Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46848 * 220.10253 * 3 2 1 5 5 C 1.36934 * 120.00220 * 264.38653 * 4 3 2 6 6 H 1.07996 * 119.99988 * 198.55056 * 5 4 3 7 7 C 1.38814 * 119.99903 * 18.54955 * 5 4 3 8 8 N 1.31618 * 119.99804 * 11.34122 * 7 5 4 9 9 Si 1.86794 * 119.99982 * 191.33881 * 7 5 4 10 10 H 1.48501 * 109.47281 * 84.97923 * 9 7 5 11 11 H 1.48495 * 109.47340 * 204.97970 * 9 7 5 12 12 H 1.48501 * 109.47095 * 324.98218 * 9 7 5 13 13 C 1.46507 * 119.99809 * 84.38983 * 4 3 2 14 14 C 1.52997 * 109.46934 * 269.99978 * 13 4 3 15 15 C 1.52996 * 109.46961 * 180.02562 * 14 13 4 16 16 O 1.42900 * 109.47239 * 179.97438 * 15 14 13 17 17 C 1.35949 * 117.00062 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03282 * 0.27998 * 17 16 15 19 19 C 1.38143 * 119.97132 * 180.25184 * 18 17 16 20 20 C 1.38460 * 120.02725 * 359.46738 * 19 18 17 21 21 F 1.35102 * 119.96555 * 180.29853 * 20 19 18 22 22 C 1.38454 * 120.06218 * 0.27721 * 20 19 18 23 23 C 1.38144 * 120.02914 * 359.97438 * 22 20 19 24 24 H 4.40639 * 5.51541 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47134 * 100.10463 * 3 2 1 26 26 H 1.09000 * 109.47322 * 340.09958 * 3 2 1 27 27 H 0.96999 * 119.99593 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47184 * 149.99835 * 13 4 3 29 29 H 1.09004 * 109.46918 * 30.00019 * 13 4 3 30 30 H 1.08999 * 109.47301 * 59.99929 * 14 13 4 31 31 H 1.09004 * 109.47352 * 299.99775 * 14 13 4 32 32 H 1.08999 * 109.47183 * 59.99841 * 15 14 13 33 33 H 1.08999 * 109.47598 * 300.00071 * 15 14 13 34 34 H 1.08004 * 120.01485 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.98734 * 179.74566 * 19 18 17 36 36 H 1.07999 * 119.98563 * 179.97438 * 22 20 19 37 37 H 1.08000 * 120.01603 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0574 0.8898 5 6 3.4708 2.2820 0.3780 6 1 4.0978 2.9515 0.9481 7 6 3.0065 2.6629 -0.8735 8 7 2.0708 1.9562 -1.4713 9 14 3.7096 4.1783 -1.7091 10 1 4.9502 3.8110 -2.4380 11 1 2.7144 4.7214 -2.6682 12 1 4.0233 5.2074 -0.6854 13 6 3.2611 0.8039 2.3271 14 6 1.9517 1.1719 3.0278 15 6 2.0848 0.9078 4.5289 16 8 0.8621 1.2521 5.1834 17 6 0.8121 1.0753 6.5304 18 6 1.9192 0.5863 7.2080 19 6 1.8652 0.4022 8.5761 20 6 0.7103 0.7161 9.2724 21 9 0.6610 0.5413 10.6111 22 6 -0.3937 1.2093 8.5981 23 6 -0.3442 1.3894 7.2293 24 1 -1.0502 -0.0001 -0.0003 25 1 3.0092 0.1811 -1.0117 26 1 3.0098 -0.9655 0.3498 27 1 1.7466 2.2221 -2.3460 28 1 4.0724 1.4087 2.7323 29 1 3.4773 -0.2516 2.4921 30 1 1.1404 0.5672 2.6226 31 1 1.7354 2.2275 2.8627 32 1 2.8961 1.5129 4.9337 33 1 2.3013 -0.1476 4.6944 34 1 2.8218 0.3460 6.6658 35 1 2.7257 0.0176 9.1033 36 1 -1.2940 1.4533 9.1424 37 1 -1.2054 1.7745 6.7036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281389164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = 6.155221 kcal Electronic energy + Delta-G solvation = -20223.706293 eV Core-core repulsion = 16882.894557 eV Total energy + Delta-G solvation = -3340.811736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.81441 -41.07248 -38.55496 -37.90790 -34.40432 -33.39128 -32.33941 -31.89897 -30.16095 -28.01310 -27.14273 -24.66750 -23.66811 -22.81089 -21.90193 -19.38079 -19.24413 -18.41638 -18.19512 -17.54339 -17.18456 -16.87615 -16.49659 -15.74039 -15.60626 -15.53454 -15.02498 -14.87014 -14.55579 -14.41122 -14.01551 -13.67028 -13.27529 -13.20855 -13.05285 -12.92298 -12.66880 -12.40714 -12.19667 -12.10003 -11.81398 -11.70361 -11.41902 -10.88728 -10.64692 -10.22539 -10.18691 -9.10445 -8.92370 -7.79159 -5.27336 0.16451 0.20252 1.49685 1.50449 1.57775 2.17189 2.38256 2.54594 2.57074 2.62764 3.32189 3.34675 3.68992 3.79246 3.85090 4.02561 4.09993 4.13253 4.22752 4.36078 4.46247 4.52621 4.58835 4.78539 4.86215 4.91445 4.99093 5.11951 5.13566 5.24906 5.26378 5.44742 5.47089 5.65735 5.73413 5.73873 6.33252 6.42684 7.13968 7.38212 7.85159 8.25871 9.20749 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.003187 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.969406 B = 8783.276151 C = 9089.704761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.117 4.117 3 C 0.265 3.735 4 N -0.602 5.602 5 C -0.264 4.264 6 H 0.079 0.921 7 C -0.051 4.051 8 N -0.922 5.922 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.303 1.303 12 H -0.274 1.274 13 C 0.151 3.849 14 C -0.127 4.127 15 C 0.069 3.931 16 O -0.334 6.334 17 C 0.108 3.892 18 C -0.184 4.184 19 C -0.110 4.110 20 C 0.037 3.963 21 F -0.148 7.148 22 C -0.109 4.109 23 C -0.139 4.139 24 H 0.216 0.784 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.245 0.755 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -4.535 18.125 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.120 4.120 3 C 0.140 3.860 4 N -0.321 5.321 5 C -0.394 4.394 6 H 0.097 0.903 7 C -0.246 4.246 8 N -0.568 5.568 9 Si 0.796 3.204 10 H -0.209 1.209 11 H -0.230 1.230 12 H -0.199 1.199 13 C 0.025 3.975 14 C -0.167 4.167 15 C -0.006 4.006 16 O -0.248 6.248 17 C 0.062 3.938 18 C -0.203 4.203 19 C -0.128 4.128 20 C 0.018 3.982 21 F -0.127 7.127 22 C -0.128 4.128 23 C -0.157 4.157 24 H 0.232 0.768 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.459 -4.421 17.878 18.423 hybrid contribution -0.290 0.992 -0.656 1.224 sum -0.749 -3.429 17.222 17.576 Atomic orbital electron populations 1.24932 0.96376 1.06205 1.05491 1.24742 0.96106 0.95259 0.95898 1.17940 0.82591 0.89301 0.96215 1.44332 1.74728 1.10833 1.02249 1.19584 1.24179 0.94681 1.00940 0.90323 1.25664 0.97835 1.01109 0.99998 1.70207 1.29512 1.41303 1.15756 0.85290 0.77125 0.79848 0.78130 1.20903 1.22973 1.19924 1.20973 0.94015 0.99914 0.82595 1.22126 1.01417 1.00923 0.92245 1.22923 0.84500 1.01150 0.91996 1.86135 1.39405 1.81657 1.17595 1.19433 0.95241 0.96050 0.83086 1.21380 0.99273 1.04779 0.94860 1.21186 0.97832 0.99842 0.93981 1.17781 0.96679 1.06292 0.77443 1.91468 1.97058 1.93788 1.30393 1.21145 0.98797 0.99225 0.93628 1.20517 0.97665 1.04225 0.93332 0.76765 0.90146 0.91998 0.94507 0.91813 0.91145 0.93646 0.94362 0.90385 0.90056 0.82658 0.82355 0.82100 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.13 19.25 74.32 1.43 -12.70 16 2 C -0.12 -5.66 10.58 31.13 0.33 -5.33 16 3 C 0.26 12.31 5.45 84.57 0.46 12.77 16 4 N -0.60 -28.03 2.50 -712.53 -1.78 -29.82 16 5 C -0.26 -13.67 9.72 84.03 0.82 -12.86 16 6 H 0.08 3.93 7.84 -2.91 -0.02 3.90 16 7 C -0.05 -2.73 5.12 84.86 0.43 -2.29 16 8 N -0.92 -52.23 8.96 21.65 0.19 -52.04 16 9 Si 0.97 44.01 29.57 68.60 2.03 46.04 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.15 5.44 5.70 86.38 0.49 5.93 16 14 C -0.13 -4.55 5.77 30.59 0.18 -4.37 16 15 C 0.07 1.85 4.74 71.98 0.34 2.19 16 16 O -0.33 -9.93 10.14 -92.98 -0.94 -10.88 16 17 C 0.11 2.66 6.69 22.50 0.15 2.82 16 18 C -0.18 -3.72 9.04 22.36 0.20 -3.52 16 19 C -0.11 -2.02 10.02 22.30 0.22 -1.79 16 20 C 0.04 0.75 7.30 22.37 0.16 0.91 16 21 F -0.15 -3.11 17.27 44.97 0.78 -2.33 16 22 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 23 C -0.14 -3.04 9.98 22.36 0.22 -2.82 16 24 H 0.22 8.11 7.80 -4.41 -0.03 8.08 16 25 H 0.08 4.20 6.19 -2.39 -0.01 4.18 16 26 H 0.06 2.44 7.97 -2.39 -0.02 2.42 16 27 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 29 H 0.07 2.14 7.95 -2.39 -0.02 2.12 16 30 H 0.04 1.84 7.21 -2.39 -0.02 1.82 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.78 7.65 -2.39 -0.02 1.77 16 33 H 0.08 1.79 7.67 -2.39 -0.02 1.78 16 34 H 0.16 2.54 6.30 -2.91 -0.02 2.52 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -63.06 324.36 7.00 -56.06 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.06 Total: 15.88 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 5.67 Total: -22.91 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.59 Total: -81.86 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.94 Total: -10.88 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.06 7.00 -56.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281389164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.217 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds