 0.98595 0.93047
0.90123 1.22722 0.92154 1.00575 0.98596 1.20368 0.98967 0.91149
0.82948 0.93699 1.20182 0.94624 0.97011 0.93335 1.21101 1.00745
0.92731 0.99216 1.21279 0.97057 0.97324 0.95353 1.21322 0.99927
0.98962 0.97803 1.17798 0.94272 0.94626 0.87273 1.91442 1.71392
1.95811 1.53949 1.21036 1.01375 0.96156 0.99547 1.48609 1.13195
1.72053 1.03938 1.18269 0.81278 0.76506 0.87353 1.90582 1.28240
1.53864 1.78017 1.21357 1.00245 1.48974 0.89636 0.89637 1.26923
0.93648 0.91564 1.06288 1.70192 1.03152 1.33270 1.38496 0.85161
0.78565 0.80144 0.75025 1.17838 1.20134 1.17706 1.22250 0.83176
0.97595 0.97881 0.92064 0.90710 0.91678 0.88410 0.89551 0.86313
0.82515 0.82440 0.84979 0.91771 0.92445 0.92038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.26 9.29 71.98 0.67 -1.59 16
2 C -0.10 -2.40 3.64 -9.40 -0.03 -2.44 16
3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
4 C -0.10 -2.68 5.93 31.78 0.19 -2.49 16
5 C 0.17 6.50 3.05 44.59 0.14 6.63 16
6 H 0.04 1.88 8.03 -2.39 -0.02 1.86 16
7 C -0.05 -1.94 4.09 -19.87 -0.08 -2.02 16
8 C -0.12 -4.43 9.13 22.27 0.20 -4.22 16
9 C -0.09 -2.92 10.04 22.26 0.22 -2.70 16
10 C -0.16 -5.01 10.03 22.31 0.22 -4.78 16
11 C 0.08 2.78 7.30 22.38 0.16 2.95 16
12 F -0.15 -5.00 17.27 44.97 0.78 -4.22 16
13 C -0.16 -6.05 9.66 22.31 0.22 -5.83 16
14 N -0.64 -28.61 2.33 -797.24 -1.85 -30.46 16
15 C 0.56 32.27 7.42 86.36 0.64 32.91 16
16 O -0.62 -41.68 14.86 -4.29 -0.06 -41.75 16
17 C -0.57 -31.87 8.98 24.83 0.22 -31.65 16
18 H 0.09 4.34 6.64 -2.91 -0.02 4.32 16
19 C 0.03 1.72 5.50 85.31 0.47 2.19 16
20 N -0.82 -50.68 11.83 21.84 0.26 -50.42 16
21 Si 0.99 40.96 29.56 68.60 2.03 42.99 16
22 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16
23 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16
24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16
25 C 0.11 3.88 5.99 86.86 0.52 4.40 16
26 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16
27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16
30 H 0.09 2.06 7.67 -2.38 -0.02 2.04 16
31 H 0.12 4.46 7.69 -2.91 -0.02 4.44 16
32 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16
33 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16
34 H 0.13 4.62 8.05 -2.91 -0.02 4.59 16
35 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16
36 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16
37 H 0.06 2.18 7.14 -2.39 -0.02 2.17 16
Total: -1.00 -76.54 315.56 5.97 -70.57
By element:
Atomic # 1 Polarization: 20.89 SS G_CDS: 1.07 Total: 21.96 kcal
Atomic # 6 Polarization: -12.41 SS G_CDS: 3.76 Total: -8.65 kcal
Atomic # 7 Polarization: -79.29 SS G_CDS: -1.60 Total: -80.89 kcal
Atomic # 8 Polarization: -41.68 SS G_CDS: -0.06 Total: -41.75 kcal
Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.22 kcal
Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal
Total: -76.54 5.97 -70.57 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187320045.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.267 kcal
(2) G-P(sol) polarization free energy of solvation -76.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.834 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds