Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.91814 * 2 1 4 4 C 1.55151 * 111.00550 * 123.90703 * 2 1 3 5 5 C 1.54318 * 102.94375 * 153.57418 * 4 2 1 6 6 H 1.09004 * 110.01049 * 97.29730 * 5 4 2 7 7 C 1.50703 * 109.88480 * 218.38962 * 5 4 2 8 8 C 1.38265 * 119.98622 * 78.98389 * 7 5 4 9 9 C 1.38227 * 120.05074 * 179.77233 * 8 7 5 10 10 C 1.38219 * 120.02365 * 0.50650 * 9 8 7 11 11 C 1.38436 * 119.97603 * 359.75156 * 10 9 8 12 12 F 1.35099 * 120.02897 * 179.97438 * 11 10 9 13 13 C 1.38171 * 119.98744 * 259.26554 * 7 5 4 14 14 N 1.47017 * 107.27230 * 337.80338 * 5 4 2 15 15 C 1.34784 * 125.64909 * 178.90166 * 14 5 4 16 16 O 1.21683 * 119.99753 * 0.02562 * 15 14 5 17 17 C 1.46372 * 119.99621 * 180.02562 * 15 14 5 18 18 H 1.08001 * 120.00406 * 359.97438 * 17 15 14 19 19 C 1.40051 * 119.99461 * 180.02562 * 17 15 14 20 20 N 1.30666 * 120.00375 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 119.99762 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46880 * 60.00309 * 21 19 17 23 23 H 1.48500 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47102 * 299.99845 * 21 19 17 25 25 C 1.47421 * 108.70491 * 358.94381 * 14 5 4 26 26 H 1.08997 * 109.47419 * 182.44000 * 1 2 3 27 27 H 1.08994 * 109.47216 * 302.44818 * 1 2 3 28 28 H 1.09000 * 109.47149 * 62.44521 * 1 2 3 29 29 H 1.08998 * 110.71811 * 271.93936 * 4 2 1 30 30 H 1.09005 * 110.72107 * 35.20878 * 4 2 1 31 31 H 1.08004 * 119.97892 * 0.02562 * 8 7 5 32 32 H 1.07999 * 119.98872 * 180.25525 * 9 8 7 33 33 H 1.07998 * 120.01584 * 179.76853 * 10 9 8 34 34 H 1.08000 * 120.01491 * 359.95118 * 13 7 5 35 35 H 0.97003 * 120.00238 * 180.02562 * 20 19 17 36 36 H 1.09001 * 110.36853 * 265.29067 * 25 14 5 37 37 H 1.08995 * 110.46528 * 143.00769 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0861 -0.8080 1.2021 5 6 3.4674 -1.2742 0.6959 6 1 4.2444 -0.6019 1.0597 7 6 3.7406 -2.6779 1.1714 8 6 3.1619 -3.7525 0.5217 9 6 3.4153 -5.0408 0.9538 10 6 4.2393 -5.2556 2.0426 11 6 4.8150 -4.1801 2.6972 12 9 5.6201 -4.3888 3.7618 13 6 4.5646 -2.8901 2.2600 14 7 3.4270 -1.2431 -0.7734 15 6 4.4480 -1.5603 -1.5942 16 8 5.5169 -1.9092 -1.1288 17 6 4.2710 -1.4850 -3.0452 18 1 3.3222 -1.1758 -3.4582 19 6 5.3318 -1.8151 -3.8980 20 7 6.4795 -2.1898 -3.3984 21 14 5.1057 -1.7198 -5.7499 22 1 4.7554 -0.3290 -6.1348 23 1 6.3682 -2.1162 -6.4237 24 1 4.0141 -2.6378 -6.1632 25 6 2.0852 -0.8066 -1.2004 26 1 -0.3634 -1.0267 0.0437 27 1 -0.3633 0.5513 0.8672 28 1 -0.3633 0.4754 -0.9111 29 1 2.1922 -0.1701 2.0795 30 1 1.4467 -1.6633 1.4208 31 1 2.5147 -3.5855 -0.3266 32 1 2.9661 -5.8797 0.4431 33 1 4.4342 -6.2620 2.3824 34 1 5.0135 -2.0504 2.7697 35 1 7.2143 -2.4180 -3.9891 36 1 1.4518 -1.6703 -1.4025 37 1 2.1541 -0.1724 -2.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187320045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -80.833642 kcal Electronic energy + Delta-G solvation = -21715.284833 eV Core-core repulsion = 18370.700977 eV Total energy + Delta-G solvation = -3344.583856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91848 -41.09143 -39.17282 -37.76797 -34.67195 -33.56251 -32.80674 -31.40393 -29.65139 -28.12697 -26.88054 -24.54368 -23.70699 -22.73639 -21.22170 -20.60767 -18.69558 -17.99397 -17.80474 -17.26939 -17.12313 -16.62845 -16.56874 -15.95506 -15.48772 -14.89350 -14.74397 -14.55934 -14.25190 -14.04893 -13.91170 -13.39618 -13.32506 -13.12875 -13.05715 -12.76350 -12.71412 -12.61484 -12.32749 -12.10605 -12.04345 -11.78659 -11.49762 -11.44809 -10.91625 -9.97799 -9.77145 -9.56521 -9.07318 -8.27657 -6.83079 0.22294 0.28208 1.38405 1.41680 1.52956 2.22314 2.47426 2.58369 2.92398 3.25188 3.55738 3.65210 3.80366 3.85245 3.92393 4.09175 4.13867 4.30185 4.40075 4.45877 4.63763 4.69674 4.86622 4.89210 4.93052 5.03853 5.09183 5.12739 5.14651 5.22376 5.33616 5.34961 5.39676 5.52728 5.62365 5.67657 5.97016 6.06636 6.44670 6.88493 7.52608 8.50479 8.69783 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.006901 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.203448 B = 4056.337003 C = 5407.164062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 H 0.080 0.920 4 C -0.103 4.103 5 C 0.170 3.830 6 H 0.045 0.955 7 C -0.050 4.050 8 C -0.119 4.119 9 C -0.092 4.092 10 C -0.162 4.162 11 C 0.079 3.921 12 F -0.147 7.147 13 C -0.162 4.162 14 N -0.641 5.641 15 C 0.560 3.440 16 O -0.621 6.621 17 C -0.566 4.566 18 H 0.086 0.914 19 C 0.031 3.969 20 N -0.821 5.821 21 Si 0.992 3.008 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.253 1.253 25 C 0.114 3.886 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.272 0.728 36 H 0.057 0.943 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.244 -0.133 7.105 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.140 4.140 5 C 0.066 3.934 6 H 0.063 0.937 7 C -0.052 4.052 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.180 4.180 11 C 0.060 3.940 12 F -0.126 7.126 13 C -0.181 4.181 14 N -0.378 5.378 15 C 0.366 3.634 16 O -0.507 6.507 17 C -0.602 4.602 18 H 0.104 0.896 19 C -0.184 4.184 20 N -0.451 5.451 21 Si 0.811 3.189 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.177 1.177 25 C -0.009 4.009 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.388 -0.394 7.320 14.394 hybrid contribution 0.920 -0.001 -0.607 1.102 sum -11.468 -0.394 6.713 13.294 Atomic orbital electron populations 1.21636 0.91526 1.02669 1.02938 1.22371 0.97588 0.98595 0.93047 0.90123 1.22722 0.92154 1.00575 0.98596 1.20368 0.98967 0.91149 0.82948 0.93699 1.20182 0.94624 0.97011 0.93335 1.21101 1.00745 0.92731 0.99216 1.21279 0.97057 0.97324 0.95353 1.21322 0.99927 0.98962 0.97803 1.17798 0.94272 0.94626 0.87273 1.91442 1.71392 1.95811 1.53949 1.21036 1.01375 0.96156 0.99547 1.48609 1.13195 1.72053 1.03938 1.18269 0.81278 0.76506 0.87353 1.90582 1.28240 1.53864 1.78017 1.21357 1.00245 1.48974 0.89636 0.89637 1.26923 0.93648 0.91564 1.06288 1.70192 1.03152 1.33270 1.38496 0.85161 0.78565 0.80144 0.75025 1.17838 1.20134 1.17706 1.22250 0.83176 0.97595 0.97881 0.92064 0.90710 0.91678 0.88410 0.89551 0.86313 0.82515 0.82440 0.84979 0.91771 0.92445 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.29 71.98 0.67 -1.59 16 2 C -0.10 -2.40 3.64 -9.40 -0.03 -2.44 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.10 -2.68 5.93 31.78 0.19 -2.49 16 5 C 0.17 6.50 3.05 44.59 0.14 6.63 16 6 H 0.04 1.88 8.03 -2.39 -0.02 1.86 16 7 C -0.05 -1.94 4.09 -19.87 -0.08 -2.02 16 8 C -0.12 -4.43 9.13 22.27 0.20 -4.22 16 9 C -0.09 -2.92 10.04 22.26 0.22 -2.70 16 10 C -0.16 -5.01 10.03 22.31 0.22 -4.78 16 11 C 0.08 2.78 7.30 22.38 0.16 2.95 16 12 F -0.15 -5.00 17.27 44.97 0.78 -4.22 16 13 C -0.16 -6.05 9.66 22.31 0.22 -5.83 16 14 N -0.64 -28.61 2.33 -797.24 -1.85 -30.46 16 15 C 0.56 32.27 7.42 86.36 0.64 32.91 16 16 O -0.62 -41.68 14.86 -4.29 -0.06 -41.75 16 17 C -0.57 -31.87 8.98 24.83 0.22 -31.65 16 18 H 0.09 4.34 6.64 -2.91 -0.02 4.32 16 19 C 0.03 1.72 5.50 85.31 0.47 2.19 16 20 N -0.82 -50.68 11.83 21.84 0.26 -50.42 16 21 Si 0.99 40.96 29.56 68.60 2.03 42.99 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 C 0.11 3.88 5.99 86.86 0.52 4.40 16 26 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.06 7.67 -2.38 -0.02 2.04 16 31 H 0.12 4.46 7.69 -2.91 -0.02 4.44 16 32 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 34 H 0.13 4.62 8.05 -2.91 -0.02 4.59 16 35 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 36 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 37 H 0.06 2.18 7.14 -2.39 -0.02 2.17 16 Total: -1.00 -76.54 315.56 5.97 -70.57 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.07 Total: 21.96 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 3.76 Total: -8.65 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.60 Total: -80.89 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.06 Total: -41.75 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -76.54 5.97 -70.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187320045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.267 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds