Wall clock time and date at job start Mon Mar 30 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00049 * 2 1 4 4 C 1.50699 * 109.47175 * 274.99997 * 3 2 1 5 5 H 1.08005 * 119.99949 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99889 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00079 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99933 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47504 * 90.00020 * 8 6 4 10 10 H 1.48498 * 109.47023 * 210.00094 * 8 6 4 11 11 H 1.48502 * 109.47186 * 330.00023 * 8 6 4 12 12 S 1.65600 * 120.00008 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40184 * 156.45861 * 12 2 1 14 14 O 1.42104 * 106.40054 * 23.53819 * 12 2 1 15 15 N 1.65599 * 107.21865 * 269.99975 * 12 2 1 16 16 C 1.46503 * 119.99827 * 64.99661 * 15 12 2 17 17 H 1.09002 * 109.50445 * 24.92418 * 16 15 12 18 18 C 1.53126 * 109.49966 * 145.00152 * 16 15 12 19 19 C 1.53124 * 109.15878 * 177.59467 * 18 16 15 20 20 C 1.53035 * 109.27794 * 302.34791 * 19 18 16 21 21 N 1.46844 * 109.52494 * 59.18054 * 20 19 18 22 22 C 1.46854 * 111.19703 * 298.25280 * 21 20 19 23 23 H 1.09000 * 109.47259 * 270.00208 * 1 2 3 24 24 H 1.09002 * 109.47548 * 29.99813 * 1 2 3 25 25 H 1.09003 * 109.47098 * 149.99738 * 1 2 3 26 26 H 1.08994 * 109.46797 * 35.00029 * 3 2 1 27 27 H 1.09000 * 109.46979 * 155.00039 * 3 2 1 28 28 H 0.96995 * 119.99843 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99917 * 245.00407 * 15 12 2 30 30 H 1.08998 * 109.52297 * 297.50415 * 18 16 15 31 31 H 1.08999 * 109.51925 * 57.69618 * 18 16 15 32 32 H 1.08999 * 109.50059 * 62.28737 * 19 18 16 33 33 H 1.08993 * 109.49981 * 182.40384 * 19 18 16 34 34 H 1.09002 * 109.46466 * 299.16376 * 20 19 18 35 35 H 1.09002 * 109.46192 * 179.19659 * 20 19 18 36 36 H 1.00903 * 110.99984 * 174.16441 * 21 20 19 37 37 H 1.08994 * 109.46310 * 301.73015 * 22 21 20 38 38 H 1.09004 * 109.45830 * 181.75702 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2332 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6474 -0.6705 8 14 3.1775 3.5673 -3.4207 9 1 2.0166 4.4276 -3.7632 10 1 4.4305 4.3546 -3.5441 11 1 3.2268 2.4096 -4.3495 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4112 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5809 16 6 1.3946 -2.1789 2.4392 17 1 0.5603 -2.5153 1.8236 18 6 1.7858 -3.2876 3.4202 19 6 0.6051 -3.5734 4.3525 20 6 0.2144 -2.2862 5.0822 21 7 -0.1518 -1.2574 4.1005 22 6 0.9810 -0.9321 3.2245 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6501 2.0042 0.5894 27 1 3.1857 1.1177 0.4343 28 1 3.9653 4.4814 -0.8470 29 1 3.4387 -1.8968 1.9391 30 1 2.0396 -4.1913 2.8662 31 1 2.6451 -2.9665 4.0089 32 1 -0.2420 -3.9315 3.7674 33 1 0.8919 -4.3319 5.0807 34 1 1.0575 -1.9361 5.6778 35 1 -0.6352 -2.4830 5.7361 36 1 -0.5041 -0.4300 4.5582 37 1 1.8205 -0.5885 3.8288 38 1 0.6881 -0.1455 2.5291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237194915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:45 Heat of formation + Delta-G solvation = -79.442480 kcal Electronic energy + Delta-G solvation = -21016.119508 eV Core-core repulsion = 17826.959890 eV Total energy + Delta-G solvation = -3189.159618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90765 -36.55145 -35.48102 -35.13058 -34.44241 -32.43387 -31.82755 -28.84362 -27.73980 -25.02534 -23.88718 -22.71468 -22.26840 -20.13597 -18.81055 -17.26596 -17.17475 -16.53702 -16.27156 -15.49599 -14.93604 -14.72703 -14.38668 -14.07434 -13.96193 -13.40863 -13.32244 -13.27926 -12.73578 -12.32253 -12.12733 -11.80836 -11.57215 -11.53546 -11.38837 -11.14712 -11.04966 -11.02255 -10.82698 -10.67131 -10.52174 -10.48017 -10.02033 -9.74119 -9.35281 -8.57850 -8.43714 -8.04131 -6.05696 -4.09326 1.26535 3.32442 3.38770 3.44358 3.48885 4.08959 4.22982 4.46030 4.64315 4.74701 4.79282 5.05773 5.08411 5.24130 5.29829 5.40372 5.44580 5.55293 5.67704 5.70418 5.73940 5.82074 5.96438 6.01455 6.18007 6.24529 6.41535 6.59019 6.88853 7.12488 7.22368 7.27459 7.44047 7.63707 7.92296 8.21804 8.93278 9.55943 11.02942 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.005335 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.348540 B = 5246.715000 C = 5629.037843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.995 5.995 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.781 3.219 13 O -0.965 6.965 14 O -0.997 6.997 15 N -1.130 6.130 16 C 0.156 3.844 17 H 0.097 0.903 18 C -0.125 4.125 19 C -0.116 4.116 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.033 3.967 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.411 0.589 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.346 0.654 37 H 0.037 0.963 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 -10.775 12.471 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.838 5.838 3 C 0.137 3.863 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.949 6.949 14 O -0.981 6.981 15 N -0.887 5.887 16 C 0.048 3.952 17 H 0.115 0.885 18 C -0.164 4.164 19 C -0.155 4.155 20 C -0.075 4.075 21 N -0.319 5.319 22 C -0.098 4.098 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.244 0.756 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.055 0.945 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.236 -11.537 11.213 17.255 hybrid contribution 1.049 1.310 0.233 1.694 sum -5.187 -10.228 11.447 16.203 Atomic orbital electron populations 1.21439 0.80128 1.03493 1.00467 1.57588 1.14293 1.23217 1.88723 1.19026 0.90936 0.78751 0.97630 1.21508 1.35957 1.06251 0.93005 0.92152 1.24927 0.95108 0.96526 0.97467 1.69917 1.37481 1.15285 1.30945 0.86510 0.77491 0.78827 0.84714 1.20627 1.21095 1.19699 1.01947 0.73353 0.72970 0.72843 1.93641 1.40728 1.84865 1.75664 1.93524 1.67584 1.60181 1.76783 1.56344 1.14245 1.85962 1.32127 1.20662 0.88290 0.93992 0.92283 0.88508 1.21864 0.98379 0.98787 0.97371 1.21571 0.98483 0.96867 0.98573 1.21958 0.99328 0.92740 0.93450 1.60193 1.34044 1.14343 1.23307 1.22613 0.92303 0.98235 0.96632 0.93841 0.90444 0.91572 0.94780 0.94537 0.92734 0.75649 0.90949 0.91694 0.90722 0.91280 0.95250 0.90748 0.83539 0.94465 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.44 59.84 0.62 2.19 16 2 N -1.00 -20.36 2.93 -123.05 -0.36 -20.72 16 3 C 0.26 6.40 5.08 -5.19 -0.03 6.37 16 4 C -0.53 -14.82 9.38 -34.44 -0.32 -15.15 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 S 2.78 55.19 6.08 -107.50 -0.65 54.54 16 13 O -0.97 -23.18 17.11 -57.17 -0.98 -24.16 16 14 O -1.00 -20.97 16.08 -57.17 -0.92 -21.89 16 15 N -1.13 -16.78 5.53 -4.82 -0.03 -16.81 16 16 C 0.16 2.02 2.98 -67.84 -0.20 1.82 16 17 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 18 C -0.12 -1.30 5.53 -26.60 -0.15 -1.44 16 19 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 20 C 0.05 0.48 6.55 -3.84 -0.03 0.45 16 21 N -0.69 -7.10 6.85 -113.81 -0.78 -7.88 16 22 C 0.03 0.41 6.16 -3.83 -0.02 0.38 16 23 H 0.04 0.63 6.21 -51.93 -0.32 0.30 16 24 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 25 H 0.07 1.10 7.02 -51.93 -0.36 0.73 16 26 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 27 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.41 5.36 8.84 -34.47 -0.30 5.05 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.35 3.07 8.90 -39.29 -0.35 2.72 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.25 5.56 -51.93 -0.29 0.96 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -33.45 317.32 -9.36 -42.81 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.76 Total: 2.74 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -0.43 Total: -70.81 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.90 Total: -46.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 55.19 SS G_CDS: -0.65 Total: 54.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.45 -9.36 -42.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.635 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds