Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47407 * 2 1 4 4 S 1.65605 * 119.99845 * 165.00112 * 3 2 1 5 5 O 1.42102 * 106.40175 * 311.46335 * 4 3 2 6 6 O 1.42094 * 106.40093 * 178.54138 * 4 3 2 7 7 N 1.65599 * 107.21703 * 65.00177 * 4 3 2 8 8 C 1.46500 * 119.99960 * 64.99803 * 7 4 3 9 9 C 1.53076 * 109.43981 * 94.79563 * 8 7 4 10 10 C 1.53183 * 109.29478 * 181.23571 * 9 8 7 11 11 N 1.46930 * 108.89468 * 305.57480 * 10 9 8 12 12 C 1.36937 * 120.63259 * 233.51494 * 11 10 9 13 13 H 1.08000 * 119.99761 * 151.83401 * 12 11 10 14 14 C 1.38806 * 120.00219 * 331.83653 * 12 11 10 15 15 N 1.31624 * 120.00191 * 343.07619 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 163.07294 * 14 12 11 17 17 H 1.48506 * 109.46812 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47258 * 119.99807 * 16 14 12 19 19 H 1.48499 * 109.47344 * 240.00342 * 16 14 12 20 20 C 1.46925 * 118.73328 * 53.53726 * 11 10 9 21 21 C 1.53033 * 109.45902 * 214.99582 * 8 7 4 22 22 H 1.08998 * 109.47545 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46603 * 300.00187 * 1 2 3 24 24 H 1.08999 * 109.47038 * 59.99825 * 1 2 3 25 25 H 1.09004 * 109.46603 * 239.99813 * 2 1 3 26 26 H 1.09000 * 109.46614 * 120.00504 * 2 1 3 27 27 H 0.96995 * 119.99807 * 345.00329 * 3 2 1 28 28 H 0.97003 * 119.99782 * 244.99917 * 7 4 3 29 29 H 1.08994 * 109.45870 * 334.97520 * 8 7 4 30 30 H 1.09005 * 109.39190 * 61.35477 * 9 8 7 31 31 H 1.09004 * 109.62337 * 301.25270 * 9 8 7 32 32 H 1.09005 * 109.58619 * 185.72200 * 10 9 8 33 33 H 1.08998 * 109.58733 * 65.43770 * 10 9 8 34 34 H 0.96995 * 120.00379 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.58688 * 66.18006 * 20 11 10 36 36 H 1.08996 * 109.58570 * 186.45714 * 20 11 10 37 37 H 1.09003 * 109.49897 * 58.68032 * 21 8 7 38 38 H 1.09000 * 109.52987 * 298.59684 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6005 1.6999 0.3712 5 8 3.8850 0.9830 1.5646 6 8 3.7653 3.1062 0.2513 7 7 4.5300 1.0172 -0.8172 8 6 4.4430 1.5154 -2.1922 9 6 5.5431 2.5532 -2.4286 10 6 5.4299 3.0943 -3.8572 11 7 5.4501 1.9649 -4.7968 12 6 6.3456 1.9347 -5.8323 13 1 6.6836 0.9877 -6.2264 14 6 6.8191 3.1211 -6.3753 15 7 6.1839 4.2505 -6.1440 16 14 8.3579 3.1151 -7.4343 17 1 8.8797 1.7288 -7.5413 18 1 8.0282 3.6252 -8.7894 19 1 9.3887 3.9861 -6.8147 20 6 4.4907 0.8689 -4.6045 21 6 4.6163 0.3499 -3.1686 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.4151 2.1089 -0.2174 28 1 5.1320 0.2874 -0.6029 29 1 3.4692 1.9792 -2.3494 30 1 6.5179 2.0845 -2.2932 31 1 5.4315 3.3731 -1.7190 32 1 6.2701 3.7571 -4.0645 33 1 4.4951 3.6441 -3.9667 34 1 6.5145 5.0795 -6.5237 35 1 3.4782 1.2357 -4.7731 36 1 4.7095 0.0644 -5.3066 37 1 3.8451 -0.3978 -2.9833 38 1 5.5996 -0.0993 -3.0290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227655651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = -67.557381 kcal Electronic energy + Delta-G solvation = -20696.076616 eV Core-core repulsion = 17507.432374 eV Total energy + Delta-G solvation = -3188.644242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.03699 -37.09643 -35.97860 -35.74960 -34.59820 -31.89984 -29.99967 -29.89488 -29.14359 -24.85895 -23.10777 -22.21204 -21.92101 -19.97793 -19.32724 -17.94233 -17.31622 -16.79093 -16.28673 -15.48240 -14.96302 -14.78172 -14.39352 -13.82531 -13.54049 -13.40545 -13.09018 -12.94391 -12.88602 -12.19448 -12.07836 -11.96898 -11.90957 -11.85502 -11.57235 -11.42738 -11.06084 -11.02751 -10.74712 -10.51265 -10.23986 -10.22785 -9.84586 -9.70134 -9.55347 -9.04456 -8.46525 -6.70293 -5.80276 -3.23375 0.70869 2.95171 3.36860 3.44874 3.46646 3.64896 4.48296 4.52510 4.73829 4.86946 5.01524 5.09810 5.27641 5.36180 5.44755 5.54997 5.59476 5.65824 5.70881 5.76631 5.94024 6.06593 6.22238 6.40092 6.52821 6.63551 6.73611 6.80161 6.86192 6.89242 7.16813 7.38206 7.66594 7.78816 8.43685 9.19456 9.82666 10.38796 11.28294 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.004525 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.479154 B = 6186.546535 C = 6514.039629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -1.130 6.130 4 S 2.788 3.212 5 O -0.991 6.991 6 O -0.975 6.975 7 N -1.122 6.122 8 C 0.163 3.837 9 C -0.157 4.157 10 C 0.171 3.829 11 N -0.592 5.592 12 C -0.255 4.255 13 H 0.066 0.934 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.146 3.854 21 C -0.136 4.136 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.416 0.584 28 H 0.412 0.588 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.020 0.980 34 H 0.254 0.746 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -8.690 11.174 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.012 4.012 3 N -0.892 5.892 4 S 2.794 3.206 5 O -0.975 6.975 6 O -0.958 6.958 7 N -0.883 5.883 8 C 0.058 3.942 9 C -0.198 4.198 10 C 0.045 3.955 11 N -0.315 5.315 12 C -0.384 4.384 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.545 5.545 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.019 3.981 21 C -0.177 4.177 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.249 0.751 28 H 0.246 0.754 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.296 -8.050 11.876 17.095 hybrid contribution 0.609 -0.134 -0.907 1.101 sum -8.686 -8.183 10.968 16.209 Atomic orbital electron populations 1.21956 0.94288 1.02816 1.02731 1.21189 0.96250 0.81767 1.01969 1.55963 1.30108 1.14505 1.88583 1.01763 0.72560 0.73424 0.72836 1.93593 1.84356 1.74774 1.44746 1.93651 1.84829 1.30660 1.86694 1.56015 1.57352 1.51825 1.23075 1.20777 0.99570 0.95256 0.78646 1.22740 0.97964 0.97932 1.01184 1.20786 1.01335 0.89734 0.83669 1.44106 1.37274 1.20309 1.29821 1.19209 1.17155 0.92278 1.09780 0.91624 1.25055 0.99635 0.96309 0.98540 1.70034 1.38490 0.98460 1.47555 0.86237 0.83240 0.77562 0.79782 1.20273 1.21734 1.21536 1.20873 0.92892 0.91986 0.92352 1.22344 1.01447 0.96358 0.97533 0.91147 0.91971 0.91812 0.91664 0.90639 0.75091 0.75433 0.90733 0.92168 0.91781 0.89141 0.96142 0.93601 0.96353 0.92384 0.92669 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 10.05 37.16 0.37 -0.67 16 2 C 0.11 0.96 6.97 -4.04 -0.03 0.93 16 3 N -1.13 -11.48 6.05 -10.61 -0.06 -11.55 16 4 S 2.79 37.70 6.09 -107.50 -0.65 37.05 16 5 O -0.99 -15.54 17.61 -57.17 -1.01 -16.55 16 6 O -0.98 -16.77 17.37 -57.17 -0.99 -17.76 16 7 N -1.12 -14.65 5.53 -4.84 -0.03 -14.68 16 8 C 0.16 2.58 2.63 -67.87 -0.18 2.40 16 9 C -0.16 -3.04 5.70 -26.60 -0.15 -3.19 16 10 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 11 N -0.59 -14.37 3.00 -172.33 -0.52 -14.89 16 12 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 13 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 14 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 15 N -0.90 -25.95 11.20 55.49 0.62 -25.32 16 16 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 21 C -0.14 -2.11 5.61 -26.62 -0.15 -2.26 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 27 H 0.42 3.66 8.65 -34.48 -0.30 3.37 16 28 H 0.41 4.66 8.84 -34.47 -0.30 4.36 16 29 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.24 7.61 -51.93 -0.40 0.85 16 32 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -33.27 319.33 -9.16 -42.43 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.90 Total: 2.92 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.41 Total: -2.89 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.01 Total: -66.44 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -2.00 Total: -34.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 37.70 SS G_CDS: -0.65 Total: 37.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.27 -9.16 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227655651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.127 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds