Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46798 * 111.03578 * 3 2 1 5 5 C 1.36941 * 120.00120 * 88.95414 * 4 3 2 6 6 H 1.07996 * 120.00530 * 159.69028 * 5 4 3 7 7 C 1.38818 * 119.99809 * 339.69292 * 5 4 3 8 8 N 1.31614 * 119.99967 * 5.10386 * 7 5 4 9 9 Si 1.86800 * 119.99798 * 185.11280 * 7 5 4 10 10 H 1.48492 * 109.47310 * 89.99679 * 9 7 5 11 11 H 1.48505 * 109.46826 * 209.99652 * 9 7 5 12 12 H 1.48502 * 109.46803 * 329.99177 * 9 7 5 13 13 C 1.46499 * 119.99862 * 268.67468 * 4 3 2 14 14 C 1.52998 * 109.46878 * 90.00311 * 13 4 3 15 15 H 1.09004 * 109.47391 * 60.00209 * 14 13 4 16 16 O 1.42898 * 109.47459 * 300.00112 * 14 13 4 17 17 C 1.53004 * 109.46971 * 179.97438 * 14 13 4 18 18 C 1.50706 * 109.46913 * 184.99750 * 17 14 13 19 19 C 1.38238 * 119.97531 * 269.73142 * 18 17 14 20 20 C 1.38202 * 120.02370 * 179.72825 * 19 18 17 21 21 C 1.38456 * 119.97210 * 0.56669 * 20 19 18 22 22 F 1.35104 * 120.02438 * 179.68156 * 21 20 19 23 23 C 1.38453 * 119.95020 * 359.70513 * 21 20 19 24 24 C 1.38201 * 119.97456 * 0.02562 * 23 21 20 25 25 H 4.40636 * 5.51390 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47879 * 351.03739 * 3 2 1 27 27 H 1.09001 * 109.46765 * 231.02966 * 3 2 1 28 28 H 0.97005 * 120.00202 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46929 * 210.00051 * 13 4 3 30 30 H 1.08998 * 109.47278 * 330.00035 * 13 4 3 31 31 H 0.96708 * 113.99453 * 300.00242 * 16 14 13 32 32 H 1.08993 * 109.46968 * 304.99753 * 17 14 13 33 33 H 1.08995 * 109.46655 * 65.00138 * 17 14 13 34 34 H 1.08001 * 119.99021 * 359.97438 * 19 18 17 35 35 H 1.07994 * 120.01194 * 180.25032 * 20 19 18 36 36 H 1.08010 * 120.01377 * 180.02562 * 23 21 20 37 37 H 1.08002 * 119.98786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.4967 -1.2892 5 6 3.3412 1.8378 -1.4729 6 1 3.9897 2.1805 -2.2656 7 6 2.7177 2.7569 -0.6401 8 7 2.0086 2.3391 0.3869 9 14 2.8850 4.5866 -0.9773 10 1 1.7862 5.0272 -1.8738 11 1 2.8092 5.3348 0.3032 12 1 4.1925 4.8522 -1.6292 13 6 3.4062 -0.4427 -2.3799 14 6 2.1413 -0.6288 -3.2202 15 1 1.8363 0.3317 -3.6356 16 8 1.0941 -1.1456 -2.3967 17 6 2.4257 -1.6094 -4.3598 18 6 1.2191 -1.6990 -5.2583 19 6 0.2398 -2.6419 -5.0075 20 6 -0.8698 -2.7213 -5.8275 21 6 -0.9947 -1.8637 -6.9073 22 9 -2.0759 -1.9447 -7.7134 23 6 -0.0105 -0.9235 -7.1608 24 6 1.0956 -0.8423 -6.3361 25 1 -1.0501 0.0001 0.0002 26 1 3.0099 -1.0142 0.1601 27 1 3.0090 0.6472 0.7990 28 1 1.5731 2.9813 0.9691 29 1 4.2050 -0.0484 -3.0082 30 1 3.7112 -1.4032 -1.9646 31 1 1.2969 -2.0007 -1.9930 32 1 3.2822 -1.2588 -4.9355 33 1 2.6444 -2.5937 -3.9459 34 1 0.3399 -3.3142 -4.1682 35 1 -1.6367 -3.4553 -5.6291 36 1 -0.1070 -0.2537 -8.0026 37 1 1.8633 -0.1087 -6.5334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294033731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -2.552204 kcal Electronic energy + Delta-G solvation = -21188.071475 eV Core-core repulsion = 17846.882156 eV Total energy + Delta-G solvation = -3341.189319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.87838 -40.29604 -38.72128 -36.77721 -33.61411 -33.17690 -32.78123 -32.02330 -29.91622 -27.86278 -26.94374 -24.10125 -23.92720 -22.33292 -21.88266 -19.26677 -18.61905 -18.12121 -17.45344 -17.37626 -16.60421 -16.54719 -16.30641 -15.93000 -15.48101 -15.26576 -14.92811 -14.79400 -14.42005 -14.23597 -14.12449 -13.25030 -13.10459 -12.97002 -12.84976 -12.55784 -12.50520 -12.20853 -12.18288 -11.86562 -11.80938 -11.62324 -11.07576 -10.74891 -10.29161 -10.00150 -9.94218 -9.43873 -8.70272 -7.73551 -5.20848 0.21696 0.34164 1.45952 1.48886 1.55056 2.48480 2.66245 2.72251 2.93507 3.33560 3.38529 3.72669 3.81359 3.95766 3.99367 4.03432 4.29390 4.35636 4.42449 4.47333 4.52929 4.72661 4.76056 5.00136 5.03068 5.05997 5.13370 5.20055 5.24591 5.33820 5.42553 5.60831 5.69701 5.71183 5.92740 6.00471 6.40436 7.20304 7.21630 7.70978 7.94300 8.32949 9.22702 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.004687 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.692368 B = 5972.072521 C = 6318.921238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.079 4.079 3 C 0.274 3.726 4 N -0.599 5.599 5 C -0.258 4.258 6 H 0.077 0.923 7 C -0.048 4.048 8 N -0.917 5.917 9 Si 0.957 3.043 10 H -0.299 1.299 11 H -0.298 1.298 12 H -0.266 1.266 13 C 0.116 3.884 14 C 0.101 3.899 15 H 0.052 0.948 16 O -0.552 6.552 17 C -0.101 4.101 18 C -0.083 4.083 19 C -0.081 4.081 20 C -0.159 4.159 21 C 0.063 3.937 22 F -0.152 7.152 23 C -0.160 4.160 24 C -0.102 4.102 25 H 0.197 0.803 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.242 0.758 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.367 0.633 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -11.885 -11.162 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 C -0.083 4.083 3 C 0.149 3.851 4 N -0.319 5.319 5 C -0.388 4.388 6 H 0.095 0.905 7 C -0.243 4.243 8 N -0.563 5.563 9 Si 0.787 3.213 10 H -0.227 1.227 11 H -0.225 1.225 12 H -0.191 1.191 13 C -0.010 4.010 14 C 0.039 3.961 15 H 0.070 0.930 16 O -0.356 6.356 17 C -0.139 4.139 18 C -0.083 4.083 19 C -0.099 4.099 20 C -0.177 4.177 21 C 0.044 3.956 22 F -0.131 7.131 23 C -0.179 4.179 24 C -0.120 4.120 25 H 0.214 0.786 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.213 0.787 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.255 -11.206 -11.259 15.887 hybrid contribution -0.708 1.061 -0.115 1.281 sum -0.453 -10.145 -11.373 15.247 Atomic orbital electron populations 1.24399 0.95851 1.09277 1.05018 1.24205 0.95373 0.92914 0.95760 1.17849 0.82967 0.95363 0.88923 1.44122 1.75571 1.03128 1.09121 1.19532 1.21830 0.83119 1.14320 0.90518 1.25643 0.98631 1.01311 0.98680 1.70165 1.37049 1.32130 1.16993 0.85419 0.77637 0.81893 0.76395 1.22732 1.22464 1.19089 1.21816 0.95500 0.93732 0.89910 1.22431 0.89557 0.94812 0.89298 0.93026 1.86817 1.42166 1.40120 1.66546 1.21319 0.95186 1.01532 0.95868 1.20106 0.97435 0.95376 0.95365 1.21117 0.92194 0.98257 0.98350 1.21350 1.00572 1.00703 0.95102 1.17960 0.85552 0.99845 0.92238 1.91449 1.53435 1.95903 1.72344 1.21302 0.94465 0.99549 1.02543 1.21183 0.97756 0.98815 0.94231 0.78628 0.92741 0.90694 0.94775 0.91954 0.91057 0.78681 0.88802 0.88424 0.83455 0.83574 0.83741 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -15.33 18.45 74.32 1.37 -13.96 16 2 C -0.08 -3.82 9.07 31.12 0.28 -3.54 16 3 C 0.27 12.58 5.42 84.57 0.46 13.04 16 4 N -0.60 -27.25 2.46 -712.55 -1.75 -29.00 16 5 C -0.26 -13.32 9.72 84.03 0.82 -12.51 16 6 H 0.08 3.81 7.82 -2.91 -0.02 3.79 16 7 C -0.05 -2.58 5.39 84.86 0.46 -2.13 16 8 N -0.92 -52.38 8.29 21.65 0.18 -52.20 16 9 Si 0.96 44.84 29.56 68.60 2.03 46.87 16 10 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.12 3.92 5.41 86.38 0.47 4.38 16 14 C 0.10 3.20 3.22 30.60 0.10 3.30 16 15 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 16 O -0.55 -19.00 9.34 -148.98 -1.39 -20.39 16 17 C -0.10 -2.20 5.03 29.85 0.15 -2.05 16 18 C -0.08 -1.97 4.96 -19.86 -0.10 -2.07 16 19 C -0.08 -1.85 9.41 22.26 0.21 -1.64 16 20 C -0.16 -3.73 10.03 22.31 0.22 -3.51 16 21 C 0.06 1.63 7.30 22.37 0.16 1.79 16 22 F -0.15 -4.08 17.27 44.97 0.78 -3.30 16 23 C -0.16 -3.87 10.03 22.31 0.22 -3.64 16 24 C -0.10 -2.44 9.70 22.26 0.22 -2.22 16 25 H 0.20 8.16 7.80 -4.41 -0.03 8.12 16 26 H 0.05 2.10 7.88 -2.39 -0.02 2.08 16 27 H 0.08 3.95 6.26 -2.39 -0.01 3.94 16 28 H 0.24 13.92 8.31 -92.70 -0.77 13.15 16 29 H 0.06 1.99 8.03 -2.38 -0.02 1.97 16 30 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 31 H 0.37 10.03 9.05 -74.05 -0.67 9.36 16 32 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.10 1.66 8.08 -2.39 -0.02 1.65 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -65.02 320.92 5.28 -59.75 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.40 Total: 23.03 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 5.04 Total: -24.75 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.57 Total: -81.20 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.39 Total: -20.39 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.02 5.28 -59.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294033731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.194 kcal (2) G-P(sol) polarization free energy of solvation -65.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds