Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81396 * 102.99867 * 2 1 4 4 C 1.52998 * 112.85476 * 294.59797 * 3 2 1 5 5 N 1.46499 * 109.46881 * 292.89652 * 4 3 2 6 6 C 1.38860 * 119.99795 * 183.89886 * 5 4 3 7 7 C 1.39561 * 119.84448 * 0.24980 * 6 5 4 8 8 C 1.36342 * 120.16301 * 180.25225 * 7 6 5 9 9 C 1.40888 * 119.83122 * 359.49790 * 8 7 6 10 10 C 1.41135 * 120.15119 * 180.27036 * 9 8 7 11 11 H 1.07998 * 119.99818 * 153.73565 * 10 9 8 12 12 C 1.39869 * 120.00445 * 333.73507 * 10 9 8 13 13 N 1.30905 * 119.99578 * 345.34132 * 12 10 9 14 14 Si 1.86801 * 120.00163 * 165.33706 * 12 10 9 15 15 H 1.48495 * 109.46925 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46874 * 120.00118 * 14 12 10 17 17 H 1.48499 * 109.46972 * 240.00092 * 14 12 10 18 18 C 1.40881 * 119.69116 * 0.25449 * 9 8 7 19 19 C 1.36337 * 119.83905 * 359.97438 * 18 9 8 20 20 C 1.53791 * 113.68652 * 65.86504 * 3 2 1 21 21 C 1.53781 * 87.07984 * 139.99022 * 20 3 2 22 22 C 1.53783 * 87.08477 * 334.56579 * 21 20 3 23 23 H 1.09007 * 109.46669 * 185.29015 * 1 2 3 24 24 H 1.09003 * 109.46981 * 305.28524 * 1 2 3 25 25 H 1.08992 * 109.47462 * 65.29086 * 1 2 3 26 26 H 1.08997 * 109.47331 * 172.89733 * 4 3 2 27 27 H 1.09005 * 109.46986 * 52.89321 * 4 3 2 28 28 H 0.97004 * 120.00212 * 3.89996 * 5 4 3 29 29 H 1.08002 * 119.92062 * 0.02562 * 7 6 5 30 30 H 1.08004 * 120.08360 * 179.76734 * 8 7 6 31 31 H 0.96999 * 119.99566 * 179.97438 * 13 12 10 32 32 H 1.08001 * 120.07756 * 180.02562 * 18 9 8 33 33 H 1.07992 * 119.92171 * 180.02562 * 19 18 9 34 34 H 1.09002 * 113.61346 * 254.53317 * 20 3 2 35 35 H 1.08997 * 113.61462 * 25.44732 * 20 3 2 36 36 H 1.08994 * 113.61754 * 220.01730 * 21 20 3 37 37 H 1.09005 * 113.68863 * 89.12601 * 21 20 3 38 38 H 1.08991 * 113.61879 * 270.88811 * 22 21 20 39 39 H 1.09000 * 113.61424 * 139.97777 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7838 2.4785 -1.2819 5 7 2.5753 1.9822 -2.4104 6 6 2.4124 2.5405 -3.6714 7 6 1.4977 3.5777 -3.8589 8 6 1.3289 4.1271 -5.0952 9 6 2.0883 3.6523 -6.1828 10 6 1.9231 4.2200 -7.4643 11 1 2.7348 4.1919 -8.1761 12 6 0.7081 4.8191 -7.8126 13 7 -0.3580 4.6095 -7.0824 14 14 0.6068 5.9182 -9.3197 15 1 1.9402 5.9922 -9.9689 16 1 -0.3790 5.3556 -10.2772 17 1 0.1783 7.2801 -8.9111 18 6 3.0135 2.6085 -5.9850 19 6 3.1685 2.0654 -4.7441 20 6 1.7999 2.4990 1.2852 21 6 3.1299 3.2652 1.1922 22 6 3.6763 2.0640 0.4027 23 1 -0.3633 -1.0234 0.0948 24 1 -0.3633 0.5936 0.8389 25 1 -0.3634 0.4295 -0.9335 26 1 1.9392 3.5518 -1.1734 27 1 0.7275 2.2808 -1.4641 28 1 3.2130 1.2636 -2.2768 29 1 0.9194 3.9436 -3.0233 30 1 0.6179 4.9272 -5.2396 31 1 -1.2005 5.0252 -7.3237 32 1 3.5993 2.2401 -6.8142 33 1 3.8777 1.2655 -4.5909 34 1 0.9216 3.1321 1.1589 35 1 1.7315 1.8472 2.1562 36 1 3.6174 3.4124 2.1559 37 1 3.0674 4.1816 0.6052 38 1 4.1208 1.2933 1.0323 39 1 4.3128 2.3458 -0.4361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284282202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = 26.147546 kcal Electronic energy + Delta-G solvation = -18897.164673 eV Core-core repulsion = 16123.433045 eV Total energy + Delta-G solvation = -2773.731628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50551 -39.40427 -36.39756 -34.59274 -31.36435 -31.02080 -29.91567 -28.42277 -26.68985 -25.88584 -24.72373 -22.87218 -21.81119 -19.89241 -19.15112 -18.04093 -17.69694 -16.82032 -16.58894 -16.02690 -15.68865 -15.41592 -14.86423 -14.65183 -14.40330 -14.28460 -14.06016 -13.94830 -13.58624 -13.41695 -13.39106 -13.15768 -12.83192 -12.74850 -12.57208 -12.27817 -11.90398 -11.56623 -11.49551 -11.37043 -11.18135 -11.07780 -10.66402 -10.27403 -9.41201 -8.64573 -8.51591 -8.14977 -6.02146 0.78318 1.09924 1.18283 1.40281 1.54730 1.57408 1.60948 2.28105 2.76660 2.86076 3.48012 3.53568 3.65748 3.82853 3.84992 4.28495 4.31372 4.39297 4.41994 4.50281 4.51701 4.62599 4.77212 4.78887 4.88223 4.99112 5.02952 5.04571 5.11021 5.14949 5.27611 5.40961 5.45946 5.68151 5.79429 5.95952 6.18990 6.39059 6.66909 6.86412 7.09152 7.12604 7.29141 8.50628 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.003714 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.867096 B = 7536.402623 C = 7577.498021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.281 6.281 3 C -0.061 4.061 4 C 0.165 3.835 5 N -0.741 5.741 6 C 0.118 3.882 7 C -0.176 4.176 8 C -0.138 4.138 9 C 0.033 3.967 10 C -0.505 4.505 11 H 0.067 0.933 12 C 0.030 3.970 13 N -0.847 5.847 14 Si 0.978 3.022 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.266 1.266 18 C -0.191 4.191 19 C -0.167 4.167 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.106 4.106 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.395 0.605 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.281 0.719 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -3.750 17.194 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.052 6.052 3 C -0.171 4.171 4 C 0.038 3.962 5 N -0.376 5.376 6 C 0.019 3.981 7 C -0.198 4.198 8 C -0.158 4.158 9 C 0.030 3.970 10 C -0.536 4.536 11 H 0.085 0.915 12 C -0.181 4.181 13 N -0.476 5.476 14 Si 0.799 3.201 15 H -0.185 1.185 16 H -0.194 1.194 17 H -0.191 1.191 18 C -0.211 4.211 19 C -0.190 4.190 20 C -0.152 4.152 21 C -0.167 4.167 22 C -0.145 4.145 23 H 0.128 0.872 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.230 0.770 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.412 -4.531 17.296 18.041 hybrid contribution -0.993 1.062 -1.103 1.825 sum 1.419 -3.468 16.193 16.621 Atomic orbital electron populations 1.23359 0.92734 1.07052 1.05021 1.86698 1.09446 1.11454 1.97579 1.24495 1.02655 0.92348 0.97593 1.20899 0.94025 0.97120 0.84184 1.43782 1.47167 1.42270 1.04394 1.17428 0.98258 0.96588 0.85845 1.20205 1.02181 1.00442 0.96993 1.20884 1.01981 1.01141 0.91836 1.17817 0.93222 0.92199 0.93738 1.19624 0.99185 1.35340 0.99487 0.91495 1.26600 0.94310 0.96182 1.00980 1.69915 1.00745 1.37390 1.39527 0.85229 0.79111 0.78151 0.77570 1.18451 1.19430 1.19101 1.20769 1.04437 0.99467 0.96460 1.20078 1.03184 1.03221 0.92473 1.23190 0.98864 0.98495 0.94691 1.22791 0.96047 0.96505 1.01349 1.22805 0.92291 0.98979 1.00456 0.87246 0.88925 0.91799 0.92259 0.94549 0.76985 0.87946 0.88174 0.90880 0.88535 0.86777 0.90399 0.87518 0.88796 0.90162 0.88332 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 10.43 113.37 1.18 -1.02 16 2 S -0.28 -6.50 21.55 -56.49 -1.22 -7.72 16 3 C -0.06 -1.30 0.72 -10.26 -0.01 -1.31 16 4 C 0.16 4.64 4.14 86.38 0.36 5.00 16 5 N -0.74 -24.95 5.28 -338.99 -1.79 -26.74 16 6 C 0.12 5.09 6.67 38.67 0.26 5.35 16 7 C -0.18 -8.31 9.22 22.15 0.20 -8.10 16 8 C -0.14 -7.54 8.62 22.48 0.19 -7.35 16 9 C 0.03 1.87 5.57 -21.27 -0.12 1.75 16 10 C -0.50 -28.75 9.04 23.38 0.21 -28.54 16 11 H 0.07 3.71 7.89 -2.91 -0.02 3.68 16 12 C 0.03 1.61 5.19 85.23 0.44 2.05 16 13 N -0.85 -46.79 10.88 21.82 0.24 -46.55 16 14 Si 0.98 40.58 29.58 68.60 2.03 42.61 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 C -0.19 -9.74 9.74 22.47 0.22 -9.52 16 19 C -0.17 -7.51 9.82 22.15 0.22 -7.29 16 20 C -0.11 -1.81 7.20 31.12 0.22 -1.59 16 21 C -0.13 -2.01 7.73 31.12 0.24 -1.77 16 22 C -0.11 -2.03 7.08 31.12 0.22 -1.81 16 23 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.45 7.51 -2.39 -0.02 1.43 16 26 H 0.06 1.70 6.89 -2.39 -0.02 1.68 16 27 H 0.04 1.12 7.21 -2.38 -0.02 1.10 16 28 H 0.40 12.45 8.26 -92.71 -0.77 11.68 16 29 H 0.10 4.37 6.67 -2.91 -0.02 4.35 16 30 H 0.10 5.75 6.16 -2.91 -0.02 5.74 16 31 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 32 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 35 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.39 7.62 -2.38 -0.02 1.37 16 38 H 0.10 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.07 1.51 7.87 -2.39 -0.02 1.50 16 Total: -1.00 -62.09 328.98 3.38 -58.71 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.27 Total: 33.84 kcal Atomic # 6 Polarization: -58.00 SS G_CDS: 3.84 Total: -54.16 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.55 Total: -73.29 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.22 Total: -7.72 kcal Total: -62.09 3.38 -58.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284282202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.862 kcal (2) G-P(sol) polarization free energy of solvation -62.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds