Wall clock time and date at job start Mon Mar 30 2020 02:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31936 * 119.59994 * 2 1 4 4 C 1.32033 * 121.68479 * 179.97438 * 3 2 1 5 5 F 1.35105 * 119.64639 * 179.97438 * 4 3 2 6 6 C 1.38565 * 120.70420 * 0.02562 * 4 3 2 7 7 C 1.38505 * 119.13120 * 359.76310 * 6 4 3 8 8 C 1.38100 * 119.60075 * 180.02562 * 2 1 3 9 9 C 1.50706 * 120.38722 * 359.97438 * 8 2 1 10 10 N 1.46902 * 109.47159 * 79.99874 * 9 8 2 11 11 C 1.46900 * 110.99746 * 190.00174 * 10 9 8 12 12 C 1.50698 * 109.46745 * 160.94402 * 11 10 9 13 13 H 1.07998 * 120.00365 * 355.62356 * 12 11 10 14 14 C 1.37882 * 119.99380 * 175.63082 * 12 11 10 15 15 N 1.31507 * 120.00427 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99307 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47319 * 60.00133 * 16 14 12 18 18 H 1.48510 * 109.46616 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47107 * 299.99684 * 16 14 12 20 20 C 1.46899 * 110.99651 * 66.04578 * 10 9 8 21 21 C 1.52999 * 109.47369 * 61.72758 * 20 10 9 22 22 C 1.47203 * 109.47290 * 183.47087 * 21 20 10 23 23 N 6.66078 * 121.69439 * 214.90373 * 2 1 3 24 24 H 1.09003 * 109.46695 * 269.97900 * 1 2 3 25 25 H 1.08995 * 109.46836 * 29.97666 * 1 2 3 26 26 H 1.08997 * 109.46658 * 149.97892 * 1 2 3 27 27 H 1.07996 * 120.43268 * 180.02562 * 6 4 3 28 28 H 1.08004 * 120.77377 * 180.25561 * 7 6 4 29 29 H 1.08999 * 109.46802 * 319.99639 * 9 8 2 30 30 H 1.09003 * 109.46908 * 199.99986 * 9 8 2 31 31 H 1.09002 * 109.46920 * 280.93801 * 11 10 9 32 32 H 1.08998 * 109.47117 * 40.94082 * 11 10 9 33 33 H 0.97000 * 120.00174 * 180.02562 * 15 14 12 34 34 H 1.09011 * 109.46673 * 181.72310 * 20 10 9 35 35 H 1.08995 * 109.47214 * 301.72180 * 20 10 9 36 36 H 1.08998 * 109.47095 * 303.47307 * 21 20 10 37 37 H 1.09004 * 109.47249 * 63.47136 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1472 0.0000 4 6 3.4782 1.1952 0.0005 5 9 4.1033 2.3929 0.0000 6 6 4.2286 0.0303 0.0005 7 6 3.5767 -1.1917 0.0050 8 6 2.1892 -1.2008 -0.0005 9 6 1.4354 -2.5058 -0.0005 10 7 0.9817 -2.8092 -1.3644 11 6 0.0469 -3.9424 -1.3683 12 6 -0.7446 -3.9362 -2.6506 13 1 -0.6217 -3.1287 -3.3572 14 6 -1.6258 -4.9614 -2.9217 15 7 -1.7752 -5.9449 -2.0616 16 14 -2.6075 -4.9533 -4.5111 17 1 -1.6766 -4.9650 -5.6679 18 1 -3.4756 -6.1571 -4.5627 19 1 -3.4502 -3.7319 -4.5661 20 6 2.1224 -3.0644 -2.2541 21 6 2.8988 -4.2831 -1.7511 22 6 4.0883 -4.4890 -2.5934 23 7 5.0065 -4.6479 -3.2429 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3632 -0.8898 -0.5142 27 1 5.3076 0.0747 0.0013 28 1 4.1353 -2.1160 0.0093 29 1 0.5723 -2.4267 0.6604 30 1 2.0901 -3.3035 0.3505 31 1 0.6061 -4.8749 -1.2910 32 1 -0.6332 -3.8553 -0.5210 33 1 -2.3948 -6.6663 -2.2525 34 1 1.7596 -3.2563 -3.2640 35 1 2.7782 -2.1940 -2.2628 36 1 3.2086 -4.1160 -0.7194 37 1 2.2613 -5.1659 -1.8006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278598178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:03 Heat of formation + Delta-G solvation = 6.039096 kcal Electronic energy + Delta-G solvation = -21145.447254 eV Core-core repulsion = 17836.923233 eV Total energy + Delta-G solvation = -3308.524021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.99834 -41.41915 -39.10918 -37.33314 -34.79406 -34.03073 -33.63556 -31.61836 -29.47063 -28.25318 -26.63025 -25.18515 -23.74409 -23.06354 -21.21561 -19.01477 -18.71415 -18.15646 -17.95772 -17.16397 -16.82249 -16.53718 -16.10319 -15.61674 -15.36840 -15.10181 -14.84533 -14.63136 -14.50433 -14.26041 -13.93727 -13.56689 -13.39752 -13.29212 -13.04295 -12.92210 -12.88995 -12.74272 -12.62043 -12.32852 -12.28970 -11.86619 -11.43007 -11.24933 -10.83875 -10.61585 -10.44816 -9.65734 -8.86908 -8.07089 -6.12343 -0.05147 0.19539 1.48409 1.50488 1.56122 1.79594 1.82934 2.47028 2.55818 2.61151 3.03926 3.27565 3.50345 3.58876 3.80920 3.87678 3.99958 4.18840 4.25767 4.42490 4.50524 4.64574 4.73805 4.80159 4.87610 4.90894 4.97499 5.07673 5.18193 5.31147 5.36962 5.46811 5.48969 5.73957 5.81144 6.22436 6.40444 6.62433 6.70487 6.74997 7.03670 7.56273 9.00981 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.005228 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.556298 B = 5354.846383 C = 6404.628281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 N -0.547 5.547 4 C 0.279 3.721 5 F -0.126 7.126 6 C -0.192 4.192 7 C -0.038 4.038 8 C -0.128 4.128 9 C 0.089 3.911 10 N -0.527 5.527 11 C 0.199 3.801 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.015 3.985 15 N -0.926 5.926 16 Si 0.943 3.057 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.274 1.274 20 C 0.074 3.926 21 C -0.063 4.063 22 C 0.244 3.756 23 N -0.495 5.495 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.004 0.996 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 7.452 7.739 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.037 3.963 3 N -0.263 5.263 4 C 0.126 3.874 5 F -0.105 7.105 6 C -0.213 4.213 7 C -0.063 4.063 8 C -0.131 4.131 9 C -0.039 4.039 10 N -0.249 5.249 11 C 0.074 3.926 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.184 4.184 15 N -0.568 5.568 16 Si 0.770 3.230 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.200 1.200 20 C -0.056 4.056 21 C -0.105 4.105 22 C -0.073 4.073 23 N -0.174 5.174 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.189 0.811 28 H 0.191 0.809 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.022 0.978 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.155 0.845 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.448 8.295 6.619 14.209 hybrid contribution -0.169 -1.108 -0.470 1.216 sum 9.280 7.187 6.149 13.251 Atomic orbital electron populations 1.20880 0.87457 1.04485 1.03779 1.21070 0.97418 0.86038 0.91811 1.66778 1.09154 1.32833 1.17555 1.18450 0.87810 0.81405 0.99734 1.91579 1.80517 1.44782 1.93608 1.21998 1.02981 0.90764 1.05538 1.21769 0.93152 0.98806 0.92599 1.20771 0.94520 0.96153 1.01668 1.21115 0.99250 0.92075 0.91413 1.62219 1.13664 1.41490 1.07566 1.19576 0.90218 0.86898 0.95928 1.21433 1.22133 1.06351 1.05075 0.92573 1.25533 0.98211 0.95524 0.99125 1.69994 1.37959 1.11806 1.36992 0.85841 0.78922 0.77157 0.81058 1.20224 1.21587 1.19958 1.21967 0.91137 0.94543 0.97977 1.20230 0.88337 1.03539 0.98393 1.29387 0.93625 0.91431 0.92874 1.81193 1.13829 1.10858 1.11472 0.89021 0.91252 0.88745 0.81124 0.80936 0.89220 0.91071 0.97817 0.96646 0.93051 0.91623 0.90367 0.84509 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.43 71.24 0.67 -2.06 16 2 C 0.17 4.60 6.78 42.51 0.29 4.89 16 3 N -0.55 -16.01 10.29 -184.94 -1.90 -17.91 16 4 C 0.28 7.24 8.41 84.74 0.71 7.95 16 5 F -0.13 -3.32 17.29 44.97 0.78 -2.55 16 6 C -0.19 -3.70 10.09 22.41 0.23 -3.47 16 7 C -0.04 -0.67 8.88 22.46 0.20 -0.47 16 8 C -0.13 -2.88 4.57 -19.77 -0.09 -2.97 16 9 C 0.09 2.07 4.01 85.56 0.34 2.41 16 10 N -0.53 -16.19 3.96 -905.34 -3.59 -19.78 16 11 C 0.20 8.04 4.63 85.56 0.40 8.43 16 12 C -0.51 -24.63 8.61 25.60 0.22 -24.41 16 13 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 14 C 0.01 0.74 5.46 84.66 0.46 1.20 16 15 N -0.93 -49.50 13.29 21.45 0.28 -49.21 16 16 Si 0.94 41.25 29.54 68.60 2.03 43.27 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.07 2.05 4.93 86.30 0.43 2.48 16 21 C -0.06 -1.46 5.08 28.79 0.15 -1.31 16 22 C 0.24 6.50 15.43 89.44 1.38 7.88 16 23 N -0.50 -15.77 18.54 20.01 0.37 -15.40 16 24 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 26 H 0.09 2.66 6.33 -2.39 -0.02 2.64 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.17 1.97 7.76 -2.91 -0.02 1.94 16 29 H 0.09 2.13 6.98 -2.39 -0.02 2.12 16 30 H 0.07 1.29 5.87 -2.39 -0.01 1.28 16 31 H 0.00 0.17 5.82 -2.39 -0.01 0.16 16 32 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 33 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.07 2.19 7.56 -2.38 -0.02 2.18 16 35 H 0.08 1.95 6.57 -2.39 -0.02 1.93 16 36 H 0.14 2.14 5.85 -2.39 -0.01 2.12 16 37 H 0.11 2.98 6.33 -2.38 -0.02 2.96 16 Total: -1.00 -60.44 317.80 4.45 -55.98 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.10 Total: 5.04 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.38 Total: 0.55 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -4.83 Total: -102.31 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -60.44 4.45 -55.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278598178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.021 kcal (2) G-P(sol) polarization free energy of solvation -60.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds