Wall clock time and date at job start Mon Mar 30 2020 01:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46848 * 220.10253 * 3 2 1 5 5 C 1.36934 * 120.00220 * 264.38653 * 4 3 2 6 6 H 1.07996 * 119.99988 * 198.55056 * 5 4 3 7 7 C 1.38814 * 119.99903 * 18.54955 * 5 4 3 8 8 N 1.31618 * 119.99804 * 11.34122 * 7 5 4 9 9 Si 1.86794 * 119.99982 * 191.33881 * 7 5 4 10 10 H 1.48501 * 109.47281 * 84.97923 * 9 7 5 11 11 H 1.48495 * 109.47340 * 204.97970 * 9 7 5 12 12 H 1.48501 * 109.47095 * 324.98218 * 9 7 5 13 13 C 1.46507 * 119.99809 * 84.38983 * 4 3 2 14 14 C 1.52997 * 109.46934 * 269.99978 * 13 4 3 15 15 C 1.52996 * 109.46961 * 180.02562 * 14 13 4 16 16 O 1.42900 * 109.47239 * 179.97438 * 15 14 13 17 17 C 1.35949 * 117.00062 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03282 * 0.27998 * 17 16 15 19 19 C 1.38143 * 119.97132 * 180.25184 * 18 17 16 20 20 C 1.38460 * 120.02725 * 359.46738 * 19 18 17 21 21 F 1.35102 * 119.96555 * 180.29853 * 20 19 18 22 22 C 1.38454 * 120.06218 * 0.27721 * 20 19 18 23 23 C 1.38144 * 120.02914 * 359.97438 * 22 20 19 24 24 H 4.40639 * 5.51541 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47134 * 100.10463 * 3 2 1 26 26 H 1.09000 * 109.47322 * 340.09958 * 3 2 1 27 27 H 0.96999 * 119.99593 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47184 * 149.99835 * 13 4 3 29 29 H 1.09004 * 109.46918 * 30.00019 * 13 4 3 30 30 H 1.08999 * 109.47301 * 59.99929 * 14 13 4 31 31 H 1.09004 * 109.47352 * 299.99775 * 14 13 4 32 32 H 1.08999 * 109.47183 * 59.99841 * 15 14 13 33 33 H 1.08999 * 109.47598 * 300.00071 * 15 14 13 34 34 H 1.08004 * 120.01485 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.98734 * 179.74566 * 19 18 17 36 36 H 1.07999 * 119.98563 * 179.97438 * 22 20 19 37 37 H 1.08000 * 120.01603 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0574 0.8898 5 6 3.4708 2.2820 0.3780 6 1 4.0978 2.9515 0.9481 7 6 3.0065 2.6629 -0.8735 8 7 2.0708 1.9562 -1.4713 9 14 3.7096 4.1783 -1.7091 10 1 4.9502 3.8110 -2.4380 11 1 2.7144 4.7214 -2.6682 12 1 4.0233 5.2074 -0.6854 13 6 3.2611 0.8039 2.3271 14 6 1.9517 1.1719 3.0278 15 6 2.0848 0.9078 4.5289 16 8 0.8621 1.2521 5.1834 17 6 0.8121 1.0753 6.5304 18 6 1.9192 0.5863 7.2080 19 6 1.8652 0.4022 8.5761 20 6 0.7103 0.7161 9.2724 21 9 0.6610 0.5413 10.6111 22 6 -0.3937 1.2093 8.5981 23 6 -0.3442 1.3894 7.2293 24 1 -1.0502 -0.0001 -0.0003 25 1 3.0092 0.1811 -1.0117 26 1 3.0098 -0.9655 0.3498 27 1 1.7466 2.2221 -2.3460 28 1 4.0724 1.4087 2.7323 29 1 3.4773 -0.2516 2.4921 30 1 1.1404 0.5672 2.6226 31 1 1.7354 2.2275 2.8627 32 1 2.8961 1.5129 4.9337 33 1 2.3013 -0.1476 4.6944 34 1 2.8218 0.3460 6.6658 35 1 2.7257 0.0176 9.1033 36 1 -1.2940 1.4533 9.1424 37 1 -1.2054 1.7745 6.7036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281389164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:55 Heat of formation + Delta-G solvation = 20.317322 kcal Electronic energy + Delta-G solvation = -20223.092179 eV Core-core repulsion = 16882.894557 eV Total energy + Delta-G solvation = -3340.197622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.94304 -40.10333 -37.43111 -36.32041 -32.83004 -31.53456 -31.40166 -30.36692 -29.12854 -26.24618 -25.60797 -23.49768 -22.54234 -21.62296 -20.40974 -18.32926 -17.50153 -17.41978 -16.70361 -16.38762 -16.04490 -15.58161 -15.08036 -14.80209 -14.31497 -13.91984 -13.79637 -13.54817 -13.25800 -13.06678 -12.89072 -12.59332 -11.94430 -11.77984 -11.41314 -11.25094 -11.13266 -10.86782 -10.73987 -10.65130 -10.27470 -10.17619 -9.88376 -9.36515 -8.99820 -8.81613 -8.37234 -8.17438 -7.04139 -5.79847 -3.28011 0.98728 1.09226 3.22022 3.35260 3.41139 3.42432 3.43254 4.16196 4.18117 4.39885 4.51172 4.52574 4.61288 4.94938 5.11239 5.23072 5.25620 5.34766 5.40278 5.52333 5.70189 5.82090 5.88185 5.95481 5.97158 5.98549 6.12480 6.20534 6.33215 6.57797 6.70488 6.75147 7.00028 7.32417 7.42824 7.48355 7.68909 8.27216 9.09332 9.20292 9.72488 10.17744 11.22304 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.003187 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.969406 B = 8783.276151 C = 9089.704761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.088 4.088 3 C 0.264 3.736 4 N -0.586 5.586 5 C -0.262 4.262 6 H 0.076 0.924 7 C 0.001 3.999 8 N -0.897 5.897 9 Si 0.909 3.091 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.154 3.846 14 C -0.141 4.141 15 C 0.061 3.939 16 O -0.308 6.308 17 C 0.132 3.868 18 C -0.185 4.185 19 C -0.111 4.111 20 C 0.047 3.953 21 F -0.145 7.145 22 C -0.113 4.113 23 C -0.130 4.130 24 H 0.189 0.811 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.255 0.745 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -4.163 16.205 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 C -0.091 4.091 3 C 0.139 3.861 4 N -0.305 5.305 5 C -0.391 4.391 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.542 5.542 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.027 3.973 14 C -0.181 4.181 15 C -0.015 4.015 16 O -0.221 6.221 17 C 0.085 3.915 18 C -0.204 4.204 19 C -0.130 4.130 20 C 0.027 3.973 21 F -0.124 7.124 22 C -0.132 4.132 23 C -0.149 4.149 24 H 0.206 0.794 25 H 0.127 0.873 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.155 -4.042 15.915 16.461 hybrid contribution -0.051 0.913 -0.187 0.934 sum -1.206 -3.128 15.728 16.081 Atomic orbital electron populations 1.24181 0.95360 1.06988 1.06406 1.24339 0.95294 0.94467 0.95033 1.18003 0.82741 0.88009 0.97303 1.44150 1.74661 1.11551 1.00159 1.19275 1.24917 0.93944 1.00930 0.90653 1.25011 0.97056 0.98544 0.99097 1.70017 1.28101 1.39992 1.16048 0.86204 0.78124 0.82454 0.79306 1.21332 1.21754 1.20626 1.20792 0.93567 0.97911 0.85071 1.22449 1.02747 1.03826 0.89101 1.23106 0.84175 0.99408 0.94794 1.86210 1.39005 1.80818 1.16103 1.19180 0.93918 0.94425 0.83951 1.21205 0.99293 1.05359 0.94495 1.20925 0.97272 1.00602 0.94213 1.17552 0.96106 1.06146 0.77457 1.91472 1.97016 1.93754 1.30189 1.20927 0.98052 1.00110 0.94072 1.20341 0.97649 1.04086 0.92786 0.79417 0.87319 0.95035 0.93411 0.93137 0.93964 0.91170 0.90928 0.92240 0.92363 0.84263 0.84647 0.84290 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.07 19.25 29.55 0.57 -6.50 16 2 C -0.09 -2.12 10.58 -37.12 -0.39 -2.52 16 3 C 0.26 6.15 5.45 -6.83 -0.04 6.11 16 4 N -0.59 -13.77 2.50 -176.56 -0.44 -14.21 16 5 C -0.26 -6.78 9.72 -15.06 -0.15 -6.93 16 6 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 7 C 0.00 0.03 5.12 -17.43 -0.09 -0.05 16 8 N -0.90 -24.92 8.96 55.49 0.50 -24.42 16 9 Si 0.91 21.18 29.57 -169.99 -5.03 16.15 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.15 2.90 5.70 -4.04 -0.02 2.87 16 14 C -0.14 -2.56 5.77 -26.73 -0.15 -2.72 16 15 C 0.06 0.86 4.74 37.16 0.18 1.04 16 16 O -0.31 -4.73 10.14 -19.58 -0.20 -4.93 16 17 C 0.13 1.73 6.69 -39.23 -0.26 1.47 16 18 C -0.18 -2.10 9.04 -39.44 -0.36 -2.45 16 19 C -0.11 -1.17 10.02 -39.53 -0.40 -1.57 16 20 C 0.05 0.52 7.30 -39.42 -0.29 0.23 16 21 F -0.15 -1.68 17.27 2.25 0.04 -1.64 16 22 C -0.11 -1.18 10.02 -39.54 -0.40 -1.57 16 23 C -0.13 -1.51 9.98 -39.44 -0.39 -1.90 16 24 H 0.19 3.65 7.80 -54.08 -0.42 3.22 16 25 H 0.11 2.78 6.19 -51.93 -0.32 2.45 16 26 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 30 H 0.07 1.42 7.21 -51.93 -0.37 1.05 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 33 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 34 H 0.14 1.37 6.30 -52.48 -0.33 1.04 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -29.18 324.36 -7.16 -36.33 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.73 Total: 2.32 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.19 Total: -14.49 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.05 Total: -38.63 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.18 -7.16 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281389164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.651 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds