Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47453 * 2 1 4 4 C 1.50700 * 109.46996 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00312 * 240.00330 * 4 2 1 6 6 C 1.37884 * 119.99965 * 60.00134 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47218 * 59.99910 * 8 6 4 10 10 H 1.48498 * 109.47225 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46957 * 299.99989 * 8 6 4 12 12 N 1.46499 * 109.47078 * 120.00101 * 2 1 3 13 13 C 1.46506 * 119.99936 * 59.99567 * 12 2 1 14 14 C 1.34773 * 120.00036 * 240.27603 * 12 2 1 15 15 O 1.21713 * 119.99816 * 359.72123 * 14 12 2 16 16 C 1.46339 * 120.00319 * 179.72458 * 14 12 2 17 17 C 1.34889 * 120.00167 * 179.97438 * 16 14 12 18 18 C 1.47111 * 119.99935 * 179.97438 * 17 16 14 19 19 C 1.39895 * 120.14556 * 359.72614 * 18 17 16 20 20 C 1.37790 * 119.85777 * 179.74884 * 19 18 17 21 21 C 1.38684 * 120.14007 * 0.54850 * 20 19 18 22 22 F 1.35097 * 119.85494 * 179.72464 * 21 20 19 23 23 C 1.38690 * 120.28976 * 359.70415 * 21 20 19 24 24 C 1.37787 * 120.14778 * 0.02562 * 23 21 20 25 25 H 1.09005 * 109.46932 * 300.00026 * 1 2 3 26 26 H 1.08996 * 109.47248 * 59.99675 * 1 2 3 27 27 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99381 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 30 30 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 31 31 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 32 32 H 1.08001 * 120.00085 * 359.97438 * 16 14 12 33 33 H 1.07992 * 120.00285 * 0.02562 * 17 16 14 34 34 H 1.08010 * 120.07108 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.93373 * 180.25135 * 20 19 18 36 36 H 1.08004 * 119.92255 * 180.02562 * 23 21 20 37 37 H 1.07998 * 120.07155 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8258 -0.4207 -5.2205 11 1 3.8063 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4280 14 6 2.7886 -0.0341 2.0861 15 8 3.0826 1.1312 1.8935 16 6 3.2714 -0.7221 3.2840 17 6 4.0427 -0.0651 4.1745 18 6 4.5276 -0.7567 5.3789 19 6 4.1859 -2.0940 5.6067 20 6 4.6476 -2.7375 6.7343 21 6 5.4400 -2.0590 7.6480 22 9 5.8850 -2.6940 8.7543 23 6 5.7781 -0.7316 7.4308 24 6 5.3276 -0.0781 6.3045 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7087 1.1612 -3.4844 29 1 2.4156 -2.7378 0.9717 30 1 1.6238 -2.2852 2.5002 31 1 0.6903 -2.3002 0.9846 32 1 3.0102 -1.7560 3.4552 33 1 4.3036 0.9688 4.0036 34 1 3.5652 -2.6223 4.8980 35 1 4.3879 -3.7711 6.9093 36 1 6.3960 -0.2090 8.1461 37 1 5.5919 0.9554 6.1364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264094196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -54.700607 kcal Electronic energy + Delta-G solvation = -20269.336914 eV Core-core repulsion = 16925.886271 eV Total energy + Delta-G solvation = -3343.450643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.92383 -40.81488 -39.91903 -37.19175 -35.04333 -34.61484 -32.20944 -31.61994 -29.92448 -27.62236 -27.28311 -25.40489 -24.08431 -23.03479 -21.28991 -19.54254 -18.88968 -18.52013 -18.13522 -17.42283 -16.85568 -16.60396 -16.38364 -16.08884 -16.00859 -15.24673 -14.83417 -14.53891 -14.46934 -14.08364 -14.02390 -13.61254 -13.48015 -13.43546 -12.98804 -12.90834 -12.74588 -12.68755 -12.52782 -12.17391 -12.12347 -11.85938 -11.20577 -11.16888 -10.73358 -10.49430 -10.12649 -9.41018 -9.07876 -8.14183 -6.31306 -0.54964 0.27817 0.90442 1.41997 1.44398 1.51924 2.29650 2.39827 2.52080 2.78922 3.13394 3.23953 3.56073 3.68686 3.92547 4.07346 4.12945 4.28986 4.34688 4.49436 4.70641 4.80242 4.88671 4.91363 4.94869 5.03703 5.05482 5.09136 5.12204 5.16018 5.34720 5.47781 5.59435 5.67385 5.68560 5.86127 6.04882 6.16372 6.76578 6.84776 7.31826 7.48314 8.89939 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035452 B = 0.003130 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.620058 B = 8944.727265 C = 9103.498450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.008 0.992 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.080 3.920 14 C 0.519 3.481 15 O -0.613 6.613 16 C -0.201 4.201 17 C -0.024 4.024 18 C -0.089 4.089 19 C -0.075 4.075 20 C -0.154 4.154 21 C 0.090 3.910 22 F -0.145 7.145 23 C -0.156 4.156 24 C -0.071 4.071 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.122 0.878 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -9.329 19.288 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.026 0.974 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.311 3.689 15 O -0.498 6.498 16 C -0.221 4.221 17 C -0.044 4.044 18 C -0.089 4.089 19 C -0.092 4.092 20 C -0.172 4.172 21 C 0.071 3.929 22 F -0.124 7.124 23 C -0.175 4.175 24 C -0.089 4.089 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.140 0.860 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.077 -8.689 19.055 21.807 hybrid contribution 0.245 0.007 -0.981 1.012 sum 6.322 -8.682 18.074 21.024 Atomic orbital electron populations 1.21887 0.97049 1.00247 0.99984 1.18543 0.91710 0.92209 0.81764 0.97443 1.21563 1.32018 1.13128 0.91177 0.92096 1.25760 0.95049 0.95650 1.02076 1.70021 1.37268 1.23916 1.24514 0.85495 0.78391 0.79025 0.78025 1.18576 1.20905 1.20282 1.48155 1.48720 1.13454 1.22122 1.21899 1.01616 0.80199 1.02503 1.19099 0.78800 0.86240 0.84725 1.90723 1.60736 1.19534 1.78828 1.23092 1.02872 1.02101 0.94006 1.22314 0.91924 0.99230 0.90929 1.19114 1.00266 0.94670 0.94853 1.21541 0.97760 0.93176 0.96759 1.21314 0.99343 1.02186 0.94386 1.18186 0.98232 0.91887 0.84636 1.91492 1.87688 1.82186 1.51032 1.21297 1.03084 0.93187 0.99890 1.21468 0.94528 1.00917 0.91938 0.96106 0.91364 0.93144 0.92613 0.92438 0.88303 0.91048 0.81881 0.85980 0.82589 0.82389 0.82584 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.95 71.98 0.64 -5.84 16 2 C 0.26 13.77 2.64 44.25 0.12 13.89 16 3 H 0.01 0.48 6.90 -2.39 -0.02 0.47 16 4 C -0.54 -29.73 8.37 25.60 0.21 -29.52 16 5 H 0.06 3.24 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.20 16 8 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.60 -25.53 2.75 -831.90 -2.29 -27.82 16 13 C 0.08 2.44 9.40 127.77 1.20 3.64 16 14 C 0.52 21.94 7.61 86.35 0.66 22.59 16 15 O -0.61 -31.94 15.56 -4.39 -0.07 -32.01 16 16 C -0.20 -5.73 8.61 23.61 0.20 -5.53 16 17 C -0.02 -0.61 9.46 23.83 0.23 -0.39 16 18 C -0.09 -1.73 5.87 -20.15 -0.12 -1.85 16 19 C -0.07 -1.20 9.41 22.57 0.21 -0.99 16 20 C -0.15 -2.29 10.01 22.27 0.22 -2.07 16 21 C 0.09 1.51 7.31 22.48 0.16 1.68 16 22 F -0.15 -2.65 17.26 44.97 0.78 -1.88 16 23 C -0.16 -2.38 10.01 22.27 0.22 -2.16 16 24 C -0.07 -1.17 9.79 22.56 0.22 -0.95 16 25 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 27 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 2.09 6.08 -2.39 -0.01 2.08 16 31 H 0.07 2.22 6.43 -2.39 -0.02 2.20 16 32 H 0.16 3.29 4.21 -2.91 -0.01 3.28 16 33 H 0.12 3.49 7.52 -2.91 -0.02 3.47 16 34 H 0.16 1.88 6.17 -2.91 -0.02 1.86 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -71.91 316.90 6.41 -65.49 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.09 Total: 10.47 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.64 Total: -6.26 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.05 Total: -81.02 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.07 Total: -32.01 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -71.91 6.41 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264094196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.793 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds