Wall clock time and date at job start Mon Mar 30 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99947 * 2 1 4 4 N 1.46495 * 109.46981 * 124.99964 * 3 2 1 5 5 C 1.46496 * 120.00628 * 270.00193 * 4 3 2 6 6 C 1.50699 * 109.47598 * 270.00465 * 5 4 3 7 7 H 1.08005 * 119.99628 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00538 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99668 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47170 * 89.99666 * 10 8 6 12 12 H 1.48495 * 109.46883 * 209.99839 * 10 8 6 13 13 H 1.48496 * 109.47123 * 329.99923 * 10 8 6 14 14 C 1.34774 * 119.99828 * 90.00355 * 4 3 2 15 15 O 1.21279 * 120.00472 * 179.97438 * 14 4 3 16 16 C 1.50706 * 120.00020 * 0.02562 * 14 4 3 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 4 18 18 C 1.38216 * 120.01717 * 99.99685 * 17 16 14 19 19 C 1.38222 * 120.02705 * 179.97438 * 18 17 16 20 20 C 1.38268 * 120.05202 * 0.02562 * 19 18 17 21 21 C 1.38177 * 120.02417 * 0.02562 * 20 19 18 22 22 C 1.38444 * 120.00987 * 279.72150 * 17 16 14 23 23 F 1.35100 * 120.02524 * 359.97438 * 22 17 16 24 24 H 1.08000 * 119.99682 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00342 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.00211 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46927 * 5.00354 * 3 2 1 28 28 H 1.08993 * 109.47158 * 245.00691 * 3 2 1 29 29 H 1.09008 * 109.47096 * 29.99824 * 5 4 3 30 30 H 1.09003 * 109.47776 * 149.99700 * 5 4 3 31 31 H 0.97002 * 119.99991 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46953 * 299.99667 * 16 14 4 33 33 H 1.09000 * 109.47318 * 59.99264 * 16 14 4 34 34 H 1.08002 * 119.98512 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.97441 * 180.02562 * 19 18 17 36 36 H 1.07993 * 119.98818 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.01029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8442 3.3435 2.4806 7 1 3.3038 3.8369 1.6369 8 6 2.5184 4.0666 3.6084 9 7 2.7678 5.3569 3.6571 10 14 1.7240 3.2130 5.0679 11 1 2.7801 2.7229 5.9896 12 1 0.8472 4.1729 5.7854 13 1 0.9134 2.0649 4.5887 14 6 4.2496 0.8662 0.9823 15 8 5.0200 0.8888 1.9188 16 6 4.6972 0.3185 -0.3484 17 6 6.1314 -0.1334 -0.2490 18 6 6.4240 -1.4738 -0.0818 19 6 7.7394 -1.8886 0.0089 20 6 8.7640 -0.9632 -0.0670 21 6 8.4739 0.3775 -0.2331 22 6 7.1566 0.7934 -0.3309 23 9 6.8720 2.1031 -0.5004 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6211 1.4027 -0.9314 29 1 1.4887 1.6966 2.5460 30 1 3.0990 1.3602 3.2260 31 1 2.5390 5.8655 4.4508 32 1 4.0681 -0.5282 -0.6230 33 1 4.6124 1.0955 -1.1082 34 1 5.6245 -2.1974 -0.0219 35 1 7.9671 -2.9363 0.1392 36 1 9.7913 -1.2884 0.0044 37 1 9.2743 1.1001 -0.2919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292462832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:05 Heat of formation + Delta-G solvation = -53.851028 kcal Electronic energy + Delta-G solvation = -21249.171330 eV Core-core repulsion = 17905.757527 eV Total energy + Delta-G solvation = -3343.413802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.90757 -41.02782 -39.61794 -37.26090 -35.14451 -33.90413 -33.75428 -31.44488 -30.60434 -28.38695 -26.88134 -24.54900 -23.69955 -22.62564 -21.14305 -19.93865 -19.11589 -18.52022 -18.01815 -17.47631 -17.44226 -16.54903 -16.50195 -16.27805 -15.90653 -15.44132 -15.08588 -14.80168 -14.49757 -14.24202 -14.13376 -14.11065 -13.57401 -13.27548 -13.14330 -13.00577 -12.85762 -12.51803 -12.45009 -12.20834 -11.97506 -11.90394 -11.76370 -10.86413 -10.79752 -10.31482 -9.86943 -9.57169 -9.46569 -8.36481 -6.41865 0.21745 0.30108 1.28598 1.33567 1.34813 1.42787 1.75537 2.28362 2.36113 2.74793 2.97714 3.39568 3.55558 3.76613 3.81371 4.08289 4.10216 4.22857 4.28354 4.40864 4.44880 4.49922 4.58126 4.74545 4.83874 4.90793 4.99894 5.09095 5.14002 5.25644 5.40820 5.43550 5.48237 5.51770 5.72928 5.93433 6.00230 6.21577 6.59417 6.65054 7.18478 7.38485 8.80888 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.005660 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.745262 B = 4945.582925 C = 5845.384278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.181 4.181 3 C 0.129 3.871 4 N -0.596 5.596 5 C 0.229 3.771 6 C -0.537 4.537 7 H 0.024 0.976 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.949 3.051 11 H -0.277 1.277 12 H -0.272 1.272 13 H -0.237 1.237 14 C 0.502 3.498 15 O -0.587 6.587 16 C -0.091 4.091 17 C -0.117 4.117 18 C -0.087 4.087 19 C -0.126 4.126 20 C -0.091 4.091 21 C -0.168 4.168 22 C 0.072 3.928 23 F -0.161 7.161 24 H 0.121 0.879 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.017 0.983 31 H 0.269 0.731 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 -18.991 -11.884 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C 0.007 3.993 4 N -0.326 5.326 5 C 0.107 3.893 6 C -0.576 4.576 7 H 0.043 0.957 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.771 3.229 11 H -0.202 1.202 12 H -0.197 1.197 13 H -0.160 1.160 14 C 0.291 3.709 15 O -0.468 6.468 16 C -0.130 4.130 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.144 4.144 20 C -0.109 4.109 21 C -0.187 4.187 22 C 0.053 3.947 23 F -0.140 7.140 24 H 0.139 0.861 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.124 0.876 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.440 -18.747 -11.307 22.162 hybrid contribution -0.208 1.234 0.833 1.504 sum 3.233 -17.513 -10.474 20.661 Atomic orbital electron populations 1.24082 0.95521 1.02965 0.98079 1.23294 0.96706 0.97942 1.02050 1.20877 0.92659 0.96913 0.88855 1.47972 1.11882 1.59897 1.12871 1.19260 0.95389 0.91961 0.82733 1.21569 1.40537 0.93636 1.01836 0.95719 1.25875 0.95934 0.95370 1.01569 1.70058 1.49411 1.08585 1.30553 0.85704 0.79057 0.79437 0.78700 1.20250 1.19714 1.15996 1.21132 0.81320 0.77586 0.90823 1.90645 1.53662 1.58231 1.44239 1.20678 0.93978 1.04055 0.94305 1.19650 0.93507 0.94729 1.03899 1.21282 0.98838 0.93298 0.97055 1.21618 0.91710 1.01691 0.99393 1.21418 1.01644 0.90902 0.96942 1.21403 0.93992 0.99096 1.04174 1.18142 0.95366 0.77325 1.03873 1.91448 1.94693 1.34785 1.93036 0.86115 0.88586 0.85786 0.90697 0.88118 0.93376 0.96490 0.92234 0.83871 0.87595 0.82598 0.81716 0.81782 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 14.32 67.78 0.97 -2.50 16 2 C -0.18 -4.23 9.74 25.65 0.25 -3.98 16 3 C 0.13 3.96 5.65 85.63 0.48 4.44 16 4 N -0.60 -24.99 2.44 -830.51 -2.03 -27.02 16 5 C 0.23 11.57 4.23 85.63 0.36 11.93 16 6 C -0.54 -32.89 9.94 25.60 0.25 -32.64 16 7 H 0.02 1.70 8.06 -2.91 -0.02 1.67 16 8 C 0.01 0.63 5.47 84.66 0.46 1.10 16 9 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 10 Si 0.95 45.70 27.47 68.60 1.88 47.58 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 14 C 0.50 21.18 7.66 87.66 0.67 21.85 16 15 O -0.59 -30.89 15.53 -3.02 -0.05 -30.94 16 16 C -0.09 -2.67 4.11 29.10 0.12 -2.55 16 17 C -0.12 -3.49 4.43 -19.82 -0.09 -3.58 16 18 C -0.09 -1.94 9.67 22.26 0.22 -1.73 16 19 C -0.13 -2.31 10.04 22.27 0.22 -2.09 16 20 C -0.09 -1.79 10.04 22.26 0.22 -1.57 16 21 C -0.17 -4.48 10.03 22.31 0.22 -4.25 16 22 C 0.07 2.43 7.14 22.38 0.16 2.59 16 23 F -0.16 -6.47 16.66 44.97 0.75 -5.72 16 24 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 25 H 0.10 2.04 7.84 -2.91 -0.02 2.02 16 26 H 0.12 2.44 7.83 -2.91 -0.02 2.41 16 27 H 0.07 2.50 7.72 -2.38 -0.02 2.48 16 28 H 0.10 2.57 6.44 -2.39 -0.02 2.55 16 29 H 0.05 2.24 7.13 -2.38 -0.02 2.23 16 30 H 0.02 0.92 6.85 -2.39 -0.02 0.91 16 31 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 32 H 0.14 2.87 7.64 -2.39 -0.02 2.85 16 33 H 0.11 2.98 7.20 -2.39 -0.02 2.96 16 34 H 0.16 2.52 8.04 -2.91 -0.02 2.50 16 35 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -83.99 324.57 6.40 -77.59 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.01 Total: 12.80 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 4.53 Total: -12.98 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.73 Total: -88.33 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.75 Total: -5.72 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -83.99 6.40 -77.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292462832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.737 kcal (2) G-P(sol) polarization free energy of solvation -83.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds