Wall clock time and date at job start Mon Mar 30 2020 01:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99970 * 2 1 4 4 N 1.46499 * 109.47126 * 125.00049 * 3 2 1 5 5 C 1.46506 * 119.99936 * 89.99796 * 4 3 2 6 6 C 1.50703 * 109.46877 * 90.00092 * 5 4 3 7 7 H 1.08005 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00321 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47198 * 120.00527 * 10 8 6 13 13 H 1.48498 * 109.47360 * 240.00281 * 10 8 6 14 14 C 1.34773 * 120.00036 * 270.27831 * 4 3 2 15 15 O 1.21281 * 120.00220 * 179.72597 * 14 4 3 16 16 C 1.50706 * 120.00080 * 359.72107 * 14 4 3 17 17 C 1.50690 * 109.47185 * 180.02562 * 16 14 4 18 18 C 1.38269 * 119.98886 * 269.72682 * 17 16 14 19 19 C 1.38222 * 120.05386 * 179.72921 * 18 17 16 20 20 C 1.38230 * 120.02407 * 0.54499 * 19 18 17 21 21 C 1.38435 * 119.97242 * 359.72971 * 20 19 18 22 22 F 1.35097 * 120.02442 * 180.02562 * 21 20 19 23 23 C 1.38180 * 119.98777 * 90.00461 * 17 16 14 24 24 H 1.07995 * 119.99952 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00048 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00152 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47398 * 4.99816 * 3 2 1 28 28 H 1.09005 * 109.46700 * 244.99738 * 3 2 1 29 29 H 1.09000 * 109.46803 * 209.99571 * 5 4 3 30 30 H 1.09000 * 109.47214 * 330.00364 * 5 4 3 31 31 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46762 * 300.00389 * 16 14 4 33 33 H 1.08998 * 109.46924 * 59.99727 * 16 14 4 34 34 H 1.08003 * 119.97421 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.99156 * 180.27680 * 19 18 17 36 36 H 1.07997 * 120.00927 * 179.74870 * 20 19 18 37 37 H 1.07998 * 120.01297 * 359.97154 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9480 0.5259 7 1 4.8586 2.9394 0.3797 8 6 6.6018 1.7095 0.3077 9 7 7.0925 0.5024 0.4861 10 14 7.7206 3.1005 -0.2428 11 1 6.9296 4.3509 -0.3704 12 1 8.7972 3.2966 0.7610 13 1 8.3244 2.7600 -1.5560 14 6 2.5919 1.8171 2.3228 15 8 3.3605 1.8347 3.2609 16 6 1.1876 2.3379 2.4895 17 6 0.9949 2.8192 3.9045 18 6 0.5339 1.9479 4.8741 19 6 0.3621 2.3865 6.1736 20 6 0.6403 3.6999 6.5028 21 6 1.0965 4.5746 5.5316 22 9 1.3692 5.8583 5.8523 23 6 1.2736 4.1326 4.2312 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 4.7141 0.4279 1.9200 30 1 4.3666 0.0351 0.2190 31 1 8.0354 0.3345 0.3322 32 1 1.0225 3.1650 1.7991 33 1 0.4764 1.5397 2.2769 34 1 0.3117 0.9228 4.6168 35 1 0.0062 1.7039 6.9311 36 1 0.5021 4.0433 7.5173 37 1 1.6299 4.8140 3.4728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292499245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:07 Heat of formation + Delta-G solvation = -38.216367 kcal Electronic energy + Delta-G solvation = -20909.148123 eV Core-core repulsion = 17566.412291 eV Total energy + Delta-G solvation = -3342.735833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.80037 -39.68575 -38.37580 -35.69724 -33.42107 -32.56725 -32.06074 -30.47442 -28.43186 -26.90122 -25.43986 -23.09964 -22.64489 -21.47512 -19.97514 -18.48798 -17.14902 -16.59848 -16.51707 -16.27066 -16.09629 -15.48186 -15.31268 -14.82885 -14.35714 -14.15877 -13.88151 -13.37756 -13.03802 -12.98343 -12.91491 -12.38669 -12.06134 -11.78857 -11.65110 -11.53253 -11.22231 -11.12036 -10.95755 -10.84904 -10.57381 -10.18154 -9.65682 -9.39149 -9.08774 -8.78152 -8.53810 -8.44983 -7.72291 -6.06081 -4.10761 1.23100 1.29096 2.33828 3.28950 3.35182 3.37899 3.42466 3.57831 4.06605 4.30700 4.44227 4.69371 4.80905 5.05027 5.08835 5.18808 5.24534 5.28675 5.31963 5.38510 5.49803 5.60803 5.62016 5.89963 5.99162 6.09356 6.13028 6.17173 6.33618 6.56681 6.70403 6.80345 6.95512 7.04536 7.42148 7.50586 7.90377 8.21299 8.36599 8.88260 9.05838 9.54639 11.02100 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.005343 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.491716 B = 5238.831418 C = 6561.699355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.133 3.867 4 N -0.595 5.595 5 C 0.246 3.754 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.531 6.531 16 C -0.109 4.109 17 C -0.025 4.025 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.161 4.161 21 C 0.097 3.903 22 F -0.143 7.143 23 C -0.139 4.139 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 2.177 4.065 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.326 5.326 5 C 0.127 3.873 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.295 3.705 15 O -0.407 6.407 16 C -0.149 4.149 17 C -0.025 4.025 18 C -0.135 4.135 19 C -0.109 4.109 20 C -0.180 4.180 21 C 0.078 3.922 22 F -0.122 7.122 23 C -0.158 4.158 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.589 2.135 4.557 17.336 hybrid contribution 0.832 0.861 -0.390 1.259 sum -15.758 2.996 4.167 16.572 Atomic orbital electron populations 1.23771 0.95689 1.01590 1.02804 1.23572 0.96091 0.99975 0.97839 1.20616 0.92349 0.94090 0.92002 1.48215 1.14430 1.61182 1.08772 1.19304 0.75236 0.94555 0.98233 1.21463 0.93428 0.95950 1.45623 0.92408 1.24931 0.97918 0.95775 0.95457 1.69942 1.14054 1.20189 1.49174 0.86454 0.80670 0.82216 0.78156 1.19800 1.20873 1.20945 1.20095 0.88229 0.78919 0.83223 1.90707 1.55299 1.55349 1.39393 1.20854 0.97302 1.02629 0.94103 1.19215 0.95771 0.92439 0.95105 1.21053 1.00073 0.99551 0.92805 1.20917 0.98844 0.94741 0.96405 1.21064 1.03528 0.94206 0.99168 1.17630 1.01543 0.79063 0.93964 1.91480 1.91671 1.35650 1.93402 1.20990 1.02452 0.96996 0.95360 0.88660 0.88685 0.87068 0.91047 0.88895 0.93834 0.94969 0.92764 0.88357 0.88072 0.85535 0.85170 0.85107 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 13.84 29.02 0.40 -1.69 16 2 C -0.16 -2.05 9.73 -36.02 -0.35 -2.40 16 3 C 0.13 2.04 5.65 -5.19 -0.03 2.01 16 4 N -0.59 -12.11 2.44 -176.43 -0.43 -12.54 16 5 C 0.25 6.30 5.17 -5.19 -0.03 6.27 16 6 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 10 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.51 10.27 7.66 -10.98 -0.08 10.18 16 15 O -0.53 -13.27 15.61 5.56 0.09 -13.18 16 16 C -0.11 -1.55 4.38 -29.04 -0.13 -1.68 16 17 C -0.02 -0.36 4.37 -104.64 -0.46 -0.82 16 18 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 19 C -0.09 -1.07 10.04 -39.59 -0.40 -1.46 16 20 C -0.16 -2.00 10.03 -39.51 -0.40 -2.40 16 21 C 0.10 1.41 7.30 -39.42 -0.29 1.12 16 22 F -0.14 -2.12 17.27 2.25 0.04 -2.08 16 23 C -0.14 -2.09 9.68 -39.51 -0.38 -2.47 16 24 H 0.10 0.85 7.84 -52.49 -0.41 0.44 16 25 H 0.09 0.88 8.06 -52.49 -0.42 0.45 16 26 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.07 0.89 6.10 -51.93 -0.32 0.57 16 28 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 29 H 0.04 1.27 7.41 -51.93 -0.38 0.89 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.10 1.20 7.35 -51.93 -0.38 0.82 16 33 H 0.10 1.19 7.44 -51.93 -0.39 0.80 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -33.17 328.61 -7.38 -40.55 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.80 Total: -0.10 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.94 Total: -8.68 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.31 Total: -38.29 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.17 -7.38 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292499245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.335 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds