Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46973 * 32.89818 * 3 2 1 5 5 C 1.36936 * 120.00257 * 95.93880 * 4 3 2 6 6 H 1.07991 * 120.00368 * 162.32843 * 5 4 3 7 7 C 1.38812 * 119.99723 * 342.05969 * 5 4 3 8 8 N 1.31627 * 119.99914 * 337.14921 * 7 5 4 9 9 Si 1.86793 * 120.00043 * 157.15493 * 7 5 4 10 10 H 1.48501 * 109.47314 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47619 * 119.99731 * 9 7 5 12 12 H 1.48505 * 109.47056 * 239.99664 * 9 7 5 13 13 C 1.46500 * 119.99537 * 275.93730 * 4 3 2 14 14 C 1.53002 * 109.47111 * 270.00162 * 13 4 3 15 15 H 1.09008 * 109.46940 * 304.99861 * 14 13 4 16 16 O 1.42898 * 109.47253 * 65.00373 * 14 13 4 17 17 C 1.52996 * 109.47172 * 185.00770 * 14 13 4 18 18 C 1.50702 * 109.47195 * 174.99997 * 17 14 13 19 19 C 1.38249 * 119.97318 * 269.72114 * 18 17 14 20 20 C 1.38191 * 120.02421 * 179.72567 * 19 18 17 21 21 C 1.38459 * 119.97511 * 0.57194 * 20 19 18 22 22 F 1.35101 * 120.02604 * 179.68095 * 21 20 19 23 23 C 1.38468 * 119.94746 * 359.70509 * 21 20 19 24 24 C 1.38191 * 119.97325 * 359.97438 * 23 21 20 25 25 H 4.40635 * 5.51317 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46922 * 272.89760 * 3 2 1 27 27 H 1.08993 * 109.46856 * 152.89411 * 3 2 1 28 28 H 0.96997 * 119.99630 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47866 * 30.00510 * 13 4 3 30 30 H 1.08999 * 109.46661 * 150.00471 * 13 4 3 31 31 H 0.96695 * 113.99734 * 59.99619 * 16 14 13 32 32 H 1.09007 * 109.47177 * 294.99641 * 17 14 13 33 33 H 1.09000 * 109.47333 * 54.99521 * 17 14 13 34 34 H 1.08004 * 119.98430 * 359.97438 * 19 18 17 35 35 H 1.07997 * 120.01688 * 180.25286 * 20 19 18 36 36 H 1.08002 * 120.00982 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.98521 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1589 -0.7502 5 6 3.4788 -1.0258 -2.0690 6 1 4.0947 -1.7745 -2.5447 7 6 3.0310 0.0687 -2.7959 8 7 1.9563 0.7219 -2.4072 9 14 3.9533 0.6145 -4.3258 10 1 5.1188 -0.2790 -4.5464 11 1 3.0476 0.5464 -5.5007 12 1 4.4273 2.0104 -4.1465 13 6 3.2559 -2.4608 -0.0894 14 6 4.6506 -2.5929 0.5257 15 1 5.4043 -2.4242 -0.2435 16 8 4.8061 -1.6253 1.5656 17 6 4.8207 -3.9980 1.1067 18 6 6.2336 -4.1690 1.6023 19 6 7.2088 -4.6586 0.7534 20 6 8.5059 -4.8105 1.2051 21 6 8.8262 -4.4833 2.5117 22 9 10.0927 -4.6374 2.9563 23 6 7.8474 -3.9984 3.3627 24 6 6.5524 -3.8411 2.9069 25 1 -1.0497 -0.0002 -0.0003 26 1 3.0094 -0.0511 1.0264 27 1 3.0089 0.9156 -0.4682 28 1 1.6433 1.4864 -2.9154 29 1 2.5036 -2.5414 0.6952 30 1 3.1046 -3.2548 -0.8207 31 1 4.1670 -1.7156 2.2856 32 1 4.1259 -4.1351 1.9354 33 1 4.6147 -4.7383 0.3336 34 1 6.9575 -4.9187 -0.2643 35 1 9.2685 -5.1891 0.5406 36 1 8.0961 -3.7432 4.3823 37 1 5.7887 -3.4633 3.5705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294033727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = 4.884913 kcal Electronic energy + Delta-G solvation = -20770.214120 eV Core-core repulsion = 17429.347299 eV Total energy + Delta-G solvation = -3340.866821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.91026 -39.36245 -37.41206 -35.26502 -32.52326 -31.54019 -31.21742 -31.13268 -28.70259 -26.14497 -25.53673 -23.08040 -22.65842 -21.07852 -20.73814 -17.69059 -17.46466 -16.66241 -16.42227 -15.87042 -15.62169 -15.21568 -14.98603 -14.76375 -14.17792 -13.96392 -13.61381 -13.54529 -13.39975 -13.07547 -12.66787 -12.08323 -11.74216 -11.63069 -11.45240 -11.16891 -10.96988 -10.90058 -10.69323 -10.46851 -10.24230 -9.97752 -9.88971 -9.12411 -8.93039 -8.73967 -8.48739 -8.36275 -6.92496 -5.78696 -3.19040 1.13870 1.22100 3.37006 3.46006 3.47308 3.56814 4.15980 4.24317 4.38920 4.53389 4.66093 4.72401 4.84515 4.95347 5.21925 5.24972 5.31443 5.39188 5.52562 5.75466 5.82041 5.86004 5.89739 5.96541 6.02445 6.08945 6.16372 6.24120 6.50206 6.56112 6.74791 6.81593 6.88830 7.28265 7.44331 7.74704 8.14970 8.29227 9.10650 9.20109 9.78268 10.24466 11.24632 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.004215 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.878588 B = 6640.870863 C = 7494.974694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.096 4.096 3 C 0.271 3.729 4 N -0.579 5.579 5 C -0.266 4.266 6 H 0.073 0.927 7 C 0.005 3.995 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.289 1.289 13 C 0.121 3.879 14 C 0.092 3.908 15 H 0.098 0.902 16 O -0.550 6.550 17 C -0.116 4.116 18 C -0.073 4.073 19 C -0.091 4.091 20 C -0.152 4.152 21 C 0.083 3.917 22 F -0.146 7.146 23 C -0.153 4.153 24 C -0.078 4.078 25 H 0.189 0.811 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.253 0.747 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.360 0.640 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 -10.212 10.429 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.099 4.099 3 C 0.145 3.855 4 N -0.298 5.298 5 C -0.395 4.395 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.220 1.220 12 H -0.215 1.215 13 C -0.007 4.007 14 C 0.030 3.970 15 H 0.116 0.884 16 O -0.354 6.354 17 C -0.154 4.154 18 C -0.073 4.073 19 C -0.109 4.109 20 C -0.171 4.171 21 C 0.063 3.937 22 F -0.125 7.125 23 C -0.172 4.172 24 C -0.096 4.096 25 H 0.206 0.794 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.205 0.795 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.998 -9.871 9.939 16.130 hybrid contribution -0.119 0.128 -0.669 0.691 sum 7.878 -9.742 9.270 15.586 Atomic orbital electron populations 1.24186 0.95352 1.04945 1.07980 1.24494 0.95481 0.96155 0.93753 1.17765 0.82250 0.92354 0.93115 1.43862 1.74636 1.02983 1.08285 1.19184 1.25796 1.08119 0.86420 0.90891 1.24881 0.96245 1.00307 0.98018 1.70160 1.20130 1.21998 1.40572 0.86324 0.79620 0.78641 0.82776 1.20320 1.21951 1.21513 1.21440 0.93262 0.89647 0.96333 1.22849 1.00924 0.84188 0.89069 0.88372 1.86640 1.58714 1.56098 1.33940 1.21440 0.92203 1.00237 1.01557 1.19935 0.96343 0.97403 0.93602 1.20956 0.91707 0.98343 0.99913 1.21090 0.98034 1.03570 0.94427 1.17706 0.79248 1.03043 0.93660 1.91472 1.37498 1.93701 1.89823 1.21102 0.93186 1.02685 1.00210 1.20863 0.95494 0.97718 0.95532 0.79367 0.93799 0.89144 0.93626 0.94150 0.92596 0.79483 0.90786 0.89988 0.85030 0.85076 0.85120 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.94 19.25 29.55 0.57 -6.37 16 2 C -0.10 -2.32 11.55 -37.12 -0.43 -2.74 16 3 C 0.27 6.33 5.27 -6.82 -0.04 6.30 16 4 N -0.58 -13.59 2.45 -176.57 -0.43 -14.02 16 5 C -0.27 -6.99 9.64 -15.06 -0.15 -7.14 16 6 H 0.07 1.87 7.93 -52.49 -0.42 1.46 16 7 C 0.00 0.13 4.82 -17.43 -0.08 0.05 16 8 N -0.89 -25.13 9.59 55.49 0.53 -24.59 16 9 Si 0.90 21.43 29.61 -169.99 -5.03 16.39 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.12 2.22 5.33 -4.04 -0.02 2.20 16 14 C 0.09 1.41 3.20 -26.73 -0.09 1.33 16 15 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 16 O -0.55 -8.60 11.57 -35.23 -0.41 -9.01 16 17 C -0.12 -1.35 5.03 -27.88 -0.14 -1.49 16 18 C -0.07 -0.86 4.97 -104.61 -0.52 -1.38 16 19 C -0.09 -1.06 9.70 -39.59 -0.38 -1.44 16 20 C -0.15 -1.76 10.03 -39.52 -0.40 -2.16 16 21 C 0.08 1.01 7.30 -39.42 -0.29 0.73 16 22 F -0.15 -1.86 17.27 2.25 0.04 -1.82 16 23 C -0.15 -1.74 10.03 -39.51 -0.40 -2.13 16 24 C -0.08 -0.88 9.40 -39.60 -0.37 -1.25 16 25 H 0.19 3.59 7.80 -54.11 -0.42 3.17 16 26 H 0.04 0.90 7.03 -51.93 -0.37 0.54 16 27 H 0.09 2.37 6.51 -51.93 -0.34 2.04 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.36 4.34 9.04 45.56 0.41 4.75 16 32 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -30.76 326.60 -7.16 -37.93 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.05 Total: 5.71 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.73 Total: -15.51 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.10 Total: -38.62 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.41 Total: -9.01 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.76 -7.16 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294033727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.813 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds