Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46916 * 2 1 4 4 C 1.50693 * 109.47291 * 240.00319 * 2 1 3 5 5 H 1.08003 * 120.00117 * 275.00161 * 4 2 1 6 6 C 1.37873 * 120.00463 * 94.99975 * 4 2 1 7 7 N 1.31516 * 120.00610 * 184.91773 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 4.91690 * 6 4 2 9 9 H 1.48492 * 109.47280 * 84.83132 * 8 6 4 10 10 H 1.48503 * 109.47057 * 204.83729 * 8 6 4 11 11 H 1.48505 * 109.46630 * 324.83371 * 8 6 4 12 12 N 1.46496 * 109.47457 * 120.00072 * 2 1 3 13 13 C 1.34780 * 120.00005 * 275.00566 * 12 2 1 14 14 O 1.21281 * 120.00219 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00147 * 179.97438 * 13 12 2 16 16 H 1.09004 * 115.55036 * 325.58074 * 15 13 12 17 17 C 1.53003 * 117.49724 * 111.24693 * 15 13 12 18 18 C 1.52998 * 117.49831 * 179.90853 * 15 13 12 19 19 H 1.08998 * 117.50234 * 359.97438 * 18 15 13 20 20 C 1.50707 * 117.49915 * 144.99793 * 18 15 13 21 21 C 1.38249 * 119.97170 * 59.72575 * 20 18 15 22 22 C 1.38199 * 120.01965 * 179.73184 * 21 20 18 23 23 C 1.38456 * 119.97645 * 0.56262 * 22 21 20 24 24 F 1.35098 * 120.02410 * 179.68369 * 23 22 21 25 25 C 1.38458 * 119.95005 * 359.71082 * 23 22 21 26 26 C 1.38198 * 119.97266 * 359.97438 * 25 23 22 27 27 H 1.08994 * 109.47107 * 55.03714 * 1 2 3 28 28 H 1.09007 * 109.46841 * 175.03583 * 1 2 3 29 29 H 1.09001 * 109.46771 * 295.03055 * 1 2 3 30 30 H 0.96998 * 120.00468 * 180.02562 * 7 6 4 31 31 H 0.96997 * 120.00357 * 94.99821 * 12 2 1 32 32 H 1.09005 * 117.49985 * 214.99962 * 17 15 13 33 33 H 1.08992 * 117.50015 * 0.02820 * 17 15 13 34 34 H 1.07996 * 119.98652 * 359.97438 * 21 20 18 35 35 H 1.08007 * 120.00760 * 180.25449 * 22 21 20 36 36 H 1.07997 * 120.01475 * 180.02562 * 25 23 22 37 37 H 1.07999 * 119.99037 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1355 -1.7854 -1.2291 6 6 2.3603 0.0122 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3136 1.8792 -2.3174 9 1 3.5991 2.3950 -1.7821 10 1 2.1057 2.3992 -3.6928 11 1 1.1986 2.3275 -1.4449 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1586 2.4116 15 6 2.6489 -0.7288 3.5877 16 1 2.3499 -1.7727 3.6827 17 6 4.0320 -0.3395 4.1135 18 6 2.7748 0.0898 4.8741 19 1 2.4951 1.1424 4.8303 20 6 2.4759 -0.6088 6.1756 21 6 3.2138 -1.7162 6.5504 22 6 2.9443 -2.3542 7.7462 23 6 1.9271 -1.8911 8.5635 24 9 1.6585 -2.5180 9.7297 25 6 1.1850 -0.7854 8.1844 26 6 1.4607 -0.1450 6.9912 27 1 -0.3633 0.5889 -0.8421 28 1 -0.3633 -1.0239 -0.0889 29 1 -0.3633 0.4348 0.9312 30 1 2.9371 -0.1047 -4.2554 31 1 2.2491 -1.6317 1.1526 32 1 4.6429 -1.1273 4.5545 33 1 4.5787 0.4308 3.5697 34 1 4.0038 -2.0803 5.9103 35 1 3.5236 -3.2169 8.0408 36 1 0.3917 -0.4230 8.8213 37 1 0.8823 0.7178 6.6954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299697767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -42.595006 kcal Electronic energy + Delta-G solvation = -20299.078424 eV Core-core repulsion = 16956.152719 eV Total energy + Delta-G solvation = -3342.925705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.10510 -40.10793 -38.86079 -36.34069 -34.75028 -32.36962 -31.40905 -30.52797 -29.66022 -25.37066 -24.37620 -23.96629 -22.96174 -20.95295 -20.26956 -19.53134 -18.03256 -17.63026 -16.63793 -16.24557 -15.84298 -15.77250 -15.27318 -14.88390 -14.45137 -14.03709 -13.80912 -13.57890 -13.25730 -12.93174 -12.77383 -12.54556 -12.46609 -12.11907 -11.70246 -11.51818 -11.22333 -11.13381 -10.85563 -10.68054 -10.58803 -10.45065 -9.90185 -9.37166 -9.24866 -9.21536 -8.73724 -8.60507 -8.11745 -6.26014 -4.29905 0.85029 0.97990 2.94603 3.23401 3.31067 3.32163 3.39037 3.84876 4.01352 4.04853 4.30036 4.46825 4.52817 4.62395 4.78125 4.89262 4.99364 5.06389 5.16807 5.25623 5.44249 5.58284 5.70934 5.77212 5.87794 5.93094 5.97439 6.08729 6.32071 6.36993 6.50446 6.63653 6.65800 6.91182 7.17089 7.35177 7.52909 8.11424 8.55163 8.74508 8.95496 9.35966 10.85727 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039245 B = 0.003215 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.302431 B = 8706.986697 C = 8786.129588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.529 3.471 14 O -0.560 6.560 15 C -0.170 4.170 16 H 0.122 0.878 17 C -0.145 4.145 18 C -0.092 4.092 19 H 0.129 0.871 20 C -0.055 4.055 21 C -0.092 4.092 22 C -0.150 4.150 23 C 0.088 3.912 24 F -0.143 7.143 25 C -0.151 4.151 26 C -0.081 4.081 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -2.356 21.057 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.345 5.345 13 C 0.313 3.687 14 O -0.440 6.440 15 C -0.191 4.191 16 H 0.140 0.860 17 C -0.183 4.183 18 C -0.111 4.111 19 H 0.146 0.854 20 C -0.055 4.055 21 C -0.110 4.110 22 C -0.169 4.169 23 C 0.069 3.931 24 F -0.122 7.122 25 C -0.169 4.169 26 C -0.099 4.099 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.614 -1.526 20.878 20.942 hybrid contribution 0.030 0.238 0.018 0.241 sum 0.644 -1.288 20.895 20.945 Atomic orbital electron populations 1.22220 0.98579 1.00602 0.99254 1.19137 0.90930 0.94322 0.82766 0.93240 1.21012 1.45270 0.95654 0.94952 0.90308 1.24944 0.93602 0.98656 0.95143 1.69880 1.44701 1.36225 1.01703 0.86890 0.79789 0.85824 0.77380 1.19850 1.21154 1.18485 1.46573 1.64382 1.13969 1.09588 1.19553 0.78217 0.86916 0.83968 1.90636 1.51990 1.16150 1.85225 1.22468 1.02422 1.00559 0.93658 0.86034 1.23120 0.89574 1.03642 1.01933 1.21061 1.02368 0.99941 0.87724 0.85356 1.19270 0.95801 0.95430 0.94993 1.20982 0.99497 0.94853 0.95688 1.21116 0.98445 1.01993 0.95343 1.17739 0.97889 0.94112 0.83377 1.91490 1.93315 1.81530 1.45846 1.21140 1.01266 0.96025 0.98513 1.20911 0.96450 0.99748 0.92803 0.92898 0.93395 0.95222 0.92206 0.77231 0.87669 0.87566 0.84659 0.84734 0.84706 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.47 37.16 0.35 -2.88 16 2 C 0.23 5.44 2.22 -69.09 -0.15 5.29 16 3 H 0.05 1.27 4.73 -51.93 -0.25 1.03 16 4 C -0.53 -14.13 9.05 -34.45 -0.31 -14.44 16 5 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 8 Si 0.87 21.40 26.99 -169.99 -4.59 16.82 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -6.29 6.82 56.52 0.39 -5.91 16 12 N -0.70 -13.78 5.07 -54.94 -0.28 -14.06 16 13 C 0.53 9.84 7.58 -10.98 -0.08 9.76 16 14 O -0.56 -12.43 15.92 5.56 0.09 -12.34 16 15 C -0.17 -2.27 5.82 -91.77 -0.53 -2.80 16 16 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 17 C -0.15 -1.63 9.56 -26.69 -0.26 -1.89 16 18 C -0.09 -1.11 5.56 -91.73 -0.51 -1.62 16 19 H 0.13 1.71 7.67 -51.93 -0.40 1.31 16 20 C -0.05 -0.57 5.61 -104.61 -0.59 -1.16 16 21 C -0.09 -0.85 9.29 -39.59 -0.37 -1.22 16 22 C -0.15 -1.37 10.03 -39.52 -0.40 -1.77 16 23 C 0.09 0.89 7.30 -39.42 -0.29 0.60 16 24 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 25 C -0.15 -1.43 10.03 -39.52 -0.40 -1.82 16 26 C -0.08 -0.81 9.73 -39.59 -0.39 -1.19 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 6.84 8.59 -40.82 -0.35 6.49 16 32 H 0.11 0.89 6.19 -51.93 -0.32 0.57 16 33 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.14 1.00 6.03 -52.49 -0.32 0.69 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -31.18 321.40 -7.72 -38.91 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.59 Total: 5.52 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -4.01 Total: -12.98 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.50 Total: -39.26 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.18 -7.72 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299697767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.688 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds