Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81401 * 109.46725 * 2 1 4 4 C 1.76201 * 102.99731 * 180.02562 * 3 2 1 5 5 C 1.38997 * 120.08108 * 0.29357 * 4 3 2 6 6 C 1.38066 * 119.91983 * 180.25107 * 5 4 3 7 7 C 1.38320 * 120.07733 * 359.45572 * 6 5 4 8 8 C 1.38284 * 120.16280 * 0.27107 * 7 6 5 9 9 C 1.50702 * 119.96070 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47504 * 89.99486 * 9 8 7 11 11 C 1.36941 * 119.99612 * 89.99920 * 10 9 8 12 12 H 1.07993 * 120.00465 * 304.47185 * 11 10 9 13 13 C 1.38821 * 119.99604 * 124.47442 * 11 10 9 14 14 N 1.31615 * 119.99780 * 164.67614 * 13 11 10 15 15 Si 1.86797 * 120.00087 * 344.66924 * 13 11 10 16 16 H 1.48507 * 109.46741 * 91.90575 * 15 13 11 17 17 H 1.48501 * 109.47208 * 211.90349 * 15 13 11 18 18 H 1.48501 * 109.47245 * 331.90850 * 15 13 11 19 19 C 1.46496 * 120.00407 * 270.00477 * 10 9 8 20 20 C 1.53006 * 117.49923 * 183.06839 * 19 10 9 21 21 C 1.52998 * 117.50104 * 114.40791 * 19 10 9 22 22 C 1.38100 * 120.08227 * 359.97438 * 8 7 6 23 23 H 1.09008 * 109.47047 * 300.00304 * 1 2 3 24 24 H 1.09001 * 109.47290 * 59.99988 * 1 2 3 25 25 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46982 * 240.00094 * 2 1 3 27 27 H 1.08998 * 109.47044 * 119.99280 * 2 1 3 28 28 H 1.08003 * 120.04255 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.95938 * 179.72444 * 6 5 4 30 30 H 1.08005 * 119.91917 * 180.29469 * 7 6 5 31 31 H 1.08997 * 109.47201 * 210.00137 * 9 8 7 32 32 H 1.09002 * 109.46963 * 329.99774 * 9 8 7 33 33 H 0.96996 * 120.00365 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.55127 * 328.73305 * 19 10 9 35 35 H 1.08997 * 117.49897 * 359.97438 * 20 19 10 36 36 H 1.09003 * 117.49497 * 145.01957 * 20 19 10 37 37 H 1.09001 * 117.49753 * 214.97984 * 21 19 10 38 38 H 1.08993 * 117.49720 * 359.97438 * 21 19 10 39 39 H 1.07992 * 120.04316 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8853 1.5118 -0.0008 5 6 4.4421 0.2382 -0.0074 6 6 5.8143 0.0864 -0.0027 7 6 6.6349 1.1999 -0.0029 8 6 6.0846 2.4686 -0.0020 9 6 6.9829 3.6786 -0.0028 10 7 7.2727 4.0709 -1.3842 11 6 6.4558 4.9612 -2.0287 12 1 5.3970 4.7637 -2.1070 13 6 6.9889 6.1177 -2.5814 14 7 6.2870 6.8170 -3.4478 15 14 8.7021 6.6815 -2.0953 16 1 9.6965 6.1159 -3.0424 17 1 8.7658 8.1645 -2.1378 18 1 9.0060 6.2120 -0.7197 19 6 8.4361 3.5108 -2.0761 20 6 8.7260 4.0140 -3.4917 21 6 8.1731 2.6026 -3.2789 22 6 4.7129 2.6281 -0.0016 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8020 -0.6317 -0.0124 29 1 6.2476 -0.9029 -0.0033 30 1 7.7081 1.0783 -0.0040 31 1 6.4855 4.5007 0.5117 32 1 7.9147 3.4397 0.5100 33 1 6.6592 7.6252 -3.8338 34 1 9.2900 3.2719 -1.4422 35 1 8.0509 4.7615 -3.9082 36 1 9.7707 4.1056 -3.7891 37 1 8.8542 1.7663 -3.4365 38 1 7.1344 2.4214 -3.5551 39 1 4.2838 3.6191 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274464195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = 54.967624 kcal Electronic energy + Delta-G solvation = -19161.681942 eV Core-core repulsion = 16389.200046 eV Total energy + Delta-G solvation = -2772.481896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20141 -38.78336 -35.06359 -34.16441 -33.74679 -31.86559 -31.58831 -27.61488 -25.33606 -24.75527 -23.26005 -23.20283 -22.40175 -21.50424 -18.85350 -18.06314 -17.32481 -16.81589 -16.70560 -16.13611 -15.88389 -15.78056 -15.28951 -15.20546 -14.75279 -14.22876 -14.15770 -13.63311 -13.49049 -13.31975 -13.06346 -12.90630 -12.58387 -12.43280 -12.38112 -12.17008 -11.97528 -11.81411 -11.78280 -11.27517 -11.06423 -10.86471 -10.61399 -10.47097 -9.69288 -8.40502 -8.35252 -8.12582 -5.86735 0.35081 0.49945 0.57962 1.43480 1.46234 1.52357 1.59266 2.47216 2.75591 3.02358 3.33017 3.44569 3.94606 3.96722 4.00490 4.03853 4.23832 4.26348 4.33142 4.42497 4.48355 4.51247 4.55278 4.70360 4.82705 4.87044 4.92531 4.95950 5.01639 5.05498 5.14143 5.19779 5.34187 5.37141 5.53414 5.57132 5.81043 5.99782 6.09107 6.29729 7.10581 7.57625 8.08046 8.96735 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.004959 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.688454 B = 5645.497723 C = 6216.956926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 S -0.180 6.180 4 C -0.094 4.094 5 C -0.144 4.144 6 C -0.100 4.100 7 C -0.114 4.114 8 C -0.076 4.076 9 C 0.179 3.821 10 N -0.576 5.576 11 C -0.272 4.272 12 H 0.014 0.986 13 C 0.012 3.988 14 N -0.948 5.948 15 Si 0.947 3.053 16 H -0.247 1.247 17 H -0.316 1.316 18 H -0.258 1.258 19 C 0.106 3.894 20 C -0.213 4.213 21 C -0.192 4.192 22 C -0.109 4.109 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.141 0.859 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.264 0.736 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -17.274 8.757 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.243 4.243 3 S 0.062 5.938 4 C -0.206 4.206 5 C -0.168 4.168 6 C -0.120 4.120 7 C -0.135 4.135 8 C -0.081 4.081 9 C 0.054 3.946 10 N -0.295 5.295 11 C -0.401 4.401 12 H 0.032 0.968 13 C -0.186 4.186 14 N -0.590 5.590 15 Si 0.773 3.227 16 H -0.171 1.171 17 H -0.245 1.245 18 H -0.182 1.182 19 C -0.001 4.001 20 C -0.251 4.251 21 C -0.232 4.232 22 C -0.133 4.133 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.161 0.839 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.285 -16.139 8.685 18.469 hybrid contribution 0.830 0.123 -0.474 0.963 sum -1.456 -16.016 8.211 18.057 Atomic orbital electron populations 1.21550 0.90522 1.04259 1.02976 1.23670 1.01241 0.93122 1.06312 1.85771 0.98945 1.15968 1.93109 1.21743 0.96360 0.96856 1.05659 1.21345 0.96664 0.94859 1.03931 1.21358 0.92602 0.99705 0.98308 1.21268 1.00893 0.91217 1.00137 1.20777 0.93561 0.97281 0.96434 1.20072 0.96747 0.92402 0.85386 1.43579 1.28349 1.47984 1.09599 1.18178 0.90325 0.98687 1.32956 0.96805 1.26457 1.01718 0.95138 0.95325 1.70005 1.40911 1.18160 1.29899 0.85801 0.81441 0.74934 0.80516 1.17143 1.24473 1.18216 1.21619 0.91664 0.99411 0.87412 1.23435 1.00980 0.98719 1.01999 1.23251 1.00074 0.93079 1.06805 1.20618 0.93822 0.96633 1.02197 0.91684 0.92269 0.88114 0.88935 0.88108 0.83857 0.82578 0.84135 0.93385 0.90050 0.92675 0.85658 0.90505 0.88054 0.87017 0.92687 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.92 71.98 0.71 -1.30 16 2 C -0.10 -1.82 5.05 71.98 0.36 -1.46 16 3 S -0.18 -5.45 21.92 -56.49 -1.24 -6.69 16 4 C -0.09 -3.17 6.11 22.62 0.14 -3.03 16 5 C -0.14 -3.91 9.36 22.41 0.21 -3.70 16 6 C -0.10 -2.53 10.04 22.25 0.22 -2.30 16 7 C -0.11 -3.36 9.70 22.30 0.22 -3.14 16 8 C -0.08 -2.80 5.46 -19.89 -0.11 -2.91 16 9 C 0.18 7.04 5.83 85.63 0.50 7.54 16 10 N -0.58 -26.64 2.03 -682.35 -1.39 -28.02 16 11 C -0.27 -15.57 9.17 84.03 0.77 -14.80 16 12 H 0.01 0.95 8.06 -2.91 -0.02 0.93 16 13 C 0.01 0.68 3.74 84.86 0.32 1.00 16 14 N -0.95 -59.59 13.97 21.65 0.30 -59.29 16 15 Si 0.95 45.40 24.88 68.60 1.71 47.11 16 16 H -0.25 -10.84 5.80 99.48 0.58 -10.26 16 17 H -0.32 -15.63 7.11 99.48 0.71 -14.93 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 C 0.11 4.20 5.16 44.99 0.23 4.44 16 20 C -0.21 -9.00 6.69 30.62 0.20 -8.80 16 21 C -0.19 -7.33 10.36 30.62 0.32 -7.01 16 22 C -0.11 -4.31 9.45 22.41 0.21 -4.09 16 23 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.09 1.65 7.73 -2.39 -0.02 1.64 16 27 H 0.10 1.61 7.76 -2.39 -0.02 1.60 16 28 H 0.14 2.95 5.88 -2.91 -0.02 2.94 16 29 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.05 2.03 7.98 -2.39 -0.02 2.01 16 32 H 0.08 2.64 8.02 -2.39 -0.02 2.62 16 33 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 35 H 0.08 3.99 5.08 -2.39 -0.01 3.97 16 36 H 0.10 3.70 7.86 -2.39 -0.02 3.68 16 37 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.05 2.46 8.14 -2.39 -0.02 2.45 16 39 H 0.09 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -70.01 328.57 4.58 -65.43 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.89 Total: 21.04 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 4.31 Total: -39.58 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.08 Total: -87.31 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.71 Total: 47.11 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.24 Total: -6.69 kcal Total: -70.01 4.58 -65.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274464195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.400 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds