Wall clock time and date at job start Mon Mar 30 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00343 * 2 1 4 4 C 1.50693 * 109.47371 * 275.00022 * 3 2 1 5 5 H 1.08007 * 119.99876 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00110 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00101 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00179 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47107 * 89.99261 * 8 6 4 10 10 H 1.48501 * 109.47304 * 209.99655 * 8 6 4 11 11 H 1.48503 * 109.47003 * 329.99759 * 8 6 4 12 12 S 1.65603 * 119.99773 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40125 * 156.46290 * 12 2 1 14 14 O 1.42102 * 106.40499 * 23.53952 * 12 2 1 15 15 N 1.65602 * 107.21571 * 269.99988 * 12 2 1 16 16 C 1.46497 * 119.99910 * 65.00304 * 15 12 2 17 17 H 1.08999 * 109.47381 * 334.99484 * 16 15 12 18 18 C 1.52999 * 109.46907 * 214.99817 * 16 15 12 19 19 N 1.46894 * 109.47367 * 55.00007 * 18 16 15 20 20 C 1.53003 * 109.47329 * 94.99998 * 16 15 12 21 21 C 1.53001 * 117.51964 * 116.28255 * 20 16 15 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 16 23 23 H 1.08994 * 109.47411 * 269.99687 * 1 2 3 24 24 H 1.08998 * 109.46880 * 30.00147 * 1 2 3 25 25 H 1.09004 * 109.47009 * 149.99656 * 1 2 3 26 26 H 1.08998 * 109.46723 * 35.00111 * 3 2 1 27 27 H 1.09000 * 109.46879 * 154.99872 * 3 2 1 28 28 H 0.97001 * 120.00073 * 180.02562 * 7 6 4 29 29 H 0.97005 * 120.00103 * 245.00113 * 15 12 2 30 30 H 1.09005 * 109.46891 * 175.00062 * 18 16 15 31 31 H 1.09006 * 109.47150 * 294.99492 * 18 16 15 32 32 H 1.00903 * 111.00382 * 56.04195 * 19 18 16 33 33 H 1.00903 * 111.00456 * 180.02562 * 19 18 16 34 34 H 1.09002 * 115.54973 * 330.58039 * 20 16 15 35 35 H 1.09001 * 117.49733 * 214.97413 * 21 20 16 36 36 H 1.08995 * 117.49577 * 359.97438 * 21 20 16 37 37 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 38 38 H 1.09004 * 117.49681 * 107.48417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4153 5 1 1.9290 1.1934 -2.2332 6 6 2.9999 2.9508 -1.6662 7 7 3.1251 3.3848 -2.9014 8 14 3.7141 3.9401 -0.2518 9 1 5.1113 3.5051 0.0007 10 1 3.7003 5.3835 -0.6006 11 1 2.8983 3.7181 0.9691 12 16 2.2929 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5449 14 8 1.4113 -2.4063 -0.5455 15 7 2.5380 -1.8594 1.5810 16 6 1.3945 -2.1789 2.4392 17 1 0.5030 -1.6819 2.0566 18 6 1.6755 -1.6966 3.8637 19 7 2.0082 -0.2661 3.8397 20 6 1.1706 -3.6924 2.4480 21 6 1.3470 -4.4254 3.7794 22 6 -0.0536 -4.2211 3.1983 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6502 2.0042 0.5895 27 1 3.1858 1.1175 0.4343 28 1 3.5886 4.2184 -3.0779 29 1 3.4387 -1.8969 1.9392 30 1 0.7914 -1.8538 4.4816 31 1 2.5131 -2.2576 4.2786 32 1 1.2740 0.2686 3.4003 33 1 2.1986 0.0766 4.7695 34 1 1.4704 -4.2173 1.5410 35 1 1.7629 -5.4325 3.7482 36 1 1.6230 -3.8294 4.6492 37 1 -0.6992 -3.4907 3.6859 38 1 -0.5591 -5.0938 2.7848 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237194843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:49 Heat of formation + Delta-G solvation = -73.238602 kcal Electronic energy + Delta-G solvation = -21042.441550 eV Core-core repulsion = 17853.550952 eV Total energy + Delta-G solvation = -3188.890598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69344 -38.20374 -37.24090 -36.81610 -35.74664 -34.47178 -33.76245 -30.23964 -28.13325 -26.74415 -24.50220 -23.78419 -23.05506 -20.83680 -20.41294 -19.14129 -18.60727 -18.16056 -17.67634 -17.13120 -16.76818 -16.10545 -15.47432 -15.34225 -15.03957 -14.75741 -14.57105 -14.43703 -14.36296 -14.02484 -13.37638 -13.15397 -13.10537 -13.01136 -12.94248 -12.76618 -12.46672 -12.32689 -12.19818 -12.05521 -11.90432 -11.67546 -11.33576 -10.84134 -10.75479 -10.38926 -9.71134 -9.44169 -8.26263 -6.31795 -0.27896 1.39474 1.44452 1.52617 2.08103 2.38700 2.67559 2.94150 3.08384 3.49671 3.58984 3.76463 4.03579 4.05446 4.13106 4.20410 4.28314 4.48403 4.66397 4.70910 4.76434 4.84172 4.87057 4.93764 5.06061 5.09812 5.20406 5.31484 5.34045 5.41681 5.53117 5.77874 6.20975 6.34067 6.38443 6.70006 6.71296 7.31338 8.91537 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.006029 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.656753 B = 4643.109086 C = 5103.376346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.994 5.994 3 C 0.242 3.758 4 C -0.544 4.544 5 H 0.024 0.976 6 C 0.005 3.995 7 N -0.952 5.952 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.224 1.224 12 S 2.796 3.204 13 O -1.018 7.018 14 O -1.012 7.012 15 N -1.094 6.094 16 C 0.183 3.817 17 H 0.083 0.917 18 C 0.063 3.937 19 N -0.859 5.859 20 C -0.191 4.191 21 C -0.170 4.170 22 C -0.168 4.168 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.267 0.733 29 H 0.421 0.579 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.343 0.657 33 H 0.353 0.647 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 -11.163 21.385 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.835 5.835 3 C 0.117 3.883 4 C -0.583 4.583 5 H 0.043 0.957 6 C -0.192 4.192 7 N -0.592 5.592 8 Si 0.769 3.231 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.146 1.146 12 S 2.804 3.196 13 O -1.002 7.002 14 O -0.996 6.996 15 N -0.856 5.856 16 C 0.075 3.925 17 H 0.101 0.899 18 C -0.069 4.069 19 N -0.391 5.391 20 C -0.212 4.212 21 C -0.206 4.206 22 C -0.205 4.205 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.097 -11.722 19.992 23.963 hybrid contribution -0.041 0.806 0.321 0.868 sum -6.138 -10.916 20.313 23.863 Atomic orbital electron populations 1.21626 0.78117 1.03423 1.02680 1.57229 1.15491 1.21371 1.89439 1.19118 0.91927 0.82352 0.94853 1.21785 1.36197 1.06673 0.93669 0.95738 1.25964 0.95785 0.98702 0.98797 1.70087 1.44272 1.22929 1.21910 0.85736 0.79747 0.77331 0.80298 1.19835 1.20644 1.14640 1.01233 0.71942 0.72659 0.73745 1.93565 1.43290 1.85488 1.77871 1.93506 1.67787 1.60170 1.78090 1.55549 1.15681 1.84460 1.29881 1.20406 0.87373 0.92727 0.91952 0.89885 1.22165 1.01230 0.89820 0.93728 1.58527 1.50627 1.03167 1.26782 1.22795 1.05939 0.95109 0.97374 1.23232 0.99464 1.01832 0.96101 1.23066 0.90972 1.03504 1.03003 0.89888 0.91240 0.91440 0.92372 0.95002 0.92445 0.74313 0.92155 0.89313 0.84401 0.83250 0.89318 0.88564 0.86528 0.87195 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.72 10.09 127.77 1.29 4.01 16 2 N -0.99 -38.99 3.23 -543.25 -1.75 -40.74 16 3 C 0.24 11.11 4.15 85.63 0.36 11.47 16 4 C -0.54 -32.08 9.94 25.60 0.25 -31.83 16 5 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 6 C 0.00 0.29 5.47 84.65 0.46 0.75 16 7 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 8 Si 0.95 43.29 27.47 68.60 1.88 45.17 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.22 -8.74 6.54 99.48 0.65 -8.09 16 12 S 2.80 109.86 6.01 -56.49 -0.34 109.52 16 13 O -1.02 -50.52 17.11 -128.00 -2.19 -52.71 16 14 O -1.01 -42.28 16.50 -128.00 -2.11 -44.39 16 15 N -1.09 -29.87 5.25 -169.39 -0.89 -30.76 16 16 C 0.18 3.77 2.80 44.99 0.13 3.90 16 17 H 0.08 1.70 6.61 -2.39 -0.02 1.68 16 18 C 0.06 0.90 4.99 86.30 0.43 1.33 16 19 N -0.86 -13.97 9.35 -186.72 -1.75 -15.72 16 20 C -0.19 -3.81 6.00 -10.79 -0.06 -3.88 16 21 C -0.17 -2.31 9.50 30.59 0.29 -2.02 16 22 C -0.17 -2.43 10.00 30.60 0.31 -2.13 16 23 H 0.08 1.81 7.41 -2.39 -0.02 1.80 16 24 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 25 H 0.07 2.12 7.02 -2.38 -0.02 2.10 16 26 H 0.06 2.38 7.17 -2.39 -0.02 2.36 16 27 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16 28 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.42 10.57 8.84 -96.74 -0.85 9.72 16 30 H 0.06 0.60 7.59 -2.38 -0.02 0.59 16 31 H 0.09 1.17 6.87 -2.38 -0.02 1.15 16 32 H 0.34 5.68 8.99 -89.69 -0.81 4.87 16 33 H 0.35 4.25 9.08 -89.69 -0.81 3.43 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 1.18 5.80 -2.39 -0.01 1.16 16 37 H 0.11 1.23 7.98 -2.39 -0.02 1.21 16 38 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -80.27 321.81 -4.83 -85.10 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -1.43 Total: 23.79 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.45 Total: -18.40 kcal Atomic # 7 Polarization: -144.00 SS G_CDS: -4.09 Total: -148.09 kcal Atomic # 8 Polarization: -92.80 SS G_CDS: -4.30 Total: -97.10 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Atomic # 16 Polarization: 109.86 SS G_CDS: -0.34 Total: 109.52 kcal Total: -80.27 -4.83 -85.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.860 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds