Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81401 * 109.46725 * 2 1 4 4 C 1.76201 * 102.99731 * 180.02562 * 3 2 1 5 5 C 1.38997 * 120.08108 * 0.29357 * 4 3 2 6 6 C 1.38066 * 119.91983 * 180.25107 * 5 4 3 7 7 C 1.38320 * 120.07733 * 359.45572 * 6 5 4 8 8 C 1.38284 * 120.16280 * 0.27107 * 7 6 5 9 9 C 1.50702 * 119.96070 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47504 * 89.99486 * 9 8 7 11 11 C 1.36941 * 119.99612 * 89.99920 * 10 9 8 12 12 H 1.07993 * 120.00465 * 304.47185 * 11 10 9 13 13 C 1.38821 * 119.99604 * 124.47442 * 11 10 9 14 14 N 1.31615 * 119.99780 * 164.67614 * 13 11 10 15 15 Si 1.86797 * 120.00087 * 344.66924 * 13 11 10 16 16 H 1.48507 * 109.46741 * 91.90575 * 15 13 11 17 17 H 1.48501 * 109.47208 * 211.90349 * 15 13 11 18 18 H 1.48501 * 109.47245 * 331.90850 * 15 13 11 19 19 C 1.46496 * 120.00407 * 270.00477 * 10 9 8 20 20 C 1.53006 * 117.49923 * 183.06839 * 19 10 9 21 21 C 1.52998 * 117.50104 * 114.40791 * 19 10 9 22 22 C 1.38100 * 120.08227 * 359.97438 * 8 7 6 23 23 H 1.09008 * 109.47047 * 300.00304 * 1 2 3 24 24 H 1.09001 * 109.47290 * 59.99988 * 1 2 3 25 25 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46982 * 240.00094 * 2 1 3 27 27 H 1.08998 * 109.47044 * 119.99280 * 2 1 3 28 28 H 1.08003 * 120.04255 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.95938 * 179.72444 * 6 5 4 30 30 H 1.08005 * 119.91917 * 180.29469 * 7 6 5 31 31 H 1.08997 * 109.47201 * 210.00137 * 9 8 7 32 32 H 1.09002 * 109.46963 * 329.99774 * 9 8 7 33 33 H 0.96996 * 120.00365 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.55127 * 328.73305 * 19 10 9 35 35 H 1.08997 * 117.49897 * 359.97438 * 20 19 10 36 36 H 1.09003 * 117.49497 * 145.01957 * 20 19 10 37 37 H 1.09001 * 117.49753 * 214.97984 * 21 19 10 38 38 H 1.08993 * 117.49720 * 359.97438 * 21 19 10 39 39 H 1.07992 * 120.04316 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8853 1.5118 -0.0008 5 6 4.4421 0.2382 -0.0074 6 6 5.8143 0.0864 -0.0027 7 6 6.6349 1.1999 -0.0029 8 6 6.0846 2.4686 -0.0020 9 6 6.9829 3.6786 -0.0028 10 7 7.2727 4.0709 -1.3842 11 6 6.4558 4.9612 -2.0287 12 1 5.3970 4.7637 -2.1070 13 6 6.9889 6.1177 -2.5814 14 7 6.2870 6.8170 -3.4478 15 14 8.7021 6.6815 -2.0953 16 1 9.6965 6.1159 -3.0424 17 1 8.7658 8.1645 -2.1378 18 1 9.0060 6.2120 -0.7197 19 6 8.4361 3.5108 -2.0761 20 6 8.7260 4.0140 -3.4917 21 6 8.1731 2.6026 -3.2789 22 6 4.7129 2.6281 -0.0016 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8020 -0.6317 -0.0124 29 1 6.2476 -0.9029 -0.0033 30 1 7.7081 1.0783 -0.0040 31 1 6.4855 4.5007 0.5117 32 1 7.9147 3.4397 0.5100 33 1 6.6592 7.6252 -3.8338 34 1 9.2900 3.2719 -1.4422 35 1 8.0509 4.7615 -3.9082 36 1 9.7707 4.1056 -3.7891 37 1 8.8542 1.7663 -3.4365 38 1 7.1344 2.4214 -3.5551 39 1 4.2838 3.6191 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274464195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 70.026035 kcal Electronic energy + Delta-G solvation = -19161.028960 eV Core-core repulsion = 16389.200046 eV Total energy + Delta-G solvation = -2771.828914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.85997 -37.10696 -33.50144 -32.97309 -32.07818 -30.60007 -30.03121 -25.90300 -23.93087 -23.47092 -22.05161 -21.53684 -21.03056 -19.71464 -17.08628 -16.57543 -16.18200 -15.23914 -14.98897 -14.92942 -14.73885 -14.54468 -13.71825 -13.61987 -13.25046 -12.83858 -12.57374 -12.35861 -12.10935 -11.93163 -11.85055 -11.58855 -11.23020 -11.02968 -10.74077 -10.62798 -10.39935 -10.31911 -9.96662 -9.79386 -9.48715 -9.38063 -9.12569 -8.53273 -8.26463 -7.15204 -6.47162 -6.01263 -3.71404 1.61273 1.65778 1.78894 2.59209 3.39351 3.48149 3.55341 4.07685 4.52748 4.73617 4.77815 4.89557 5.01873 5.11755 5.18616 5.26184 5.34471 5.51200 5.55506 5.58864 5.75541 5.82553 5.86686 5.88441 5.99916 6.07833 6.15775 6.31482 6.42242 6.53139 6.59510 6.61451 6.65079 6.78919 7.05426 7.16071 7.33091 7.34938 8.09528 8.52817 8.99951 9.63276 10.12061 11.08281 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.004959 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.688454 B = 5645.497723 C = 6216.956926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 S -0.127 6.127 4 C -0.086 4.086 5 C -0.147 4.147 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.059 4.059 9 C 0.180 3.820 10 N -0.565 5.565 11 C -0.284 4.284 12 H 0.071 0.929 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.885 3.115 16 H -0.270 1.270 17 H -0.304 1.304 18 H -0.270 1.270 19 C 0.110 3.890 20 C -0.198 4.198 21 C -0.210 4.210 22 C -0.077 4.077 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -13.582 7.664 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.260 4.260 3 S 0.115 5.885 4 C -0.198 4.198 5 C -0.171 4.171 6 C -0.129 4.129 7 C -0.134 4.134 8 C -0.064 4.064 9 C 0.054 3.946 10 N -0.283 5.283 11 C -0.413 4.413 12 H 0.088 0.912 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.713 3.287 16 H -0.196 1.196 17 H -0.232 1.232 18 H -0.195 1.195 19 C 0.002 3.998 20 C -0.235 4.235 21 C -0.251 4.251 22 C -0.101 4.101 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.535 -12.412 7.570 15.230 hybrid contribution 1.708 -0.892 -0.135 1.931 sum -2.827 -13.304 7.435 15.501 Atomic orbital electron populations 1.21507 0.92096 1.02566 1.03318 1.23535 1.00186 0.97037 1.05226 1.85568 0.99101 1.10651 1.93183 1.21616 0.95868 0.96544 1.05822 1.20927 0.95706 0.94994 1.05477 1.20896 0.92995 0.98390 1.00594 1.21019 0.99450 0.92073 1.00824 1.20928 0.94183 0.96624 0.94626 1.20011 0.95153 0.92225 0.87190 1.43515 1.28320 1.48155 1.08349 1.18544 0.91917 0.97653 1.33157 0.91188 1.25847 0.97694 0.95260 0.95637 1.69866 1.38496 1.17286 1.27828 0.86801 0.85673 0.76219 0.80027 1.19588 1.23243 1.19508 1.21301 0.91634 0.99602 0.87217 1.23512 1.00368 0.98579 1.01090 1.23328 1.01116 0.92603 1.08063 1.20716 0.92701 0.97183 0.99470 0.91638 0.91505 0.91091 0.89683 0.89788 0.86896 0.86617 0.86479 0.91335 0.93347 0.92519 0.89607 0.86243 0.90778 0.91228 0.89381 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.92 37.16 0.37 -0.79 16 2 C -0.11 -1.18 5.05 37.16 0.19 -0.99 16 3 S -0.13 -1.87 21.92 -107.50 -2.36 -4.23 16 4 C -0.09 -1.44 6.11 -39.03 -0.24 -1.68 16 5 C -0.15 -2.18 9.36 -39.36 -0.37 -2.55 16 6 C -0.11 -1.58 10.04 -39.61 -0.40 -1.98 16 7 C -0.11 -1.82 9.70 -39.53 -0.38 -2.20 16 8 C -0.06 -1.08 5.46 -104.65 -0.57 -1.65 16 9 C 0.18 3.55 5.83 -5.20 -0.03 3.52 16 10 N -0.56 -13.04 2.03 -167.03 -0.34 -13.38 16 11 C -0.28 -7.72 9.17 -15.05 -0.14 -7.85 16 12 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 13 C 0.06 1.63 3.74 -17.43 -0.07 1.56 16 14 N -0.90 -26.63 13.97 55.49 0.78 -25.86 16 15 Si 0.88 21.82 24.88 -169.99 -4.23 17.59 16 16 H -0.27 -6.37 5.80 56.52 0.33 -6.05 16 17 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.11 2.34 5.16 -67.93 -0.35 1.99 16 20 C -0.20 -4.36 6.69 -26.69 -0.18 -4.54 16 21 C -0.21 -4.28 10.36 -26.69 -0.28 -4.55 16 22 C -0.08 -1.43 9.45 -39.36 -0.37 -1.81 16 23 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 27 H 0.08 0.81 7.76 -51.92 -0.40 0.41 16 28 H 0.11 1.39 5.88 -52.48 -0.31 1.08 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 32 H 0.05 0.85 8.02 -51.93 -0.42 0.43 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.12 3.07 5.08 -51.93 -0.26 2.80 16 36 H 0.07 1.49 7.86 -51.93 -0.41 1.08 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -29.62 328.57 -10.07 -39.69 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.05 Total: 4.77 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.81 Total: -23.53 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.44 Total: -39.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.23 Total: 17.59 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.36 Total: -4.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.62 -10.07 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274464195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.713 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds