Wall clock time and date at job start Mon Mar 30 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.62877 * 2 1 4 4 C 1.53243 * 109.62565 * 239.61162 * 2 1 3 5 5 N 1.46894 * 109.33972 * 186.45989 * 4 2 1 6 6 C 1.46905 * 111.26788 * 63.10584 * 5 4 2 7 7 C 1.53235 * 109.34027 * 296.89767 * 6 5 4 8 8 N 1.47074 * 108.52423 * 53.82464 * 7 6 5 9 9 S 1.65604 * 120.87792 * 128.83463 * 8 7 6 10 10 O 1.42103 * 106.40140 * 206.00090 * 9 8 7 11 11 O 1.42090 * 106.40448 * 338.92949 * 9 8 7 12 12 N 1.65600 * 107.21553 * 92.46973 * 9 8 7 13 13 C 1.46505 * 120.00261 * 98.37963 * 12 9 8 14 14 C 1.46501 * 119.99671 * 278.38114 * 12 9 8 15 15 C 1.50698 * 109.47188 * 98.23842 * 14 12 9 16 16 H 1.08002 * 120.00013 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00029 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00073 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46956 * 89.99811 * 19 17 15 21 21 H 1.48491 * 109.47702 * 210.00086 * 19 17 15 22 22 H 1.48505 * 109.47117 * 330.00551 * 19 17 15 23 23 H 1.08999 * 109.47618 * 174.20193 * 1 2 3 24 24 H 1.09003 * 109.47487 * 54.20018 * 1 2 3 25 25 H 1.08997 * 109.46940 * 294.20327 * 1 2 3 26 26 H 1.09006 * 109.49386 * 306.42407 * 4 2 1 27 27 H 1.09003 * 109.49135 * 66.50249 * 4 2 1 28 28 H 1.00904 * 110.99868 * 187.25259 * 5 4 2 29 29 H 1.09001 * 109.48903 * 56.85677 * 6 5 4 30 30 H 1.08999 * 109.49396 * 176.90791 * 6 5 4 31 31 H 1.09000 * 109.62761 * 173.54003 * 7 6 5 32 32 H 1.09007 * 109.62681 * 293.92156 * 7 6 5 33 33 H 1.08997 * 109.46714 * 85.58406 * 13 12 9 34 34 H 1.08996 * 109.46806 * 205.58185 * 13 12 9 35 35 H 1.08994 * 109.46784 * 325.58594 * 13 12 9 36 36 H 1.09006 * 109.46828 * 218.23330 * 14 12 9 37 37 H 1.08996 * 109.47613 * 338.23639 * 14 12 9 38 38 H 0.97001 * 120.00373 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7302 -1.2451 5 7 3.5054 -0.8625 -1.1624 6 6 3.9015 -1.6872 -0.0131 7 6 3.4629 -0.9963 1.2825 8 7 2.0241 -0.7049 1.1926 9 16 0.9879 -1.1580 2.4023 10 8 -0.2904 -1.3086 1.8003 11 8 1.6376 -2.1995 3.1180 12 7 0.8648 0.1211 3.4469 13 6 -0.2747 1.0370 3.3525 14 6 1.8956 0.3367 4.4654 15 6 2.8699 1.3794 3.9812 16 1 2.7352 1.8355 3.0116 17 6 3.9341 1.7503 4.7757 18 7 4.7841 2.6606 4.3533 19 14 4.1676 0.9609 6.4525 20 1 5.0136 -0.2519 6.3151 21 1 4.8305 1.9259 7.3659 22 1 2.8444 0.5809 7.0093 23 1 -0.3634 -1.0224 -0.1038 24 1 -0.3634 0.6011 -0.8335 25 1 -0.3633 0.4213 0.9373 26 1 1.5922 -1.7204 -1.2992 27 1 1.7810 -0.1602 -2.1360 28 1 3.8840 -1.2332 -2.0211 29 1 3.4232 -2.6640 -0.0844 30 1 4.9844 -1.8117 -0.0108 31 1 3.6508 -1.6550 2.1304 32 1 4.0202 -0.0681 1.4093 33 1 -1.1114 0.6359 3.9244 34 1 0.0071 2.0100 3.7548 35 1 -0.5674 1.1463 2.3083 36 1 1.4278 0.6777 5.3891 37 1 2.4254 -0.5978 4.6499 38 1 5.5325 2.9218 4.9123 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237459281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:21 Heat of formation + Delta-G solvation = -42.866925 kcal Electronic energy + Delta-G solvation = -21887.694266 eV Core-core repulsion = 18700.120683 eV Total energy + Delta-G solvation = -3187.573583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.57331 -37.02136 -35.64631 -35.31673 -33.53267 -32.45191 -31.97452 -28.42850 -27.23926 -25.15654 -24.98225 -22.32953 -21.86844 -20.46687 -18.28117 -17.20405 -16.95821 -16.68974 -15.96370 -15.61021 -14.97625 -14.65384 -14.33375 -14.12326 -13.77903 -13.45666 -13.21300 -12.84584 -12.55204 -12.47709 -12.33556 -11.96760 -11.77595 -11.46303 -11.33456 -11.23886 -11.08339 -10.99004 -10.77847 -10.55565 -10.30942 -10.20888 -9.86377 -9.58714 -8.85449 -8.65354 -8.23049 -8.05869 -6.15356 -4.15849 1.21333 3.25118 3.31736 3.35924 3.40637 4.06393 4.26373 4.34621 4.84011 4.86681 5.13052 5.16856 5.29582 5.41213 5.47785 5.53420 5.62213 5.74598 5.80571 5.89654 5.91601 6.02315 6.11409 6.37416 6.45738 6.49419 6.58264 6.75664 6.80711 6.95354 7.05905 7.12522 7.40365 7.42607 7.55184 8.42005 8.90011 9.45054 10.96807 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.008326 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.433474 B = 3362.138738 C = 3960.057326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.157 3.843 3 H 0.081 0.919 4 C 0.054 3.946 5 N -0.686 5.686 6 C 0.048 3.952 7 C 0.127 3.873 8 N -0.996 5.996 9 S 2.785 3.215 10 O -0.991 6.991 11 O -0.988 6.988 12 N -0.992 5.992 13 C 0.101 3.899 14 C 0.215 3.785 15 C -0.538 4.538 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.892 5.892 19 Si 0.866 3.134 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.264 1.264 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.339 0.661 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -5.709 -9.068 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.051 3.949 3 H 0.099 0.901 4 C -0.077 4.077 5 N -0.317 5.317 6 C -0.083 4.083 7 C 0.001 3.999 8 N -0.835 5.835 9 S 2.796 3.204 10 O -0.976 6.976 11 O -0.972 6.972 12 N -0.833 5.833 13 C -0.045 4.045 14 C 0.091 3.909 15 C -0.577 4.577 16 H 0.100 0.900 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.693 3.307 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.189 1.189 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.157 0.843 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.739 -5.853 -8.539 11.837 hybrid contribution 0.362 -0.666 0.571 0.949 sum -5.377 -6.520 -7.969 11.615 Atomic orbital electron populations 1.22817 0.92916 1.04746 1.03077 1.21004 0.93759 0.96470 0.83711 0.90075 1.22311 0.87995 0.99146 0.98269 1.60163 1.10608 1.54776 1.06132 1.22304 1.00501 0.93885 0.91600 1.21468 0.80024 1.01717 0.96645 1.58065 1.19105 1.73352 1.32965 1.01825 0.72835 0.73628 0.72143 1.93661 1.41211 1.86711 1.75994 1.93523 1.77049 1.54328 1.72347 1.57458 1.32201 1.45917 1.47699 1.21401 0.87170 0.95038 1.00929 1.19575 0.86241 0.97721 0.87352 1.21432 1.08577 1.22081 1.05598 0.90015 1.24852 0.95471 0.94605 0.97774 1.69894 1.14685 1.30737 1.37623 0.86997 0.79211 0.79708 0.84781 1.19760 1.21015 1.18875 0.89485 0.92218 0.90434 0.94961 0.90086 0.84294 0.95216 0.89775 0.88949 0.89403 0.93818 0.90364 0.92058 0.94780 0.94380 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 7.52 37.16 0.28 -2.26 16 2 C 0.16 2.41 3.67 -67.49 -0.25 2.16 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.05 0.69 5.99 -3.70 -0.02 0.67 16 5 N -0.69 -8.94 6.82 -113.50 -0.77 -9.71 16 6 C 0.05 0.67 6.70 -3.70 -0.02 0.65 16 7 C 0.13 2.24 6.67 -3.61 -0.02 2.22 16 8 N -1.00 -17.70 3.39 -106.20 -0.36 -18.06 16 9 S 2.78 54.78 5.75 -107.50 -0.62 54.16 16 10 O -0.99 -18.93 11.98 -57.17 -0.69 -19.62 16 11 O -0.99 -22.09 15.43 -57.17 -0.88 -22.98 16 12 N -0.99 -20.19 3.23 -123.05 -0.40 -20.59 16 13 C 0.10 1.72 10.26 59.85 0.61 2.33 16 14 C 0.21 5.02 4.48 -5.19 -0.02 4.99 16 15 C -0.54 -14.12 9.91 -34.44 -0.34 -14.46 16 16 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 19 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 23 H 0.09 1.33 6.59 -51.93 -0.34 0.98 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.20 3.35 -51.93 -0.17 1.02 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.34 3.48 8.90 -39.29 -0.35 3.14 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.70 6.88 -51.93 -0.36 1.34 16 32 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 35 H 0.06 0.94 5.03 -51.93 -0.26 0.67 16 36 H 0.03 0.79 7.19 -51.93 -0.37 0.41 16 37 H 0.04 0.92 6.44 -51.93 -0.33 0.59 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -30.95 303.37 -8.51 -39.46 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.58 Total: 3.57 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 0.11 Total: -1.71 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.76 Total: -73.39 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.57 Total: -42.60 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 54.78 SS G_CDS: -0.62 Total: 54.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.95 -8.51 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237459281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.412 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds