Wall clock time and date at job start Mon Mar 30 2020 01:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34199 * 118.90181 * 2 1 4 4 C 1.41385 * 118.46037 * 0.55365 * 3 2 1 5 5 O 1.21813 * 120.00223 * 259.98078 * 4 3 2 6 6 N 1.34774 * 120.00059 * 79.98469 * 4 3 2 7 7 C 1.36931 * 120.00648 * 175.01216 * 6 4 3 8 8 H 1.08002 * 119.99658 * 0.02562 * 7 6 4 9 9 C 1.38969 * 120.00342 * 179.97438 * 7 6 4 10 10 N 1.31422 * 119.99899 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99786 * 180.27481 * 9 7 6 12 12 H 1.48503 * 109.46901 * 179.73067 * 11 9 7 13 13 H 1.48498 * 109.47187 * 299.72588 * 11 9 7 14 14 H 1.48493 * 109.47191 * 59.73063 * 11 9 7 15 15 C 1.50556 * 123.07898 * 180.28316 * 3 2 1 16 16 H 1.09002 * 109.47601 * 108.02120 * 15 3 2 17 17 C 1.52998 * 109.47304 * 228.02949 * 15 3 2 18 18 N 1.46023 * 109.44146 * 348.02422 * 15 3 2 19 19 N 1.39400 * 129.85640 * 192.05049 * 18 15 3 20 20 C 1.31036 * 106.74571 * 180.31269 * 19 18 15 21 21 N 1.33681 * 109.19556 * 359.91820 * 20 19 18 22 22 C 1.30489 * 109.54991 * 359.92147 * 21 20 19 23 23 N 1.37345 * 118.90686 * 180.27706 * 2 1 3 24 24 C 1.46498 * 121.34951 * 12.38607 * 23 2 1 25 25 H 1.08996 * 109.47055 * 84.81415 * 1 2 3 26 26 H 1.09006 * 109.46481 * 204.81499 * 1 2 3 27 27 H 1.08999 * 109.46891 * 324.80997 * 1 2 3 28 28 H 0.97006 * 120.00023 * 355.01233 * 6 4 3 29 29 H 0.97005 * 120.00025 * 179.97438 * 10 9 7 30 30 H 1.09002 * 109.47198 * 64.41825 * 17 15 3 31 31 H 1.08999 * 109.47308 * 184.42316 * 17 15 3 32 32 H 1.09000 * 109.47356 * 304.42362 * 17 15 3 33 33 H 1.07998 * 125.39735 * 179.97438 * 20 19 18 34 34 H 1.08996 * 109.47066 * 180.27385 * 24 23 2 35 35 H 1.09000 * 109.46900 * 300.27505 * 24 23 2 36 36 H 1.09004 * 109.47421 * 60.27416 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1556 1.1748 0.0000 4 6 1.3931 2.3654 0.0120 5 8 1.2104 2.9822 -1.0224 6 7 0.8685 2.8180 1.1680 7 6 0.2174 4.0223 1.1994 8 1 0.1240 4.6092 0.2976 9 6 -0.3240 4.4887 2.3913 10 7 -0.2107 3.7741 3.4885 11 14 -1.2188 6.1279 2.4323 12 1 -1.7042 6.3925 3.8106 13 1 -0.2893 7.2097 2.0188 14 1 -2.3741 6.0847 1.5005 15 6 3.6571 1.2845 -0.0062 16 1 3.9922 1.6304 -0.9841 17 6 4.1002 2.2812 1.0667 18 7 4.2412 -0.0242 0.2738 19 7 5.5552 -0.3672 0.5884 20 6 5.5789 -1.6681 0.7441 21 7 4.3506 -2.1569 0.5456 22 6 3.5321 -1.1803 0.2643 23 7 2.1709 -1.2023 -0.0058 24 6 1.4696 -2.4589 -0.2803 25 1 -0.3633 0.0929 -1.0234 26 1 -0.3632 -0.9329 0.4313 27 1 -0.3633 0.8399 0.5922 28 1 0.9521 2.2907 1.9779 29 1 -0.5882 4.0999 4.3206 30 1 3.8343 1.8970 2.0515 31 1 5.1798 2.4200 1.0101 32 1 3.6020 3.2367 0.9029 33 1 6.4520 -2.2524 0.9940 34 1 2.1761 -3.2874 -0.2313 35 1 0.6847 -2.6064 0.4615 36 1 1.0261 -2.4178 -1.2752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277327842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:12 Heat of formation + Delta-G solvation = 74.312442 kcal Electronic energy + Delta-G solvation = -22112.356078 eV Core-core repulsion = 18826.712574 eV Total energy + Delta-G solvation = -3285.643505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.56667 -41.09594 -39.20904 -36.73516 -35.95221 -33.83542 -32.96853 -32.21272 -31.10918 -29.04982 -27.80126 -26.70048 -24.96791 -23.47823 -22.40196 -21.74785 -20.10491 -19.54860 -18.90062 -17.88473 -17.31773 -16.95677 -16.41754 -16.22917 -15.91598 -15.64680 -15.40367 -14.87308 -14.64374 -14.45914 -13.93156 -13.81336 -13.56373 -13.44174 -13.25902 -13.12112 -13.04471 -12.90384 -12.42940 -12.36570 -12.15011 -12.08120 -11.50174 -11.19223 -10.96920 -10.71548 -10.47620 -10.02893 -8.78157 -8.46762 -5.95140 0.26193 0.75951 0.94186 1.31085 1.44844 1.51250 1.54981 1.92274 2.02093 2.31701 3.03836 3.26333 3.28342 3.49594 3.67364 3.89728 3.94529 4.03659 4.11289 4.32362 4.47482 4.50285 4.60097 4.62017 4.66241 4.79721 4.90954 4.97476 5.02149 5.19460 5.21960 5.42087 5.45997 5.78790 5.98987 6.06011 6.55029 7.03752 7.09350 7.50108 8.04035 8.68960 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.005458 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.940315 B = 5128.734850 C = 5562.196124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.196 3.804 3 C -0.287 4.287 4 C 0.517 3.483 5 O -0.631 6.631 6 N -0.549 5.549 7 C -0.332 4.332 8 H 0.085 0.915 9 C -0.006 4.006 10 N -0.915 5.915 11 Si 0.991 3.009 12 H -0.274 1.274 13 H -0.272 1.272 14 H -0.269 1.269 15 C 0.238 3.762 16 H 0.086 0.914 17 C -0.140 4.140 18 N -0.401 5.401 19 N -0.334 5.334 20 C 0.217 3.783 21 N -0.566 5.566 22 C 0.489 3.511 23 N -0.511 5.511 24 C 0.088 3.912 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.393 0.607 29 H 0.278 0.722 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.265 0.735 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -12.992 -2.702 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 C -0.300 4.300 4 C 0.304 3.696 5 O -0.519 6.519 6 N -0.183 5.183 7 C -0.461 4.461 8 H 0.103 0.897 9 C -0.207 4.207 10 N -0.555 5.555 11 Si 0.815 3.185 12 H -0.198 1.198 13 H -0.198 1.198 14 H -0.194 1.194 15 C 0.135 3.865 16 H 0.104 0.896 17 C -0.198 4.198 18 N -0.196 5.196 19 N -0.162 5.162 20 C -0.086 4.086 21 N -0.301 5.301 22 C 0.126 3.874 23 N -0.219 5.219 24 C -0.052 4.052 25 H 0.116 0.884 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.227 0.773 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.280 0.720 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.033 -12.495 -3.104 13.491 hybrid contribution -0.384 0.904 0.509 1.106 sum 3.649 -11.591 -2.595 12.425 Atomic orbital electron populations 1.21169 0.86235 1.05542 1.04979 1.19866 0.95330 0.83039 0.92484 1.19553 0.94178 0.93933 1.22299 1.15940 0.83824 0.85955 0.83867 1.90656 1.65839 1.61956 1.33499 1.42022 1.48219 1.18926 1.09139 1.19672 1.32844 0.96964 0.96625 0.89709 1.26027 0.97906 1.02700 0.94057 1.69682 1.45566 1.39866 1.00436 0.85012 0.78491 0.77431 0.77598 1.19827 1.19766 1.19375 1.19420 0.87887 0.79308 0.99873 0.89619 1.21942 1.02504 0.98046 0.97319 1.50395 1.06197 1.07356 1.55649 1.77848 0.94807 1.16818 1.26693 1.26892 0.96006 0.89198 0.96460 1.70289 1.01861 1.28478 1.29493 1.20686 0.86894 0.84358 0.95441 1.42952 1.01157 1.08069 1.69735 1.22288 0.98147 0.81286 1.03433 0.88438 0.86767 0.91007 0.77348 0.91210 0.92840 0.90052 0.91724 0.71978 0.88185 0.88593 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.90 71.24 0.63 -2.78 16 2 C 0.20 6.37 6.58 40.77 0.27 6.64 16 3 C -0.29 -11.29 5.10 -20.06 -0.10 -11.39 16 4 C 0.52 24.46 3.91 85.02 0.33 24.79 16 5 O -0.63 -34.76 16.67 -4.71 -0.08 -34.84 16 6 N -0.55 -27.24 4.44 -315.28 -1.40 -28.64 16 7 C -0.33 -17.94 9.67 84.07 0.81 -17.13 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 C -0.01 -0.31 5.50 84.93 0.47 0.15 16 10 N -0.92 -47.84 13.05 21.67 0.28 -47.56 16 11 Si 0.99 41.27 29.55 68.60 2.03 43.30 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 15 C 0.24 8.91 3.90 44.29 0.17 9.08 16 16 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 17 C -0.14 -5.17 9.13 71.98 0.66 -4.51 16 18 N -0.40 -13.92 3.77 -333.91 -1.26 -15.18 16 19 N -0.33 -10.63 12.60 -60.81 -0.77 -11.40 16 20 C 0.22 5.57 13.03 180.53 2.35 7.92 16 21 N -0.57 -16.37 10.77 -201.36 -2.17 -18.54 16 22 C 0.49 15.66 8.22 260.72 2.14 17.80 16 23 N -0.51 -14.27 3.15 -535.58 -1.69 -15.95 16 24 C 0.09 1.52 9.87 127.77 1.26 2.78 16 25 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.11 2.23 6.50 -2.38 -0.02 2.21 16 27 H 0.07 2.52 6.37 -2.39 -0.02 2.51 16 28 H 0.39 19.30 7.86 -92.70 -0.73 18.57 16 29 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.06 2.65 7.25 -2.39 -0.02 2.63 16 33 H 0.26 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.10 1.67 7.60 -2.39 -0.02 1.65 16 35 H 0.10 1.25 7.09 -2.39 -0.02 1.24 16 36 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -68.69 306.05 4.35 -64.35 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.40 Total: 31.11 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 9.00 Total: 33.36 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -7.00 Total: -137.28 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.08 Total: -34.84 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -68.69 4.35 -64.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277327842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.660 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds