Wall clock time and date at job start Mon Mar 30 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.62877 * 2 1 4 4 C 1.53243 * 109.62565 * 239.61162 * 2 1 3 5 5 N 1.46894 * 109.33972 * 186.45989 * 4 2 1 6 6 C 1.46905 * 111.26788 * 63.10584 * 5 4 2 7 7 C 1.53235 * 109.34027 * 296.89767 * 6 5 4 8 8 N 1.47074 * 108.52423 * 53.82464 * 7 6 5 9 9 S 1.65604 * 120.87792 * 128.83463 * 8 7 6 10 10 O 1.42103 * 106.40140 * 206.00090 * 9 8 7 11 11 O 1.42090 * 106.40448 * 338.92949 * 9 8 7 12 12 N 1.65600 * 107.21553 * 92.46973 * 9 8 7 13 13 C 1.46505 * 120.00261 * 98.37963 * 12 9 8 14 14 C 1.46501 * 119.99671 * 278.38114 * 12 9 8 15 15 C 1.50698 * 109.47188 * 98.23842 * 14 12 9 16 16 H 1.08002 * 120.00013 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00029 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00073 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46956 * 89.99811 * 19 17 15 21 21 H 1.48491 * 109.47702 * 210.00086 * 19 17 15 22 22 H 1.48505 * 109.47117 * 330.00551 * 19 17 15 23 23 H 1.08999 * 109.47618 * 174.20193 * 1 2 3 24 24 H 1.09003 * 109.47487 * 54.20018 * 1 2 3 25 25 H 1.08997 * 109.46940 * 294.20327 * 1 2 3 26 26 H 1.09006 * 109.49386 * 306.42407 * 4 2 1 27 27 H 1.09003 * 109.49135 * 66.50249 * 4 2 1 28 28 H 1.00904 * 110.99868 * 187.25259 * 5 4 2 29 29 H 1.09001 * 109.48903 * 56.85677 * 6 5 4 30 30 H 1.08999 * 109.49396 * 176.90791 * 6 5 4 31 31 H 1.09000 * 109.62761 * 173.54003 * 7 6 5 32 32 H 1.09007 * 109.62681 * 293.92156 * 7 6 5 33 33 H 1.08997 * 109.46714 * 85.58406 * 13 12 9 34 34 H 1.08996 * 109.46806 * 205.58185 * 13 12 9 35 35 H 1.08994 * 109.46784 * 325.58594 * 13 12 9 36 36 H 1.09006 * 109.46828 * 218.23330 * 14 12 9 37 37 H 1.08996 * 109.47613 * 338.23639 * 14 12 9 38 38 H 0.97001 * 120.00373 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7302 -1.2451 5 7 3.5054 -0.8625 -1.1624 6 6 3.9015 -1.6872 -0.0131 7 6 3.4629 -0.9963 1.2825 8 7 2.0241 -0.7049 1.1926 9 16 0.9879 -1.1580 2.4023 10 8 -0.2904 -1.3086 1.8003 11 8 1.6376 -2.1995 3.1180 12 7 0.8648 0.1211 3.4469 13 6 -0.2747 1.0370 3.3525 14 6 1.8956 0.3367 4.4654 15 6 2.8699 1.3794 3.9812 16 1 2.7352 1.8355 3.0116 17 6 3.9341 1.7503 4.7757 18 7 4.7841 2.6606 4.3533 19 14 4.1676 0.9609 6.4525 20 1 5.0136 -0.2519 6.3151 21 1 4.8305 1.9259 7.3659 22 1 2.8444 0.5809 7.0093 23 1 -0.3634 -1.0224 -0.1038 24 1 -0.3634 0.6011 -0.8335 25 1 -0.3633 0.4213 0.9373 26 1 1.5922 -1.7204 -1.2992 27 1 1.7810 -0.1602 -2.1360 28 1 3.8840 -1.2332 -2.0211 29 1 3.4232 -2.6640 -0.0844 30 1 4.9844 -1.8117 -0.0108 31 1 3.6508 -1.6550 2.1304 32 1 4.0202 -0.0681 1.4093 33 1 -1.1114 0.6359 3.9244 34 1 0.0071 2.0100 3.7548 35 1 -0.5674 1.1463 2.3083 36 1 1.4278 0.6777 5.3891 37 1 2.4254 -0.5978 4.6499 38 1 5.5325 2.9218 4.9123 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237459281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:21 Heat of formation + Delta-G solvation = -67.848976 kcal Electronic energy + Delta-G solvation = -21888.777569 eV Core-core repulsion = 18700.120683 eV Total energy + Delta-G solvation = -3188.656886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79364 -38.57867 -37.32961 -36.93713 -34.73074 -34.48563 -33.24151 -30.27148 -28.46870 -26.77819 -26.17601 -23.76325 -23.56109 -21.72366 -19.81121 -19.08497 -18.56924 -18.18864 -17.46954 -16.83515 -16.53933 -16.07507 -15.74349 -15.59092 -15.27314 -14.76147 -14.65600 -14.41981 -14.23060 -14.07637 -13.79312 -13.34375 -13.24842 -13.19815 -13.03260 -12.81952 -12.37669 -12.33243 -12.19692 -12.11699 -12.03632 -11.69551 -11.65614 -11.16462 -10.76259 -10.15890 -9.74935 -9.31914 -8.26874 -6.30995 -0.32413 1.36569 1.39633 1.47286 1.89009 2.34814 2.52814 3.06922 3.24311 3.34416 3.61901 3.94519 4.04891 4.13863 4.24059 4.31431 4.42240 4.51403 4.67192 4.70650 4.74975 4.76998 4.85242 4.89736 4.96328 5.09655 5.17273 5.22856 5.35337 5.44475 5.56321 5.59794 5.87007 5.98209 6.32875 6.55286 6.74321 7.32825 8.88141 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.008326 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.433474 B = 3362.138738 C = 3960.057326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.149 3.851 3 H 0.068 0.932 4 C 0.057 3.943 5 N -0.694 5.694 6 C 0.055 3.945 7 C 0.125 3.875 8 N -0.996 5.996 9 S 2.791 3.209 10 O -0.985 6.985 11 O -1.017 7.017 12 N -1.001 6.001 13 C 0.092 3.908 14 C 0.222 3.778 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.025 3.975 18 N -0.934 5.934 19 Si 0.921 3.079 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.247 1.247 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.110 0.890 28 H 0.359 0.641 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -6.491 -9.830 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.043 3.957 3 H 0.086 0.914 4 C -0.074 4.074 5 N -0.327 5.327 6 C -0.076 4.076 7 C -0.001 4.001 8 N -0.837 5.837 9 S 2.802 3.198 10 O -0.969 6.969 11 O -1.002 7.002 12 N -0.841 5.841 13 C -0.053 4.053 14 C 0.097 3.903 15 C -0.568 4.568 16 H 0.069 0.931 17 C -0.175 4.175 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.171 1.171 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.180 0.820 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.678 -6.641 -9.320 13.250 hybrid contribution 0.604 -0.364 0.693 0.989 sum -6.074 -7.005 -8.627 12.664 Atomic orbital electron populations 1.22765 0.91932 1.04809 1.03739 1.21248 0.94614 0.95963 0.83888 0.91422 1.22325 0.87775 0.99504 0.97777 1.60094 1.10982 1.54892 1.06727 1.22203 1.01614 0.93662 0.90105 1.21425 0.79806 1.00329 0.98552 1.58007 1.18871 1.73528 1.33281 1.01608 0.72933 0.73214 0.72071 1.93679 1.41008 1.86680 1.75581 1.93478 1.77683 1.55701 1.73307 1.57487 1.32373 1.46624 1.47574 1.21635 0.86700 0.94361 1.02573 1.19327 0.86422 0.96213 0.88370 1.21523 1.09057 1.21987 1.04191 0.93131 1.25598 0.95309 0.95141 1.01443 1.70017 1.15593 1.32560 1.39243 0.86110 0.79942 0.78864 0.80606 1.19459 1.20532 1.17077 0.90143 0.88965 0.91782 0.94424 0.87209 0.82048 0.94422 0.88013 0.90409 0.92394 0.91666 0.90887 0.90333 0.93946 0.95101 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 7.52 71.98 0.54 -4.09 16 2 C 0.15 4.38 3.67 44.96 0.17 4.55 16 3 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.06 1.32 5.99 86.39 0.52 1.84 16 5 N -0.69 -16.62 6.82 -513.01 -3.50 -20.12 16 6 C 0.06 1.48 6.70 86.38 0.58 2.06 16 7 C 0.12 4.47 6.67 86.35 0.58 5.05 16 8 N -1.00 -35.25 3.39 -489.92 -1.66 -36.91 16 9 S 2.79 108.68 5.75 -56.49 -0.32 108.35 16 10 O -0.99 -36.33 11.98 -128.00 -1.53 -37.87 16 11 O -1.02 -45.54 15.43 -128.00 -1.97 -47.52 16 12 N -1.00 -40.35 3.23 -543.23 -1.76 -42.11 16 13 C 0.09 3.04 10.26 127.77 1.31 4.35 16 14 C 0.22 10.31 4.48 85.63 0.38 10.70 16 15 C -0.53 -28.23 9.91 25.60 0.25 -27.98 16 16 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 17 C 0.02 1.35 5.47 84.66 0.46 1.81 16 18 N -0.93 -55.26 13.96 21.45 0.30 -54.96 16 19 Si 0.92 42.24 27.47 68.60 1.88 44.12 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 23 H 0.08 2.27 6.59 -2.39 -0.02 2.25 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.87 3.35 -2.39 -0.01 1.87 16 26 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.36 6.33 8.90 -89.69 -0.80 5.53 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.08 2.96 6.88 -2.39 -0.02 2.94 16 32 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 35 H 0.08 2.30 5.03 -2.39 -0.01 2.29 16 36 H 0.04 1.91 7.19 -2.38 -0.02 1.89 16 37 H 0.03 1.49 6.44 -2.39 -0.02 1.48 16 38 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -66.53 303.37 -3.56 -70.09 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.21 Total: 18.63 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 4.79 Total: -1.71 kcal Atomic # 7 Polarization: -147.49 SS G_CDS: -6.61 Total: -154.10 kcal Atomic # 8 Polarization: -81.88 SS G_CDS: -3.51 Total: -85.38 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.12 kcal Atomic # 16 Polarization: 108.68 SS G_CDS: -0.32 Total: 108.35 kcal Total: -66.53 -3.56 -70.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237459281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.240 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds