Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46783 * 2 1 4 4 C 1.50696 * 109.47492 * 240.00129 * 2 1 3 5 5 H 1.08002 * 119.99929 * 240.00247 * 4 2 1 6 6 C 1.37879 * 120.00362 * 59.99367 * 4 2 1 7 7 N 1.31518 * 119.99706 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46898 * 90.00206 * 8 6 4 10 10 H 1.48504 * 109.46641 * 210.00291 * 8 6 4 11 11 H 1.48498 * 109.46887 * 330.00027 * 8 6 4 12 12 N 1.46499 * 109.47194 * 119.99654 * 2 1 3 13 13 C 1.46499 * 120.00136 * 59.99930 * 12 2 1 14 14 C 1.34784 * 119.99971 * 240.00124 * 12 2 1 15 15 O 1.21695 * 119.99611 * 359.72672 * 14 12 2 16 16 C 1.46427 * 119.99828 * 180.02562 * 14 12 2 17 17 C 1.34804 * 119.99836 * 180.02562 * 16 14 12 18 18 C 1.47216 * 119.99665 * 180.02562 * 17 16 14 19 19 C 1.39860 * 120.15180 * 179.97438 * 18 17 16 20 20 C 1.37881 * 119.87500 * 179.97438 * 19 18 17 21 21 C 1.38381 * 120.19964 * 359.97438 * 20 19 18 22 22 C 1.38604 * 120.31963 * 359.97438 * 21 20 19 23 23 F 1.35095 * 119.94004 * 180.02562 * 22 21 20 24 24 C 1.38138 * 120.11662 * 359.73970 * 22 21 20 25 25 H 1.09005 * 109.46870 * 60.00341 * 1 2 3 26 26 H 1.09004 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47156 * 300.00402 * 1 2 3 28 28 H 0.96994 * 120.00045 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47008 * 270.00543 * 13 12 2 30 30 H 1.08997 * 109.46865 * 30.00228 * 13 12 2 31 31 H 1.08998 * 109.47058 * 149.99741 * 13 12 2 32 32 H 1.07999 * 120.00122 * 359.97438 * 16 14 12 33 33 H 1.07999 * 120.00042 * 359.97438 * 17 16 14 34 34 H 1.07993 * 120.06636 * 359.97438 * 19 18 17 35 35 H 1.07998 * 119.90337 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.84356 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.10197 * 180.27619 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1619 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7120 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0354 2.0834 15 8 3.0912 1.1282 1.8881 16 6 3.2818 -0.7258 3.2787 17 6 4.0563 -0.0705 4.1663 18 6 4.5480 -0.7648 5.3677 19 6 5.3522 -0.0881 6.2904 20 6 5.8091 -0.7438 7.4140 21 6 5.4738 -2.0686 7.6314 22 6 4.6764 -2.7468 6.7229 23 9 4.3534 -4.0399 6.9430 24 6 4.2066 -2.1009 5.5958 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7094 1.1617 -3.4844 29 1 0.7376 -2.1442 1.9994 30 1 1.5295 -2.5968 0.4710 31 1 2.4629 -2.5817 1.9865 32 1 3.0209 -1.7598 3.4496 33 1 4.3169 0.9636 3.9955 34 1 5.6149 0.9459 6.1232 35 1 6.4298 -0.2216 8.1270 36 1 5.8345 -2.5765 8.5137 37 1 3.5816 -2.6283 4.8903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264094168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -54.999239 kcal Electronic energy + Delta-G solvation = -20389.660252 eV Core-core repulsion = 17046.196660 eV Total energy + Delta-G solvation = -3343.463593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90161 -40.84353 -39.91479 -37.21835 -35.17283 -34.69596 -31.74098 -31.56997 -30.30808 -27.62423 -27.32203 -25.68110 -23.82097 -23.04543 -21.37331 -19.57881 -18.92772 -18.46010 -17.60497 -17.41424 -17.16841 -16.83726 -16.60105 -16.10796 -16.03108 -15.06923 -14.86311 -14.74600 -14.41844 -14.04490 -13.97664 -13.58670 -13.53893 -13.34589 -13.01251 -12.82210 -12.72469 -12.67341 -12.44886 -12.22447 -12.14092 -12.07346 -11.33666 -11.20327 -10.76902 -10.50970 -9.86482 -9.48810 -9.20082 -8.15577 -6.32526 -0.54938 0.20763 0.93486 1.41083 1.42706 1.52828 2.27508 2.37502 2.49419 2.77102 3.12239 3.18041 3.53667 3.70732 3.92904 4.12708 4.16552 4.21664 4.37432 4.45502 4.70903 4.73637 4.74658 4.88314 4.93514 5.01509 5.04959 5.10211 5.12733 5.23197 5.37643 5.46639 5.55076 5.62571 5.65974 5.88273 6.03037 6.14968 6.75160 6.80518 7.29218 7.45259 8.88984 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029205 B = 0.003413 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.524156 B = 8201.218467 C = 8491.883940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.595 5.595 13 C 0.077 3.923 14 C 0.521 3.479 15 O -0.609 6.609 16 C -0.199 4.199 17 C -0.026 4.026 18 C -0.052 4.052 19 C -0.108 4.108 20 C -0.086 4.086 21 C -0.143 4.143 22 C 0.079 3.921 23 F -0.147 7.147 24 C -0.148 4.148 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -8.016 20.503 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.027 0.973 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.324 5.324 13 C -0.065 4.065 14 C 0.312 3.688 15 O -0.494 6.494 16 C -0.219 4.219 17 C -0.046 4.046 18 C -0.052 4.052 19 C -0.126 4.126 20 C -0.104 4.104 21 C -0.161 4.161 22 C 0.060 3.940 23 F -0.126 7.126 24 C -0.167 4.167 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.188 0.812 36 H 0.176 0.824 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.616 -7.402 20.231 22.849 hybrid contribution -0.140 -0.324 -1.283 1.331 sum 7.476 -7.726 18.948 21.786 Atomic orbital electron populations 1.21871 0.97048 1.00155 0.99950 1.18564 0.91705 0.92295 0.81658 0.97263 1.21579 1.32015 1.13139 0.91142 0.92061 1.25761 0.95043 0.95634 1.02076 1.70025 1.37306 1.23841 1.24491 0.85423 0.78846 0.78247 0.78301 1.19171 1.21067 1.19555 1.48161 1.48530 1.13415 1.22265 1.21909 1.01245 0.80527 1.02798 1.19045 0.78866 0.86254 0.84599 1.90715 1.60698 1.19436 1.78570 1.23121 1.02569 1.01883 0.94329 1.22370 0.91938 0.99456 0.90847 1.18815 0.98789 0.92908 0.94685 1.21782 0.95948 1.01382 0.93465 1.21340 0.98554 0.93251 0.97246 1.21635 0.98463 0.96070 0.99977 1.17777 1.00367 0.79081 0.96816 1.91493 1.91446 1.34886 1.94766 1.21518 1.02200 0.95107 0.97870 0.91287 0.93411 0.96198 0.92580 0.91493 0.91041 0.89220 0.82578 0.85252 0.83065 0.81248 0.82353 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 8.97 71.98 0.65 -5.87 16 2 C 0.26 13.93 2.64 44.24 0.12 14.04 16 3 H 0.01 0.60 6.90 -2.38 -0.02 0.58 16 4 C -0.54 -29.94 7.99 25.60 0.20 -29.73 16 5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.59 -26.15 2.75 -831.83 -2.29 -28.44 16 13 C 0.08 2.50 9.14 127.77 1.17 3.67 16 14 C 0.52 22.53 7.61 86.37 0.66 23.19 16 15 O -0.61 -31.98 15.56 -4.33 -0.07 -32.05 16 16 C -0.20 -6.06 8.61 23.62 0.20 -5.86 16 17 C -0.03 -0.70 9.46 23.84 0.23 -0.47 16 18 C -0.05 -1.08 5.87 -20.15 -0.12 -1.19 16 19 C -0.11 -1.68 9.79 22.58 0.22 -1.46 16 20 C -0.09 -1.00 10.03 22.22 0.22 -0.78 16 21 C -0.14 -1.94 10.02 22.39 0.22 -1.72 16 22 C 0.08 1.46 7.29 22.33 0.16 1.63 16 23 F -0.15 -3.02 17.26 44.97 0.78 -2.24 16 24 C -0.15 -2.97 9.39 22.62 0.21 -2.76 16 25 H 0.07 3.77 6.07 -2.38 -0.01 3.75 16 26 H 0.05 2.13 7.67 -2.38 -0.02 2.12 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.47 7.02 -2.39 -0.02 2.45 16 31 H 0.09 2.24 6.09 -2.39 -0.01 2.23 16 32 H 0.16 3.68 4.22 -2.91 -0.01 3.67 16 33 H 0.13 3.71 7.52 -2.91 -0.02 3.69 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.14 2.64 6.17 -2.91 -0.02 2.62 16 Total: -1.00 -72.01 317.61 6.37 -65.64 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.09 Total: 11.03 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.60 Total: -6.07 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.05 Total: -81.79 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.07 Total: -32.05 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.01 6.37 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264094168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.637 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds