Wall clock time and date at job start Mon Mar 30 2020 01:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46798 * 111.03578 * 3 2 1 5 5 C 1.36941 * 120.00120 * 88.95414 * 4 3 2 6 6 H 1.07996 * 120.00530 * 159.69028 * 5 4 3 7 7 C 1.38818 * 119.99809 * 339.69292 * 5 4 3 8 8 N 1.31614 * 119.99967 * 5.10386 * 7 5 4 9 9 Si 1.86800 * 119.99798 * 185.11280 * 7 5 4 10 10 H 1.48492 * 109.47310 * 89.99679 * 9 7 5 11 11 H 1.48505 * 109.46826 * 209.99652 * 9 7 5 12 12 H 1.48502 * 109.46803 * 329.99177 * 9 7 5 13 13 C 1.46499 * 119.99862 * 268.67468 * 4 3 2 14 14 C 1.52998 * 109.46878 * 90.00311 * 13 4 3 15 15 H 1.09004 * 109.47391 * 60.00209 * 14 13 4 16 16 O 1.42898 * 109.47459 * 300.00112 * 14 13 4 17 17 C 1.53004 * 109.46971 * 179.97438 * 14 13 4 18 18 C 1.50706 * 109.46913 * 184.99750 * 17 14 13 19 19 C 1.38238 * 119.97531 * 269.73142 * 18 17 14 20 20 C 1.38202 * 120.02370 * 179.72825 * 19 18 17 21 21 C 1.38456 * 119.97210 * 0.56669 * 20 19 18 22 22 F 1.35104 * 120.02438 * 179.68156 * 21 20 19 23 23 C 1.38453 * 119.95020 * 359.70513 * 21 20 19 24 24 C 1.38201 * 119.97456 * 0.02562 * 23 21 20 25 25 H 4.40636 * 5.51390 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47879 * 351.03739 * 3 2 1 27 27 H 1.09001 * 109.46765 * 231.02966 * 3 2 1 28 28 H 0.97005 * 120.00202 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46929 * 210.00051 * 13 4 3 30 30 H 1.08998 * 109.47278 * 330.00035 * 13 4 3 31 31 H 0.96708 * 113.99453 * 300.00242 * 16 14 13 32 32 H 1.08993 * 109.46968 * 304.99753 * 17 14 13 33 33 H 1.08995 * 109.46655 * 65.00138 * 17 14 13 34 34 H 1.08001 * 119.99021 * 359.97438 * 19 18 17 35 35 H 1.07994 * 120.01194 * 180.25032 * 20 19 18 36 36 H 1.08010 * 120.01377 * 180.02562 * 23 21 20 37 37 H 1.08002 * 119.98786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.4967 -1.2892 5 6 3.3412 1.8378 -1.4729 6 1 3.9897 2.1805 -2.2656 7 6 2.7177 2.7569 -0.6401 8 7 2.0086 2.3391 0.3869 9 14 2.8850 4.5866 -0.9773 10 1 1.7862 5.0272 -1.8738 11 1 2.8092 5.3348 0.3032 12 1 4.1925 4.8522 -1.6292 13 6 3.4062 -0.4427 -2.3799 14 6 2.1413 -0.6288 -3.2202 15 1 1.8363 0.3317 -3.6356 16 8 1.0941 -1.1456 -2.3967 17 6 2.4257 -1.6094 -4.3598 18 6 1.2191 -1.6990 -5.2583 19 6 0.2398 -2.6419 -5.0075 20 6 -0.8698 -2.7213 -5.8275 21 6 -0.9947 -1.8637 -6.9073 22 9 -2.0759 -1.9447 -7.7134 23 6 -0.0105 -0.9235 -7.1608 24 6 1.0956 -0.8423 -6.3361 25 1 -1.0501 0.0001 0.0002 26 1 3.0099 -1.0142 0.1601 27 1 3.0090 0.6472 0.7990 28 1 1.5731 2.9813 0.9691 29 1 4.2050 -0.0484 -3.0082 30 1 3.7112 -1.4032 -1.9646 31 1 1.2969 -2.0007 -1.9930 32 1 3.2822 -1.2588 -4.9355 33 1 2.6444 -2.5937 -3.9459 34 1 0.3399 -3.3142 -4.1682 35 1 -1.6367 -3.4553 -5.6291 36 1 -0.1070 -0.2537 -8.0026 37 1 1.8633 -0.1087 -6.5334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294033731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:59 Heat of formation + Delta-G solvation = 14.296278 kcal Electronic energy + Delta-G solvation = -21187.340870 eV Core-core repulsion = 17846.882156 eV Total energy + Delta-G solvation = -3340.458714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.84471 -39.27047 -37.29807 -35.12398 -32.40751 -31.26609 -31.13196 -31.06763 -28.53721 -26.05294 -25.48934 -23.00833 -22.56427 -21.01009 -20.58164 -17.62284 -17.39298 -16.39093 -16.34726 -15.95939 -15.55496 -15.12539 -14.85737 -14.63670 -14.07120 -13.89139 -13.53633 -13.44443 -13.30997 -12.96293 -12.49818 -11.97184 -11.66726 -11.54255 -11.30270 -11.11509 -10.91563 -10.88949 -10.58088 -10.34349 -10.18989 -10.04610 -9.50598 -9.04907 -8.96063 -8.45194 -8.37348 -8.05457 -6.87644 -5.72086 -3.21123 1.21760 1.29597 3.37427 3.43162 3.45117 3.64646 4.31376 4.37669 4.59479 4.73375 4.79160 4.84372 4.91994 5.10129 5.30254 5.32836 5.42458 5.50080 5.61342 5.83945 5.93454 5.96097 6.00679 6.06014 6.15857 6.17137 6.24147 6.31929 6.52176 6.59706 6.83859 6.88172 6.96710 7.53910 7.69677 7.75922 8.35230 8.41086 9.19021 9.56721 9.80635 10.25447 11.26650 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.004687 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.692368 B = 5972.072521 C = 6318.921238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.067 4.067 3 C 0.272 3.728 4 N -0.584 5.584 5 C -0.261 4.261 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.894 5.894 9 Si 0.904 3.096 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.121 3.879 14 C 0.088 3.912 15 H 0.093 0.907 16 O -0.531 6.531 17 C -0.117 4.117 18 C -0.070 4.070 19 C -0.077 4.077 20 C -0.152 4.152 21 C 0.081 3.919 22 F -0.147 7.147 23 C -0.153 4.153 24 C -0.092 4.092 25 H 0.179 0.821 26 H 0.021 0.979 27 H 0.108 0.892 28 H 0.254 0.746 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.352 0.648 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -10.616 -10.184 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 C -0.070 4.070 3 C 0.148 3.852 4 N -0.304 5.304 5 C -0.390 4.390 6 H 0.091 0.909 7 C -0.191 4.191 8 N -0.538 5.538 9 Si 0.734 3.266 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.206 1.206 13 C -0.007 4.007 14 C 0.026 3.974 15 H 0.111 0.889 16 O -0.333 6.333 17 C -0.155 4.155 18 C -0.071 4.071 19 C -0.095 4.095 20 C -0.171 4.171 21 C 0.062 3.938 22 F -0.126 7.126 23 C -0.172 4.172 24 C -0.110 4.110 25 H 0.197 0.803 26 H 0.039 0.961 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.197 0.803 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.530 -9.907 -10.246 14.262 hybrid contribution -0.494 0.737 -0.371 0.961 sum -1.024 -9.171 -10.617 14.066 Atomic orbital electron populations 1.23838 0.95005 1.09356 1.05137 1.23847 0.94765 0.92815 0.95600 1.17959 0.83333 0.94434 0.89517 1.43963 1.75562 1.03252 1.07589 1.19215 1.22892 0.81497 1.15392 0.90911 1.25043 0.97720 0.98212 0.98161 1.69959 1.35581 1.32083 1.16165 0.86266 0.77627 0.85444 0.77254 1.21554 1.21698 1.20605 1.21592 0.94763 0.93526 0.90829 1.22814 0.91028 0.95258 0.88342 0.88906 1.86860 1.41514 1.38972 1.65949 1.21499 0.94929 1.01563 0.97517 1.19940 0.97016 0.95028 0.95074 1.20856 0.92548 0.98122 0.98009 1.21093 1.00016 1.00572 0.95449 1.17688 0.85344 0.99059 0.91700 1.91467 1.53149 1.95811 1.72129 1.21076 0.94616 0.99447 1.02013 1.20933 0.97389 0.98564 0.94148 0.80348 0.96099 0.87481 0.93474 0.92802 0.94049 0.80323 0.90327 0.91000 0.85249 0.85176 0.85151 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.47 18.45 29.55 0.55 -6.93 16 2 C -0.07 -1.63 9.07 -37.12 -0.34 -1.97 16 3 C 0.27 6.37 5.42 -6.83 -0.04 6.33 16 4 N -0.58 -13.65 2.46 -176.57 -0.43 -14.08 16 5 C -0.26 -6.82 9.72 -15.06 -0.15 -6.96 16 6 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 7 C 0.01 0.19 5.39 -17.43 -0.09 0.09 16 8 N -0.89 -25.15 8.29 55.49 0.46 -24.69 16 9 Si 0.90 21.63 29.56 -169.99 -5.02 16.60 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.12 2.19 5.41 -4.04 -0.02 2.17 16 14 C 0.09 1.49 3.22 -26.73 -0.09 1.40 16 15 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 16 O -0.53 -9.66 9.34 -35.23 -0.33 -9.99 16 17 C -0.12 -1.46 5.03 -27.88 -0.14 -1.60 16 18 C -0.07 -0.92 4.96 -104.62 -0.52 -1.44 16 19 C -0.08 -0.97 9.41 -39.59 -0.37 -1.34 16 20 C -0.15 -1.92 10.03 -39.51 -0.40 -2.32 16 21 C 0.08 1.09 7.30 -39.42 -0.29 0.80 16 22 F -0.15 -2.02 17.27 2.25 0.04 -1.98 16 23 C -0.15 -1.94 10.03 -39.52 -0.40 -2.34 16 24 C -0.09 -1.18 9.70 -39.59 -0.38 -1.56 16 25 H 0.18 3.80 7.80 -54.09 -0.42 3.38 16 26 H 0.02 0.43 7.88 -51.93 -0.41 0.02 16 27 H 0.11 2.80 6.26 -51.93 -0.32 2.47 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 30 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 31 H 0.35 5.32 9.05 45.56 0.41 5.74 16 32 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -30.31 320.92 -7.19 -37.51 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.07 Total: 7.46 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.67 Total: -15.67 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.03 Total: -38.77 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.33 Total: -9.99 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.31 -7.19 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294033731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.805 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds