Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81396 * 102.99867 * 2 1 4 4 C 1.52998 * 112.85476 * 294.59797 * 3 2 1 5 5 N 1.46499 * 109.46881 * 292.89652 * 4 3 2 6 6 C 1.38860 * 119.99795 * 183.89886 * 5 4 3 7 7 C 1.39561 * 119.84448 * 0.24980 * 6 5 4 8 8 C 1.36342 * 120.16301 * 180.25225 * 7 6 5 9 9 C 1.40888 * 119.83122 * 359.49790 * 8 7 6 10 10 C 1.41135 * 120.15119 * 180.27036 * 9 8 7 11 11 H 1.07998 * 119.99818 * 153.73565 * 10 9 8 12 12 C 1.39869 * 120.00445 * 333.73507 * 10 9 8 13 13 N 1.30905 * 119.99578 * 345.34132 * 12 10 9 14 14 Si 1.86801 * 120.00163 * 165.33706 * 12 10 9 15 15 H 1.48495 * 109.46925 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46874 * 120.00118 * 14 12 10 17 17 H 1.48499 * 109.46972 * 240.00092 * 14 12 10 18 18 C 1.40881 * 119.69116 * 0.25449 * 9 8 7 19 19 C 1.36337 * 119.83905 * 359.97438 * 18 9 8 20 20 C 1.53791 * 113.68652 * 65.86504 * 3 2 1 21 21 C 1.53781 * 87.07984 * 139.99022 * 20 3 2 22 22 C 1.53783 * 87.08477 * 334.56579 * 21 20 3 23 23 H 1.09007 * 109.46669 * 185.29015 * 1 2 3 24 24 H 1.09003 * 109.46981 * 305.28524 * 1 2 3 25 25 H 1.08992 * 109.47462 * 65.29086 * 1 2 3 26 26 H 1.08997 * 109.47331 * 172.89733 * 4 3 2 27 27 H 1.09005 * 109.46986 * 52.89321 * 4 3 2 28 28 H 0.97004 * 120.00212 * 3.89996 * 5 4 3 29 29 H 1.08002 * 119.92062 * 0.02562 * 7 6 5 30 30 H 1.08004 * 120.08360 * 179.76734 * 8 7 6 31 31 H 0.96999 * 119.99566 * 179.97438 * 13 12 10 32 32 H 1.08001 * 120.07756 * 180.02562 * 18 9 8 33 33 H 1.07992 * 119.92171 * 180.02562 * 19 18 9 34 34 H 1.09002 * 113.61346 * 254.53317 * 20 3 2 35 35 H 1.08997 * 113.61462 * 25.44732 * 20 3 2 36 36 H 1.08994 * 113.61754 * 220.01730 * 21 20 3 37 37 H 1.09005 * 113.68863 * 89.12601 * 21 20 3 38 38 H 1.08991 * 113.61879 * 270.88811 * 22 21 20 39 39 H 1.09000 * 113.61424 * 139.97777 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7838 2.4785 -1.2819 5 7 2.5753 1.9822 -2.4104 6 6 2.4124 2.5405 -3.6714 7 6 1.4977 3.5777 -3.8589 8 6 1.3289 4.1271 -5.0952 9 6 2.0883 3.6523 -6.1828 10 6 1.9231 4.2200 -7.4643 11 1 2.7348 4.1919 -8.1761 12 6 0.7081 4.8191 -7.8126 13 7 -0.3580 4.6095 -7.0824 14 14 0.6068 5.9182 -9.3197 15 1 1.9402 5.9922 -9.9689 16 1 -0.3790 5.3556 -10.2772 17 1 0.1783 7.2801 -8.9111 18 6 3.0135 2.6085 -5.9850 19 6 3.1685 2.0654 -4.7441 20 6 1.7999 2.4990 1.2852 21 6 3.1299 3.2652 1.1922 22 6 3.6763 2.0640 0.4027 23 1 -0.3633 -1.0234 0.0948 24 1 -0.3633 0.5936 0.8389 25 1 -0.3634 0.4295 -0.9335 26 1 1.9392 3.5518 -1.1734 27 1 0.7275 2.2808 -1.4641 28 1 3.2130 1.2636 -2.2768 29 1 0.9194 3.9436 -3.0233 30 1 0.6179 4.9272 -5.2396 31 1 -1.2005 5.0252 -7.3237 32 1 3.5993 2.2401 -6.8142 33 1 3.8777 1.2655 -4.5909 34 1 0.9216 3.1321 1.1589 35 1 1.7315 1.8472 2.1562 36 1 3.6174 3.4124 2.1559 37 1 3.0674 4.1816 0.6052 38 1 4.1208 1.2933 1.0323 39 1 4.3128 2.3458 -0.4361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284282202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = 39.773553 kcal Electronic energy + Delta-G solvation = -18896.573805 eV Core-core repulsion = 16123.433045 eV Total energy + Delta-G solvation = -2773.140760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45379 -37.68732 -34.70243 -32.79903 -29.52239 -29.39381 -28.86400 -27.00563 -25.82174 -24.33280 -23.41204 -21.04453 -20.01881 -18.91694 -17.18103 -16.95707 -16.21440 -15.42177 -14.99148 -14.86153 -14.33773 -13.87863 -13.72067 -13.47136 -13.10247 -12.89454 -12.68915 -12.56066 -12.36561 -12.15835 -11.87435 -11.63823 -11.24180 -11.06295 -11.03191 -10.82213 -10.60622 -10.51851 -10.40819 -9.72874 -9.64748 -9.26021 -9.21841 -8.50546 -7.65589 -7.47302 -6.58469 -6.34458 -4.02103 1.70434 2.52128 2.92383 3.12147 3.16721 3.22225 3.36639 4.02108 4.08026 4.34065 4.51643 4.60605 4.77223 4.81583 5.09307 5.15362 5.24184 5.48960 5.51843 5.63430 5.68116 5.74861 5.83399 5.85503 5.91798 6.04127 6.18662 6.29690 6.34350 6.94632 6.95475 7.22597 7.38899 7.57454 7.71890 7.87276 8.17824 8.31767 8.51752 8.73911 8.83332 9.09135 9.17724 10.42001 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.003714 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.867096 B = 7536.402623 C = 7577.498021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.252 6.252 3 C -0.063 4.063 4 C 0.167 3.833 5 N -0.752 5.752 6 C 0.098 3.902 7 C -0.168 4.168 8 C -0.120 4.120 9 C 0.072 3.928 10 C -0.466 4.466 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.813 5.813 14 Si 0.903 3.097 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.183 4.183 19 C -0.160 4.160 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.107 4.107 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.388 0.612 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.274 0.726 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -3.551 15.519 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.022 6.022 3 C -0.173 4.173 4 C 0.039 3.961 5 N -0.389 5.389 6 C 0.001 3.999 7 C -0.190 4.190 8 C -0.140 4.140 9 C 0.069 3.931 10 C -0.498 4.498 11 H 0.090 0.910 12 C -0.141 4.141 13 N -0.441 5.441 14 Si 0.729 3.271 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.200 1.200 18 C -0.203 4.203 19 C -0.182 4.182 20 C -0.163 4.163 21 C -0.173 4.173 22 C -0.146 4.146 23 H 0.115 0.885 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.221 0.779 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.190 -4.306 15.575 16.307 hybrid contribution -0.963 1.123 -0.742 1.655 sum 1.227 -3.183 14.833 15.220 Atomic orbital electron populations 1.23329 0.94384 1.05950 1.05149 1.86583 1.07515 1.10543 1.97579 1.24523 1.01457 0.93128 0.98202 1.20797 0.94898 0.96715 0.83701 1.43746 1.47201 1.42746 1.05158 1.17341 1.00157 0.98053 0.84334 1.20073 1.01494 0.99982 0.97431 1.20958 1.01651 1.00748 0.90684 1.17498 0.91650 0.90731 0.93225 1.19401 0.98377 1.33006 0.98993 0.90987 1.25781 0.95197 0.95357 0.97796 1.69849 1.00156 1.36455 1.37672 0.86347 0.79087 0.80146 0.81557 1.18676 1.20300 1.20040 1.20572 1.04802 0.99765 0.95149 1.19803 1.02607 1.02698 0.93078 1.23186 0.98521 0.98752 0.95819 1.22813 0.96352 0.97483 1.00700 1.22771 0.93312 0.97977 1.00542 0.88509 0.90696 0.90207 0.92340 0.93679 0.77857 0.89700 0.86296 0.91501 0.89050 0.89556 0.90867 0.88922 0.90862 0.89510 0.89335 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.43 101.05 1.05 -0.23 16 2 S -0.25 -3.16 21.55 -107.50 -2.32 -5.48 16 3 C -0.06 -0.74 0.72 -89.80 -0.07 -0.81 16 4 C 0.17 2.48 4.14 -4.04 -0.02 2.47 16 5 N -0.75 -13.25 5.28 -58.50 -0.31 -13.56 16 6 C 0.10 2.15 6.67 -83.69 -0.56 1.60 16 7 C -0.17 -3.95 9.22 -39.77 -0.37 -4.31 16 8 C -0.12 -3.18 8.62 -39.26 -0.34 -3.52 16 9 C 0.07 1.96 5.57 -106.80 -0.59 1.37 16 10 C -0.47 -12.81 9.04 -37.87 -0.34 -13.16 16 11 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 12 C 0.07 1.90 5.19 -17.34 -0.09 1.81 16 13 N -0.81 -21.85 10.88 55.54 0.60 -21.24 16 14 Si 0.90 19.45 29.58 -169.99 -5.03 14.43 16 15 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.18 -4.59 9.74 -39.27 -0.38 -4.97 16 19 C -0.16 -3.64 9.82 -39.77 -0.39 -4.03 16 20 C -0.12 -1.18 7.20 -25.91 -0.19 -1.36 16 21 C -0.13 -1.25 7.73 -25.92 -0.20 -1.45 16 22 C -0.11 -1.15 7.08 -25.91 -0.18 -1.34 16 23 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.08 0.96 7.51 -51.93 -0.39 0.57 16 26 H 0.06 0.89 6.89 -51.93 -0.36 0.53 16 27 H 0.05 0.72 7.21 -51.93 -0.37 0.35 16 28 H 0.39 6.49 8.26 -40.82 -0.34 6.15 16 29 H 0.08 1.82 6.67 -52.49 -0.35 1.47 16 30 H 0.12 3.27 6.16 -52.48 -0.32 2.94 16 31 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 32 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.86 7.62 -51.93 -0.40 0.46 16 38 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -28.25 328.98 -10.61 -38.87 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.86 Total: 9.96 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.66 Total: -27.93 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.30 Total: -34.80 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.43 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.32 Total: -5.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.25 -10.61 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284282202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.642 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds