Wall clock time and date at job start Mon Mar 30 2020 01:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34199 * 118.90181 * 2 1 4 4 C 1.41385 * 118.46037 * 0.55365 * 3 2 1 5 5 O 1.21813 * 120.00223 * 259.98078 * 4 3 2 6 6 N 1.34774 * 120.00059 * 79.98469 * 4 3 2 7 7 C 1.36931 * 120.00648 * 175.01216 * 6 4 3 8 8 H 1.08002 * 119.99658 * 0.02562 * 7 6 4 9 9 C 1.38969 * 120.00342 * 179.97438 * 7 6 4 10 10 N 1.31422 * 119.99899 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99786 * 180.27481 * 9 7 6 12 12 H 1.48503 * 109.46901 * 179.73067 * 11 9 7 13 13 H 1.48498 * 109.47187 * 299.72588 * 11 9 7 14 14 H 1.48493 * 109.47191 * 59.73063 * 11 9 7 15 15 C 1.50556 * 123.07898 * 180.28316 * 3 2 1 16 16 H 1.09002 * 109.47601 * 108.02120 * 15 3 2 17 17 C 1.52998 * 109.47304 * 228.02949 * 15 3 2 18 18 N 1.46023 * 109.44146 * 348.02422 * 15 3 2 19 19 N 1.39400 * 129.85640 * 192.05049 * 18 15 3 20 20 C 1.31036 * 106.74571 * 180.31269 * 19 18 15 21 21 N 1.33681 * 109.19556 * 359.91820 * 20 19 18 22 22 C 1.30489 * 109.54991 * 359.92147 * 21 20 19 23 23 N 1.37345 * 118.90686 * 180.27706 * 2 1 3 24 24 C 1.46498 * 121.34951 * 12.38607 * 23 2 1 25 25 H 1.08996 * 109.47055 * 84.81415 * 1 2 3 26 26 H 1.09006 * 109.46481 * 204.81499 * 1 2 3 27 27 H 1.08999 * 109.46891 * 324.80997 * 1 2 3 28 28 H 0.97006 * 120.00023 * 355.01233 * 6 4 3 29 29 H 0.97005 * 120.00025 * 179.97438 * 10 9 7 30 30 H 1.09002 * 109.47198 * 64.41825 * 17 15 3 31 31 H 1.08999 * 109.47308 * 184.42316 * 17 15 3 32 32 H 1.09000 * 109.47356 * 304.42362 * 17 15 3 33 33 H 1.07998 * 125.39735 * 179.97438 * 20 19 18 34 34 H 1.08996 * 109.47066 * 180.27385 * 24 23 2 35 35 H 1.09000 * 109.46900 * 300.27505 * 24 23 2 36 36 H 1.09004 * 109.47421 * 60.27416 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1556 1.1748 0.0000 4 6 1.3931 2.3654 0.0120 5 8 1.2104 2.9822 -1.0224 6 7 0.8685 2.8180 1.1680 7 6 0.2174 4.0223 1.1994 8 1 0.1240 4.6092 0.2976 9 6 -0.3240 4.4887 2.3913 10 7 -0.2107 3.7741 3.4885 11 14 -1.2188 6.1279 2.4323 12 1 -1.7042 6.3925 3.8106 13 1 -0.2893 7.2097 2.0188 14 1 -2.3741 6.0847 1.5005 15 6 3.6571 1.2845 -0.0062 16 1 3.9922 1.6304 -0.9841 17 6 4.1002 2.2812 1.0667 18 7 4.2412 -0.0242 0.2738 19 7 5.5552 -0.3672 0.5884 20 6 5.5789 -1.6681 0.7441 21 7 4.3506 -2.1569 0.5456 22 6 3.5321 -1.1803 0.2643 23 7 2.1709 -1.2023 -0.0058 24 6 1.4696 -2.4589 -0.2803 25 1 -0.3633 0.0929 -1.0234 26 1 -0.3632 -0.9329 0.4313 27 1 -0.3633 0.8399 0.5922 28 1 0.9521 2.2907 1.9779 29 1 -0.5882 4.0999 4.3206 30 1 3.8343 1.8970 2.0515 31 1 5.1798 2.4200 1.0101 32 1 3.6020 3.2367 0.9029 33 1 6.4520 -2.2524 0.9940 34 1 2.1761 -3.2874 -0.2313 35 1 0.6847 -2.6064 0.4615 36 1 1.0261 -2.4178 -1.2752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277327842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:13 Heat of formation + Delta-G solvation = 92.008121 kcal Electronic energy + Delta-G solvation = -22111.588736 eV Core-core repulsion = 18826.712574 eV Total energy + Delta-G solvation = -3284.876162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.30880 -39.54100 -37.70619 -35.34778 -34.01187 -32.37141 -31.24869 -30.83798 -29.87505 -27.80364 -26.40956 -25.06390 -23.49452 -22.18909 -21.16461 -20.14100 -18.36140 -18.09378 -17.27943 -16.56603 -15.97146 -15.41060 -15.01820 -14.66980 -14.39523 -14.27523 -14.01852 -13.46114 -13.19024 -12.83873 -12.74910 -12.37865 -12.31757 -12.00378 -11.81303 -11.71103 -11.61956 -11.23140 -11.12899 -10.79039 -10.50948 -10.32183 -9.94201 -9.66303 -9.58732 -9.37148 -8.61976 -8.07562 -7.45238 -6.52298 -3.92512 1.61928 2.01224 2.21676 2.72414 3.10998 3.14538 3.21074 3.25057 3.71469 4.11161 4.41983 4.52387 4.84483 4.93191 5.08011 5.20263 5.23031 5.33186 5.35167 5.40094 5.55235 5.66488 5.74845 5.86408 6.03716 6.16115 6.20020 6.34150 6.43168 6.49920 6.52277 6.66178 6.99447 7.35645 7.45248 7.94443 8.26363 8.48548 9.05725 9.41115 9.92031 10.64104 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.005458 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.940315 B = 5128.734850 C = 5562.196124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.166 3.834 3 C -0.240 4.240 4 C 0.498 3.502 5 O -0.590 6.590 6 N -0.546 5.546 7 C -0.304 4.304 8 H 0.105 0.895 9 C 0.027 3.973 10 N -0.894 5.894 11 Si 0.931 3.069 12 H -0.284 1.284 13 H -0.273 1.273 14 H -0.272 1.272 15 C 0.230 3.770 16 H 0.096 0.904 17 C -0.154 4.154 18 N -0.388 5.388 19 N -0.309 5.309 20 C 0.206 3.794 21 N -0.566 5.566 22 C 0.505 3.495 23 N -0.516 5.516 24 C 0.098 3.902 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.393 0.607 29 H 0.274 0.726 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -11.063 -2.988 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.066 3.934 3 C -0.253 4.253 4 C 0.284 3.716 5 O -0.476 6.476 6 N -0.181 5.181 7 C -0.433 4.433 8 H 0.123 0.877 9 C -0.176 4.176 10 N -0.535 5.535 11 Si 0.758 3.242 12 H -0.209 1.209 13 H -0.198 1.198 14 H -0.198 1.198 15 C 0.128 3.872 16 H 0.113 0.887 17 C -0.212 4.212 18 N -0.183 5.183 19 N -0.137 5.137 20 C -0.097 4.097 21 N -0.302 5.302 22 C 0.142 3.858 23 N -0.225 5.225 24 C -0.043 4.043 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.227 0.773 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.236 0.764 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.192 -10.510 -3.400 11.815 hybrid contribution -0.484 0.489 0.618 0.925 sum 3.708 -10.021 -2.782 11.041 Atomic orbital electron populations 1.21117 0.87787 1.04677 1.04500 1.19679 0.94455 0.82968 0.96308 1.19915 0.93865 0.94421 1.17106 1.15618 0.85200 0.85739 0.85087 1.90701 1.64518 1.60226 1.32135 1.42055 1.47867 1.19356 1.08847 1.19693 1.31046 0.95821 0.96761 0.87683 1.25305 0.97776 0.99757 0.94763 1.69615 1.45169 1.38605 1.00077 0.85914 0.79691 0.81417 0.77225 1.20945 1.19783 1.19764 1.19705 0.88312 0.78669 1.00498 0.88653 1.22099 1.02019 0.99214 0.97828 1.50453 1.05505 1.07530 1.54842 1.77849 0.95145 1.15370 1.25369 1.25915 0.95286 0.89693 0.98778 1.70201 1.01457 1.29008 1.29533 1.20250 0.86094 0.84303 0.95196 1.42594 1.01566 1.07417 1.70951 1.21882 0.97668 0.83364 1.01407 0.89572 0.90796 0.88070 0.77312 0.91591 0.91884 0.91375 0.89452 0.76449 0.88793 0.90945 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.90 36.00 0.32 -1.51 16 2 C 0.17 2.79 6.58 -81.55 -0.54 2.26 16 3 C -0.24 -4.66 5.10 -104.92 -0.54 -5.19 16 4 C 0.50 11.36 3.91 -15.06 -0.06 11.30 16 5 O -0.59 -15.60 16.67 5.09 0.08 -15.51 16 6 N -0.55 -13.07 4.44 -13.65 -0.06 -13.13 16 7 C -0.30 -7.95 9.67 -15.00 -0.15 -8.09 16 8 H 0.11 2.88 7.16 -52.49 -0.38 2.50 16 9 C 0.03 0.68 5.50 -17.46 -0.10 0.59 16 10 N -0.89 -23.23 13.05 55.50 0.72 -22.51 16 11 Si 0.93 20.08 29.55 -169.99 -5.02 15.05 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.23 4.22 3.90 -69.41 -0.27 3.95 16 16 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 17 C -0.15 -2.74 9.13 37.16 0.34 -2.40 16 18 N -0.39 -6.87 3.77 -56.89 -0.21 -7.09 16 19 N -0.31 -5.14 12.60 29.43 0.37 -4.77 16 20 C 0.21 2.93 13.03 -91.15 -1.19 1.74 16 21 N -0.57 -8.94 10.77 -15.00 -0.16 -9.10 16 22 C 0.50 8.52 8.22 -320.60 -2.64 5.89 16 23 N -0.52 -7.79 3.15 -120.64 -0.38 -8.17 16 24 C 0.10 1.03 9.87 59.85 0.59 1.62 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.07 0.85 6.50 -51.93 -0.34 0.51 16 27 H 0.10 1.79 6.37 -51.93 -0.33 1.46 16 28 H 0.39 9.33 7.86 -40.82 -0.32 9.01 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.69 7.25 -51.93 -0.38 1.31 16 33 H 0.22 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.09 0.95 7.60 -51.93 -0.39 0.56 16 35 H 0.07 0.64 7.09 -51.93 -0.37 0.27 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -31.12 306.05 -8.44 -39.57 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.18 Total: 10.88 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -4.22 Total: 10.16 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: 0.28 Total: -64.76 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.12 -8.44 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277327842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.574 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds